TCONS_00044130 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044130
Unique NameTCONS_00044130
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length975

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044130 ID=TCONS_00044130|Name=TCONS_00044130|organism=Clytia hemisphaerica|type=transcript|length=975bp
GCAGCCATCTTCCAATTGGGTGTTGAACTGGTGTTTAAGATCAATGGTAT
CCCATTCAAGACATTCCCCAATTTCGAATTGAAAGTTGAAGCAAATGCAG
CTGTCAAAGGAACTCTTAATAACCAATGTATTTCAGGTGGTGTTTCAGCA
AAGACCGCATTGAACTTCTTGGTGGTACCCGACATCCAATCCTTGACCAG
TGTTGCAGACAACTTTGAGAATGGCTGCAACCAATTGGTGGACGGTGTTT
GTACTTCAAATCCTGCTTTCAATGTTGCCAAATGTATCTCCTCCAAAGCT
GATGTTTGTCAATATGCAAGGAATGGTTGCTCACAGATGGCTGAACAACT
TGCCAAGATTCCAAACCCGATTCAAAACAATCCATTATTGAAAATGTTCA
CATTGTTACGTGGGCCTTCACTAGATGTGTCTTTGAACAAGAAACTTTGC
ACCAATCCAAATGTTGTTACTAACGGTGGAAAGCCTGGTGTCCGTGGAAT
CAAATACCGCATCGTTTCTGAAGGATGTGACGACAAAGGTCGTACCGGTT
GTGGACATGCTCAAGTCTATTTGAATGATAAACCACAAAATGTTGCCATC
GTGCACAGAGGTTTGAGCTTCGTTGCTATCAATTCTGTGACAGGAGCTGT
TACTGGCAAACGTGCTTTTGATATCCATGGATTGAGACATTGCATTCACC
TTTTCAACTGGATTAAAAATCTTCCGTCAAATACCATCGTATTGGGATCT
GGACAAGACGAATTTACTGCCAACTACGATAACCATTGTGACAAAGCATT
CGCCCTCATTAACGGACGAAGACCAACCCATTTTGAGTTCCGTAGTTCTT
TCGCAATTGCTGGCTTCCGAGGGTTGCCGAAACCTGATTGGGTGAAACAA
GACTCACGCAAGAGATATCAAGGACCAACACGAATGAGCGGTTTCATTCA
ACTTCCCACCATCAGTAGTGGTAAT
Run BLAST on NCBI

protein sequence of TCONS_00044130-protein

>TCONS_00044130-protein ID=TCONS_00044130-protein|Name=TCONS_00044130-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
AAIFQLGVELVFKINGIPFKTFPNFELKVEANAAVKGTLNNQCISGGVSA
KTALNFLVVPDIQSLTSVADNFENGCNQLVDGVCTSNPAFNVAKCISSKA
DVCQYARNGCSQMAEQLAKIPNPIQNNPLLKMFTLLRGPSLDVSLNKKLC
TNPNVVTNGGKPGVRGIKYRIVSEGCDDKGRTGCGHAQVYLNDKPQNVAI
VHRGLSFVAINSVTGAVTGKRAFDIHGLRHCIHLFNWIKNLPSNTIVLGS
GQDEFTANYDNHCDKAFALINGRRPTHFEFRSSFAIAGFRGLPKPDWVKQ
DSRKRYQGPTRMSGFIQLPTISSGN
Run BLAST on NCBI

transcript from alignment at sc0005031:65..2252-

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044130 ID=TCONS_00044130|Name=TCONS_00044130|organism=Clytia hemisphaerica|type=transcript|length=2188bp|location=Sequence derived from alignment at sc0005031:65..2252- (Clytia hemisphaerica)
