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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044122 ID=TCONS_00044122|Name=TCONS_00044122|organism=Clytia hemisphaerica|type=transcript|length=1541bp NNAACTTCGACCGGTCAGGAAATCGAATGCAATTATCTCATCTCTGGTAT AGGAGCTTTACATGTCCCTAAATTCCCCAGTTTGAAAGGAATGAATGAAT TTCAAGGAGAGCATTTTCACACTGCTCAATGGAAAGACGATTTTGATTGG TCAGGAAAACGTGTTGGAATTATCGGTACCGGCTGTTCAGCCGTCCAAGT CGTTCCATCCATTGCAGAGCGTTGTAAAGATCTCTATGTCTTCCAGAGGA CGCCATCTTGGATCGTACCCAGACCTTCGTTCCCATACCCCTCTCTCCTT CAAAGGTGTTTCCAGATGTTCCCTTTTACTATGAAGCTTCACCGGTTGTA CATTTTCTGTCGCGGCGAAATCCTTTTCCAAATGGCTTTCCATAAAGGAT CAAAGCTAGCGGAGACGATGAAGACGATGTCTAAATTTCTTATGCAAGGG GAAATCAACGACCCAGAGCTGAAAGAGAAATTAACACCAAGCTACGACAT AGGATGTAAGCGTGTCACCATCTCAAACGATTATTTGAAATCGTTCAATC GTCCAAACGTTCATCTTATCACTGAACCGATTCAAGAAATTACCCATGAT TCCATTCTCCTCAAAAACACCCAAGATGCATCATCGAAAGAAGTGGAATT GGATGCGATCATTTATGCAACAGGATTTGACGTTTTGGAAAGTACGAAAA ATATGGATatcaaaaacccaaaaaacgGAAAATCTTTATCAACAATTTGG GGAGAGACACCGAATGCTTACTTGGGGATCATGGCAGCCGAAATACCGAA CTTTTTCATCATACTTGGACCAGCAACAGGACTCGGCCACAATAGCGTAG TGTTTATGATCGAGCGACAAGTAGATTTTATCATCAAAATGATCACACAA AATATTGAACAAGGTCATGCAGTTGTTGAGGTGAAAGATGAAGCGAACAC AGCGTATCAAGAAAGTATCCGGAAACAAACCAAAGACCGGGTGTTCAGTT CCGGTTGTGATAGTTGGTACCAGAATTCGGAAGGCTTTACATACATTCTG TGGCCTTCTCACTGTGTCAGCTATTGGTGGAGAACTTTGTTCATCAATCg gaatcatttcaatttttcgtgaATTGGAATAAATCGCATCTTTCATAATA GAGACAATTTGTTGTGTTTTTAatgggcccggggggggggggtattaggt ttaccaactgacgtaTGTGCGGCGAAAGAAAATCGATGAAATTCATACTC TTACAttgcatttttctcaaattttcgacTCCTTTAGAGGAAAAATATCA GAATTTCCAtggatttgctgaaatttccacccatacagtgcatttttgAA AGGTCCATTCTTCTCTCCTGAAAAACATACTCTTAACAACCGTCgtacat acccgtcggtcaatttgttTGACTGATGAACCTTTAGTAAGATAATCTTT GaaataatgaataaatgaaACTCAAAGCTGGAAGCCATTAATGGACTGGG ATCGAGTTGTAGAAGTGTTTTATATTTGTAACTATGTATGG Run BLAST on NCBI protein sequence of TCONS_00044122-protein >TCONS_00044122-protein ID=TCONS_00044122-protein|Name=TCONS_00044122-protein|organism=Clytia hemisphaerica|type=polypeptide|length=373bp
