TCONS_00044129 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044129
Unique NameTCONS_00044129
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length486

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044129 ID=TCONS_00044129|Name=TCONS_00044129|organism=Clytia hemisphaerica|type=transcript|length=486bp
AGGATGAACACAAACATAGTAACTCCCATGTTTGACTAGAATTTGCTGAC
CGTCCTGACCAAGCACAGTTCCAGGACCCTTCCATTCGTTGCTATCATTT
CTCTTGTAGTATACACGATCTCCTGTAAGGTACTTGATTTCTCCTGAAGT
CCTAATGTTGTGGGCTAAAGCGCGACGTATTCTCTCTGAGTGTTCGCTTG
CAATAAAGGCTTCTNGGACCCTTCCATTCGTTGCTATCATTTCTCTTGTA
GTATACACGATCTCCTGTAAGGTACTTGATTTCTCCTGAAGTCCTAATGT
TGTGGGCTAAAGCGCGACGTATTCTCTCTGAGTGTTCGCTTGCAATAAAG
GCTTCTCTTGCTTTGTGAAGTACTTCAAGATTTTCTTTCATCATTTGTGT
CGCTGGTTTCCCTGATAAAGCTGGTGGTTTATCATCTATTAGTGAAGGCA
ACTGTGGATTCGTTCCAATGGATAATTGGTATGGGG
Run BLAST on NCBI

protein sequence of TCONS_00044129-protein

>TCONS_00044129-protein ID=TCONS_00044129-protein|Name=TCONS_00044129-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
PYQLSIGTNPQLPSLIDDKPPALSGKPATQMMKENLEVLHKAREAFIASE
HSERIRRALAHNIRTSGEIKYLTGDRVYYKRNDSNEWKGXRSLYCKRTLR
ENTSRFSPQH
Run BLAST on NCBI

transcript from alignment at sc0005030:7..492

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044129 ID=TCONS_00044129|Name=TCONS_00044129|organism=Clytia hemisphaerica|type=transcript|length=486bp|location=Sequence derived from alignment at sc0005030:7..492 (Clytia hemisphaerica)
CCCCATACCAATTATCCATTGGAACGAATCCACAGTTGCCTTCACTAATA
GATGATAAACCACCAGCTTTATCAGGGAAACCAGCGACACAAATGATGAA
AGAAAATCTTGAAGTACTTCACAAAGCAAGAGAAGCCTTTATTGCAAGCG
AACACTCAGAGAGAATACGTCGCGCTTTAGCCCACAACATTAGGACTTCA
GGAGAAATCAAGTACCTTACAGGAGATCGTGTATACTACAAGAGAAATGA
TAGCAACGAATGGAAGGGTCCNAGAAGCCTTTATTGCAAGCGAACACTCA
GAGAGAATACGTCGCGCTTTAGCCCACAACATTAGGACTTCAGGAGAAAT
CAAGTACCTTACAGGAGATCGTGTATACTACAAGAGAAATGATAGCAACG
AATGGAAGGGTCCTGGAACTGTGCTTGGTCAGGACGGTCAGCAAATTCTA
GTCAAACATGGGAGTTACTATGTTTGTGTTCATCCT

Coding sequence (CDS) from alignment at sc0005030:7..492

>TCONS_00044129 ID=TCONS_00044129|Name=TCONS_00044129|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0005030:7..492 (Clytia hemisphaerica)
CCATACCAATTATCCATTGGAACGAATCCACAGTTGCCTTCACTAATAGA
TGATAAACCACCAGCTTTATCAGGGAAACCAGCGACACAAATGATGAAAG
AAAATCTTGAAGTACTTCACAAAGCAAGAGAAGCCTTTATTGCAAGCGAA
CACTCAGAGAGAATACGTCGCGCTTTAGCCCACAACATTAGGACTTCAGG
AGAAATCAAGTACCTTACAGGAGATCGTGTATACTACAAGAGAAATGATA
GCAACGAATGGAAGGGTCCNAGAAGCCTTTATTGCAAGCGAACACTCAGA
GAGAATACGTCGCGCTTTAGCCCACAACATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027776XLOC_027776Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044129-proteinTCONS_00044129-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044129-exon-sc0005030-1491911889:7..492TCONS_00044129-exon-sc0005030-1491911889:7..492Clytia hemisphaericaexon
TCONS_00044129-exon-sc0005030-1510915933:7..492TCONS_00044129-exon-sc0005030-1510915933:7..492Clytia hemisphaericaexon
TCONS_00044129-exon-sc0005030-1575043694:7..492TCONS_00044129-exon-sc0005030-1575043694:7..492Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005030supercontigsc0005030:7..492 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.554505	0.648363	0	0.767807	0.345442	0.136486	1.59116	1.38742	0.598683	0.75489	0	0.320106	0.165021	0.584223	0.557867	0.820979	0.121142	0.477573	0.408451	0.354779	1.37199	0.749703	0.146852	0.342147	0.510436	0.741851	0.437036	1.20731	0.529915	0.144836
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044129 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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