GCAGCCATCTTCCAATTGGGTGTTGAACTGGTGTTTAAGATCAATGGTAT
CCCATTCAAGACATTCCCCAATTTCGAATTGAAAGTTGAAGCAAATGCAG
CTGTCAAAGGAACTCTTAATAACCAATGTATTTCAGGTACTGTGCACTTT
CTAAACATTTCGCCAAATTTTATAATCATTCCCTCTGTTCAATTTGACTT
GAAGTCTTGTGCATCAGTTTGGTTTCCCCACTAACTTAAAGCTTAGTACG
CTTAAGATTTGACCTTCAATTGATTTTTTTACATTCAGTCTTCTTCTCAA
ACGTCTTCCAATTAAAAAGTTCCTTCTAAAAAGTTCCAGTTCACCTAGAT
ATTGTACCTATTAGCATGTTAAATAAACCCCGTTTTGAATTATCTATAAT
CTATAGTATATTGCATCTATAAATTCCCCTTTGAACAGGGGTGTGGGTGG
ACAGGGCATTTTTAGGTTTTGACGATGCTACATCTCTATTTTTGGACTAT
AATGTTTCTTGCATAGGTGGTGTTTCAGCAAAGACCGCATTGAACTTCTT
GGTGGTACCCGACATCCAATCCTTGACCAGTGTTGCAGACAACTTTGAGA
ATGGCTGCAACCAATTGGTGGACGGTGTTTGTACTTCAAATCCTGCTTTC
AATGTTGCCAAATGTATCTCCTCCAAAGCTGATGTTTGTCAATATGCAAG
GAATGGTTGCTCACAGATGGCTGAACAACTTGCCAAGATTCCAAACCCGA
TTCAAAACAATCCATTATTGAAAATGTTCACATTGTTACGTGGGCCTTCA
CTAGATGTGTCTTTGAACAAGAAACTTTGCACCAATCCAAATGTTGTTAC
TAACGGTGGAAAGCCTGGTGTCCGTAAGCAAATATACCTTTAATCTTAAC
TATTCACTAACCCTGAAAAGAATAGTGGCCAGTAACTCTTGGACACCCCC
CCCTCCAAATGGCAACGTTGATGTTAGGTTTTTTTCCAGGTCTTTTAAAA
AAAGCATCGACTCGGTAACATTGATATTCGGATATTTGGAGAAGGGGTGT
TCGTTACATTTTTTCTAGGCATGGATTTCAGTTACATTGAGATGAAAATT
ATAGCCCTAGGTAAATAAGGAAATGTATTATCTGCGGGGCAAATTTAAAA
GAATCAATTTTTTTGAAACTCACATTTTTATGGTCCCTTCTCGACAGGTC
TAGACTATATTAGAAACCAATTGATTATTATGCAATGAAGGAAATATTTA
TCTCTATCGATATCATTTATTTAATTGGCAGGTGGAATCAAATACCGCAT
CGTTTCTGAAGGATGTGACGACAAAGGTCGTACCGGTTGTGGACATGCTC
AAGTCTATTTGAATGATAAACCACAAAATGTTGCCATCGTGCACAGAGGT
TTGAGCTTCGTTGCTATCAATTCTGTGACAGGAGCTGTTACTGGCAAACG
TGCTTTTGATATCCATGGATTGAGACATTGCATTCACCTTTTCAACTGGA
TTAAAAATCTTCCGTCAAAGTAAGCATTTTGCTATGTGTGACATTTCCGA
TGGACTCTGATACGAGATTCTACTATTTGAATCTTTTTGTAATTTGAACA
AATTGTGAGCTCCTTTCGACAAAATCGAAGACAAAATACTTTAATACCAA
TTAGAATCCTTCTGCAGTTCGACTACTATGTATTTTTACTACTTAATTAT
CATATTTTTGTGCCTCTTAGAAAGGGATAAGCTGGAGTTTTTACAAGCTC
TTATTTGATTTGGTTGGTCGTTAAGATGTAATAAAAGAATCTTTATTACT
TTTTCTAAAGAACGCATCATCTCTATCACTTTAAATGACCAATTAGTGAA
GTATCTTGTAAAAACTCCAGCTCATCCCCTTAGAAAGAAATAGCGAGCCT
GGCACATTAAAAAGTATAAAAATACTTTTCGTTTCCACTTTAAGTACCAT
CGTATTGGGATCTGGACAAGACGAATTTACTGCCAACTACGATAACCATT
GTGACAAAGCATTCGCCCTCATTAACGGACGAAGACCAACCCATTTTGAG
TTCCGTAGTTCTTTCGCAATTGCTGGCTTCCGAGGGTTGCCGAAACCTGA
TTGGGTGAAACAAGACTCACGCAAGAGATATCAAGGACCAACACGAATGA