XTSTGQEIECNYLISGIGALHVPKFPSLKGMNEFQGEHFHTAQWKDDFDW SGKRVGIIGTGCSAVQVVPSIAERCKDLYVFQRTPSWIVPRPSFPYPSLL QRCFQMFPFTMKLHRLYIFCRGEILFQMAFHKGSKLAETMKTMSKFLMQG EINDPELKEKLTPSYDIGCKRVTISNDYLKSFNRPNVHLITEPIQEITHD SILLKNTQDASSKEVELDAIIYATGFDVLESTKNMDIKNPKNGKSLSTIW GETPNAYLGIMAAEIPNFFIILGPATGLGHNSVVFMIERQVDFIIKMITQ NIEQGHAVVEVKDEANTAYQESIRKQTKDRVFSSGCDSWYQNSEGFTYIL WPSHCVSYWWRTLFINRNHFNFS Run BLAST on NCBI transcript from alignment at sc0005000:1..2484- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044122 ID=TCONS_00044122|Name=TCONS_00044122|organism=Clytia hemisphaerica|type=transcript|length=2484bp|location=Sequence derived from alignment at sc0005000:1..2484- (Clytia hemisphaerica) NNAACTTCGACCGGTCAGGAAATCGAATGCAATTATCTCATCTCTGGTAT
AGGAGCTTTACATGTCCCTAAATTCCCCAGTTTGAAAGGAATGAATGAAT
TTCAAGGTGAGAATTTTCACACTGCTCAATGGAAAGACGATTTTGATTGG
TCCNCAAGGAGAGCATTTTCACACTGCTCAATGGAAAGACGATTTTGATT
GGTCAGGAAAACGTGTTGGAATTATCGGTACCGGCTGTTCAGCCGTCCAA
GTCGTTCCATCCATTGCAGAGCGTTGTAAAGATCTCTATGTCTTCCAGAG
GACGCCATCTTGGATCGTACCCAGACCTTCGTTCCCATACCCCTCTCTCC
TTCAAAGGTGTTTCCAGATGTTCCCTTTTACTATGAAGCTTCACCGGTTG
TACATTTTCTGTCGCGGCGAAATCCTTTTCCAAATGGCTTTCCATAAAGG
ATCAAAGCTAGCGGAGACGATGAAGACGATGTCTAAATTTCTTATGCAAG
GGGAAATCAACGACCCAGAGCTGAAAGAGAAATTAACACCAAGCTACGAC
ATAGGATGTAAGCGTGTCACCATCTCAAACGATTATTTGAAATCGTTCAA
TCGTCCAAACGTTCATCTTATCACTGAACCGATTCAAGAAATTACCCATG
ATTCCATTCTCCTCAAAAACACCCAAGATGCATCATCGAAAGAAGTGGAA
TTGGATGCGATCATTTATGCAACAGGATTTGACGTTTTGGAAAGTACGAA
AAATATGGATATCAAAAACCCAAAAAACGGAAAATCTTTATCAACAATTT
GGGGAGAGACACCGAATGCTTACTTGGGGATCATGGCAGCCGAAATACCG
AACTTTTTCATCATACTTGGACCAGCAACAGGACTCGGTAAGAACTGCTC
CAGTTACATCAAAATACTATTCGATCTTTTCCATCTTCCTCTTTTTCAAT
TCTTGATTACTTTCGAAAAGCAAACATTCAGTCCCCTGTCCATTTCGATT
CTATCCTCTGTTTGAGCCATAGGCGAGCCAGTGCAGTCCTGATAAGTCCC
AATAAGGACGAAGTCTATACACACTTTAAACCTAAATCTACTGAGTGAAT
ATAGTTGGATAGAAATGATAATTTCTTCACGCATAATCCTTTATAAGTAA
GGTGGATCGGCTTTTTGAACTTCTCAAGTTTCTATACAAGGTTCTATCTA
AGGGTCAGGGCATATCCCTTTTTGAGTCACTTTAAAGGCACGAAAAATAT
GCAAATCTAAAATTTCTCCTCTAAGGTTAAGAAATTCTTTTAATGAACCC
TTTCGTGGTTACATCTCTGAGATGAAGTAAATTTTAATTCTAAAGCTAGA
TTGCACTGCCTTGGTTCGATTATCGGTCGAAGAGAGAGTGGTTTTTACAT
TTGTTTTTTTGCTTTTAATTACAGGCCACAATAGCGTAGTGTTTATGATC
GAGCGACAAGTAGATTTTATCATCAAAATGATCACACAAAATATTGAACA
AGGTCATGCAGTTGTTGAGGTATGTTCACATATTGTATTTGTTGGCGCAA
GAGGTTCTTTTAACGTTTATTTAATGTTTTATTGATTTCATGGACATTAT
ATGGATGCTTGTTTAACGTTTCGCGATAGCTTGGGGTCACTCAGTATCAA
GATTCCAATTAGATAAGACACTCAACGTGTACAAATTTCAAATATTCTTG
CTTGACCTTAATCTCGCCTTGAATTATCATAATATTTGCGATAGGTTCGA
GCATTGATTCGCTGATATTTGCAATATTTTTTGAGACATACTTCATAGTT
CAATAAGGTAATCATACATAAAGATAGCTCATAAATAGTTCTAAAGTCTT
TTTTTCTTAACTTTCCAACTTAGGTGAAAGATGAAGCGAACACAGCGTAT
CAAGAAAGTATCCGGAAACAAACCAAAGACCGGGTGTTCAGTTCCGGTTG
TGATAGTTGGTACCAGAATTCGGAAGGCTTTACATACATTCTGTGGCCTT
CTCACTGTGTCAGCTATTGGTGGAGAACTTTGTTCATCAATCGGAATCAT
TTCAATTTTTCGTGAATTGGAATAAATCGCATCTTTCATAATAGAGACAA
TTTGTTGTGTTTTTAATGGGCCCGGGGGGGGGGGGTATTAGGTTTACCAA
CTGACGTATGTGCGGCGAAAGAAAATCGATGAAATTCATACTCTTACATT
GCATTTTTCTCAAATTTTCGACTCCTTTAGAGGAAAAATATCAGAATTTC
CATGGATTTGCTGAAATTTCCACCCATACAGTGCATTTTTGAAAGGTCCA
TTCTTCTCTCCTGAAAAACATACTCTTAACAACCGTCGTACATACCCGTC
GGTCAATTTGTTTGACTGATGAACCTTTAGTAAGATAATCTTTGAAATAA
TGAATAAATGAAACTCAAAGCTGGAAGCCATTAATGGACTGGGATCGAGT
TGTAGAAGTGTTTTATATTTGTAACTATGTATGG Coding sequence (CDS) from alignment at sc0005000:1..2484- >TCONS_00044122 ID=TCONS_00044122|Name=TCONS_00044122|organism=Clytia hemisphaerica|type=CDS|length=4488bp|location=Sequence derived from alignment at sc0005000:1..2484- (Clytia hemisphaerica) GTGAAAGATGAAGCGAACACAGCGTATCAAGAAAGTATCCGGAAACAAAC CAAAGACCGGGTGTTCAGTTCCGGTTGTGATAGTTGGTACCAGAATTCGG AAGGCTTTACATACATTCTGTGGCCTTCTCACTGTGTCAGCTATTGGTGG AGAACTTTGTTCATCAATCGGAATCATTTCAATTTTTCGTGAGCCACAAT AGCGTAGTGTTTATGATCGAGCGACAAGTAGATTTTATCATCAAAATGAT CACACAAAATATTGAACAAGGTCATGCAGTTGTTGAGGAGAGCATTTTCA