GCGGTTTCATTCAACTTCCCACCATCAGTAGTGGTAAT

Coding sequence (CDS) from alignment at sc0005031:65..2252-

>TCONS_00044130 ID=TCONS_00044130|Name=TCONS_00044130|organism=Clytia hemisphaerica|type=CDS|length=3900bp|location=Sequence derived from alignment at sc0005031:65..2252- (Clytia hemisphaerica)
TACCATCGTATTGGGATCTGGACAAGACGAATTTACTGCCAACTACGATA
ACCATTGTGACAAAGCATTCGCCCTCATTAACGGACGAAGACCAACCCAT
TTTGAGTTCCGTAGTTCTTTCGCAATTGCTGGCTTCCGAGGGTTGCCGAA
ACCTGATTGGGTGAAACAAGACTCACGCAAGAGATATCAAGGACCAACAC
GAATGAGCGGTTTCATTCAACTTCCCACCATCAGTAGTGGTAATGTGGAA
TCAAATACCGCATCGTTTCTGAAGGATGTGACGACAAAGGTCGTACCGGT
TGTGGACATGCTCAAGTCTATTTGAATGATAAACCACAAAATGTTGCCAT
CGTGCACAGAGGTTTGAGCTTCGTTGCTATCAATTCTGTGACAGGAGCTG
TTACTGGCAAACGTGCTTTTGATATCCATGGATTGAGACATTGCATTCAC
CTTTTCAACTGGATTAAAAATCTTCCGTCAAAGTGGTGTTTCAGCAAAGA
CCGCATTGAACTTCTTGGTGGTACCCGACATCCAATCCTTGACCAGTGTT
GCAGACAACTTTGAGAATGGCTGCAACCAATTGGTGGACGGTGTTTGTAC
TTCAAATCCTGCTTTCAATGTTGCCAAATGTATCTCCTCCAAAGCTGATG
TTTGTCAATATGCAAGGAATGGTTGCTCACAGATGGCTGAACAACTTGCC
AAGATTCCAAACCCGATTCAAAACAATCCATTATTGAAAATGTTCACATT
GTTACGTGGGCCTTCACTAGATGTGTCTTTGAACAAGAAACTTTGCACCA
ATCCAAATGTTGTTACTAACGGTGGAAAGCCTGGTGTCCGCAGCCATCTT
CCAATTGGGTGTTGAACTGGTGTTTAAGATCAATGGTATCCCATTCAAGA
CATTCCCCAATTTCGAATTGAAAGTTGAAGCAAATGCAGCTGTCAAAGGA
ACTCTTAATAACCAATGTATTTCAGTACCATCGTATTGGGATCTGGACAA
GACGAATTTACTGCCAACTACGATAACCATTGTGACAAAGCATTCGCCCT
CATTAACGGACGAAGACCAACCCATTTTGAGTTCCGTAGTTCTTTCGCAA
TTGCTGGCTTCCGAGGGTTGCCGAAACCTGATTGGGTGAAACAAGACTCA
CGCAAGAGATATCAAGGACCAACACGAATGAGCGGTTTCATTCAACTTCC
CACCATCAGTAGTGGTAATGTGGAATCAAATACCGCATCGTTTCTGAAGG
ATGTGACGACAAAGGTCGTACCGGTTGTGGACATGCTCAAGTCTATTTGA
ATGATAAACCACAAAATGTTGCCATCGTGCACAGAGGTTTGAGCTTCGTT
GCTATCAATTCTGTGACAGGAGCTGTTACTGGCAAACGTGCTTTTGATAT
CCATGGATTGAGACATTGCATTCACCTTTTCAACTGGATTAAAAATCTTC
CGTCAAAGTGGTGTTTCAGCAAAGACCGCATTGAACTTCTTGGTGGTACC
CGACATCCAATCCTTGACCAGTGTTGCAGACAACTTTGAGAATGGCTGCA
ACCAATTGGTGGACGGTGTTTGTACTTCAAATCCTGCTTTCAATGTTGCC
AAATGTATCTCCTCCAAAGCTGATGTTTGTCAATATGCAAGGAATGGTTG
CTCACAGATGGCTGAACAACTTGCCAAGATTCCAAACCCGATTCAAAACA
ATCCATTATTGAAAATGTTCACATTGTTACGTGGGCCTTCACTAGATGTG
TCTTTGAACAAGAAACTTTGCACCAATCCAAATGTTGTTACTAACGGTGG
AAAGCCTGGTGTCCGCAGCCATCTTCCAATTGGGTGTTGAACTGGTGTTT
AAGATCAATGGTATCCCATTCAAGACATTCCCCAATTTCGAATTGAAAGT
TGAAGCAAATGCAGCTGTCAAAGGAACTCTTAATAACCAATGTATTTCAG
TACCATCGTATTGGGATCTGGACAAGACGAATTTACTGCCAACTACGATA
ACCATTGTGACAAAGCATTCGCCCTCATTAACGGACGAAGACCAACCCAT
TTTGAGTTCCGTAGTTCTTTCGCAATTGCTGGCTTCCGAGGGTTGCCGAA
ACCTGATTGGGTGAAACAAGACTCACGCAAGAGATATCAAGGACCAACAC
GAATGAGCGGTTTCATTCAACTTCCCACCATCAGTAGTGGTAATGTGGAA
TCAAATACCGCATCGTTTCTGAAGGATGTGACGACAAAGGTCGTACCGGT
TGTGGACATGCTCAAGTCTATTTGAATGATAAACCACAAAATGTTGCCAT
CGTGCACAGAGGTTTGAGCTTCGTTGCTATCAATTCTGTGACAGGAGCTG
TTACTGGCAAACGTGCTTTTGATATCCATGGATTGAGACATTGCATTCAC
CTTTTCAACTGGATTAAAAATCTTCCGTCAAAGTGGTGTTTCAGCAAAGA
CCGCATTGAACTTCTTGGTGGTACCCGACATCCAATCCTTGACCAGTGTT
GCAGACAACTTTGAGAATGGCTGCAACCAATTGGTGGACGGTGTTTGTAC
TTCAAATCCTGCTTTCAATGTTGCCAAATGTATCTCCTCCAAAGCTGATG
TTTGTCAATATGCAAGGAATGGTTGCTCACAGATGGCTGAACAACTTGCC
AAGATTCCAAACCCGATTCAAAACAATCCATTATTGAAAATGTTCACATT
GTTACGTGGGCCTTCACTAGATGTGTCTTTGAACAAGAAACTTTGCACCA
ATCCAAATGTTGTTACTAACGGTGGAAAGCCTGGTGTCCGCAGCCATCTT
CCAATTGGGTGTTGAACTGGTGTTTAAGATCAATGGTATCCCATTCAAGA
CATTCCCCAATTTCGAATTGAAAGTTGAAGCAAATGCAGCTGTCAAAGGA
ACTCTTAATAACCAATGTATTTCAGTACCATCGTATTGGGATCTGGACAA
GACGAATTTACTGCCAACTACGATAACCATTGTGACAAAGCATTCGCCCT
CATTAACGGACGAAGACCAACCCATTTTGAGTTCCGTAGTTCTTTCGCAA
TTGCTGGCTTCCGAGGGTTGCCGAAACCTGATTGGGTGAAACAAGACTCA
CGCAAGAGATATCAAGGACCAACACGAATGAGCGGTTTCATTCAACTTCC
CACCATCAGTAGTGGTAATGTGGAATCAAATACCGCATCGTTTCTGAAGG
ATGTGACGACAAAGGTCGTACCGGTTGTGGACATGCTCAAGTCTATTTGA
ATGATAAACCACAAAATGTTGCCATCGTGCACAGAGGTTTGAGCTTCGTT
GCTATCAATTCTGTGACAGGAGCTGTTACTGGCAAACGTGCTTTTGATAT
CCATGGATTGAGACATTGCATTCACCTTTTCAACTGGATTAAAAATCTTC
CGTCAAAGTGGTGTTTCAGCAAAGACCGCATTGAACTTCTTGGTGGTACC
CGACATCCAATCCTTGACCAGTGTTGCAGACAACTTTGAGAATGGCTGCA
ACCAATTGGTGGACGGTGTTTGTACTTCAAATCCTGCTTTCAATGTTGCC
AAATGTATCTCCTCCAAAGCTGATGTTTGTCAATATGCAAGGAATGGTTG
CTCACAGATGGCTGAACAACTTGCCAAGATTCCAAACCCGATTCAAAACA
ATCCATTATTGAAAATGTTCACATTGTTACGTGGGCCTTCACTAGATGTG
TCTTTGAACAAGAAACTTTGCACCAATCCAAATGTTGTTACTAACGGTGG
AAAGCCTGGTGTCCGCAGCCATCTTCCAATTGGGTGTTGAACTGGTGTTT
AAGATCAATGGTATCCCATTCAAGACATTCCCCAATTTCGAATTGAAAGT