CACTGCTCAATGGAAAGACGATTTTGATTGGTCAGGAAAACGTGTTGGAA TTATCGGTACCGGCTGTTCAGCCGTCCAAGTCGTTCCATCCATTGCAGAG CGTTGTAAAGATCTCTATGTCTTCCAGAGGACGCCATCTTGGATCGTACC CAGACCTTCGTTCCCATACCCCTCTCTCCTTCAAAGGTGTTTCCAGATGT TCCCTTTTACTATGAAGCTTCACCGGTTGTACATTTTCTGTCGCGGCGAA ATCCTTTTCCAAATGGCTTTCCATAAAGGATCAAAGCTAGCGGAGACGAT GAAGACGATGTCTAAATTTCTTATGCAAGGGGAAATCAACGACCCAGAGC TGAAAGAGAAATTAACACCAAGCTACGACATAGGATGTAAGCGTGTCACC ATCTCAAACGATTATTTGAAATCGTTCAATCGTCCAAACGTTCATCTTAT CACTGAACCGATTCAAGAAATTACCCATGATTCCATTCTCCTCAAAAACA CCCAAGATGCATCATCGAAAGAAGTGGAATTGGATGCGATCATTTATGCA ACAGGATTTGACGTTTTGGAAAGTACGAAAAATATGGATATCAAAAACCC AAAAAACGGAAAATCTTTATCAACAATTTGGGGAGAGACACCGAATGCTT ACTTGGGGATCATGGCAGCCGAAATACCGAACTTTTTCATCATACTTGGA CCAGCAACAGGACTCGNNAACTTCGACCGGTCAGGAAATCGAATGCAATT ATCTCATCTCTGGTATAGGAGCTTTACATGTCCCTAAATTCCCCAGTTTG AAAGGAATGAATGAATTTCAAGGTGAAAGATGAAGCGAACACAGCGTATC AAGAAAGTATCCGGAAACAAACCAAAGACCGGGTGTTCAGTTCCGGTTGT GATAGTTGGTACCAGAATTCGGAAGGCTTTACATACATTCTGTGGCCTTC TCACTGTGTCAGCTATTGGTGGAGAACTTTGTTCATCAATCGGAATCATT TCAATTTTTCGTGAGCCACAATAGCGTAGTGTTTATGATCGAGCGACAAG TAGATTTTATCATCAAAATGATCACACAAAATATTGAACAAGGTCATGCA GTTGTTGAGGAGAGCATTTTCACACTGCTCAATGGAAAGACGATTTTGAT TGGTCAGGAAAACGTGTTGGAATTATCGGTACCGGCTGTTCAGCCGTCCA AGTCGTTCCATCCATTGCAGAGCGTTGTAAAGATCTCTATGTCTTCCAGA GGACGCCATCTTGGATCGTACCCAGACCTTCGTTCCCATACCCCTCTCTC CTTCAAAGGTGTTTCCAGATGTTCCCTTTTACTATGAAGCTTCACCGGTT GTACATTTTCTGTCGCGGCGAAATCCTTTTCCAAATGGCTTTCCATAAAG GATCAAAGCTAGCGGAGACGATGAAGACGATGTCTAAATTTCTTATGCAA GGGGAAATCAACGACCCAGAGCTGAAAGAGAAATTAACACCAAGCTACGA CATAGGATGTAAGCGTGTCACCATCTCAAACGATTATTTGAAATCGTTCA ATCGTCCAAACGTTCATCTTATCACTGAACCGATTCAAGAAATTACCCAT GATTCCATTCTCCTCAAAAACACCCAAGATGCATCATCGAAAGAAGTGGA ATTGGATGCGATCATTTATGCAACAGGATTTGACGTTTTGGAAAGTACGA AAAATATGGATATCAAAAACCCAAAAAACGGAAAATCTTTATCAACAATT TGGGGAGAGACACCGAATGCTTACTTGGGGATCATGGCAGCCGAAATACC GAACTTTTTCATCATACTTGGACCAGCAACAGGACTCGNNAACTTCGACC GGTCAGGAAATCGAATGCAATTATCTCATCTCTGGTATAGGAGCTTTACA