TGAAGCAAATGCAGCTGTCAAAGGAACTCTTAATAACCAATGTATTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027777XLOC_027777Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044130-proteinTCONS_00044130-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044130-exon-sc0005031-1575043694:2117..2252TCONS_00044130-exon-sc0005031-1575043694:2117..2252Clytia hemisphaericaexon
TCONS_00044130-exon-sc0005031-1575043694:1380..1736TCONS_00044130-exon-sc0005031-1575043694:1380..1736Clytia hemisphaericaexon
TCONS_00044130-exon-sc0005031-1575043694:734..971TCONS_00044130-exon-sc0005031-1575043694:734..971Clytia hemisphaericaexon
TCONS_00044130-exon-sc0005031-1575043694:65..308TCONS_00044130-exon-sc0005031-1575043694:65..308Clytia hemisphaericaexon
TCONS_00044130-exon-sc0005031-1510915933:2117..2252TCONS_00044130-exon-sc0005031-1510915933:2117..2252Clytia hemisphaericaexon
TCONS_00044130-exon-sc0005031-1510915933:1380..1736TCONS_00044130-exon-sc0005031-1510915933:1380..1736Clytia hemisphaericaexon
TCONS_00044130-exon-sc0005031-1510915933:734..971TCONS_00044130-exon-sc0005031-1510915933:734..971Clytia hemisphaericaexon
TCONS_00044130-exon-sc0005031-1510915933:65..308TCONS_00044130-exon-sc0005031-1510915933:65..308Clytia hemisphaericaexon
TCONS_00044130-exon-sc0005031-1491911889:2117..2252TCONS_00044130-exon-sc0005031-1491911889:2117..2252Clytia hemisphaericaexon
TCONS_00044130-exon-sc0005031-1491911889:1380..1736TCONS_00044130-exon-sc0005031-1491911889:1380..1736Clytia hemisphaericaexon
TCONS_00044130-exon-sc0005031-1491911889:734..971TCONS_00044130-exon-sc0005031-1491911889:734..971Clytia hemisphaericaexon
TCONS_00044130-exon-sc0005031-1491911889:65..308TCONS_00044130-exon-sc0005031-1491911889:65..308Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005031supercontigsc0005031:65..2252 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.509472	0.496815	0.419527	0.0513052	1.6864	1.03648	107.659	117.848	545.2	370.122	723.473	733.886	237.954	216.631	156.956	202.616	56.0475	61.9372	38.6983	31.8396	0.85083	1.31054	0.955882	1.40011	1.09399	1.24264	3.42942	3.86331	1.13095	0.576128
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044130 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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