TGTCCCTAAATTCCCCAGTTTGAAAGGAATGAATGAATTTCAAGGTGAAA GATGAAGCGAACACAGCGTATCAAGAAAGTATCCGGAAACAAACCAAAGA CCGGGTGTTCAGTTCCGGTTGTGATAGTTGGTACCAGAATTCGGAAGGCT TTACATACATTCTGTGGCCTTCTCACTGTGTCAGCTATTGGTGGAGAACT TTGTTCATCAATCGGAATCATTTCAATTTTTCGTGAGCCACAATAGCGTA GTGTTTATGATCGAGCGACAAGTAGATTTTATCATCAAAATGATCACACA AAATATTGAACAAGGTCATGCAGTTGTTGAGGAGAGCATTTTCACACTGC TCAATGGAAAGACGATTTTGATTGGTCAGGAAAACGTGTTGGAATTATCG GTACCGGCTGTTCAGCCGTCCAAGTCGTTCCATCCATTGCAGAGCGTTGT AAAGATCTCTATGTCTTCCAGAGGACGCCATCTTGGATCGTACCCAGACC TTCGTTCCCATACCCCTCTCTCCTTCAAAGGTGTTTCCAGATGTTCCCTT TTACTATGAAGCTTCACCGGTTGTACATTTTCTGTCGCGGCGAAATCCTT TTCCAAATGGCTTTCCATAAAGGATCAAAGCTAGCGGAGACGATGAAGAC GATGTCTAAATTTCTTATGCAAGGGGAAATCAACGACCCAGAGCTGAAAG AGAAATTAACACCAAGCTACGACATAGGATGTAAGCGTGTCACCATCTCA AACGATTATTTGAAATCGTTCAATCGTCCAAACGTTCATCTTATCACTGA ACCGATTCAAGAAATTACCCATGATTCCATTCTCCTCAAAAACACCCAAG ATGCATCATCGAAAGAAGTGGAATTGGATGCGATCATTTATGCAACAGGA TTTGACGTTTTGGAAAGTACGAAAAATATGGATATCAAAAACCCAAAAAA CGGAAAATCTTTATCAACAATTTGGGGAGAGACACCGAATGCTTACTTGG GGATCATGGCAGCCGAAATACCGAACTTTTTCATCATACTTGGACCAGCA ACAGGACTCGNNAACTTCGACCGGTCAGGAAATCGAATGCAATTATCTCA TCTCTGGTATAGGAGCTTTACATGTCCCTAAATTCCCCAGTTTGAAAGGA ATGAATGAATTTCAAGGTGAAAGATGAAGCGAACACAGCGTATCAAGAAA GTATCCGGAAACAAACCAAAGACCGGGTGTTCAGTTCCGGTTGTGATAGT TGGTACCAGAATTCGGAAGGCTTTACATACATTCTGTGGCCTTCTCACTG TGTCAGCTATTGGTGGAGAACTTTGTTCATCAATCGGAATCATTTCAATT TTTCGTGAGCCACAATAGCGTAGTGTTTATGATCGAGCGACAAGTAGATT TTATCATCAAAATGATCACACAAAATATTGAACAAGGTCATGCAGTTGTT GAGGAGAGCATTTTCACACTGCTCAATGGAAAGACGATTTTGATTGGTCA GGAAAACGTGTTGGAATTATCGGTACCGGCTGTTCAGCCGTCCAAGTCGT TCCATCCATTGCAGAGCGTTGTAAAGATCTCTATGTCTTCCAGAGGACGC CATCTTGGATCGTACCCAGACCTTCGTTCCCATACCCCTCTCTCCTTCAA AGGTGTTTCCAGATGTTCCCTTTTACTATGAAGCTTCACCGGTTGTACAT TTTCTGTCGCGGCGAAATCCTTTTCCAAATGGCTTTCCATAAAGGATCAA AGCTAGCGGAGACGATGAAGACGATGTCTAAATTTCTTATGCAAGGGGAA ATCAACGACCCAGAGCTGAAAGAGAAATTAACACCAAGCTACGACATAGG ATGTAAGCGTGTCACCATCTCAAACGATTATTTGAAATCGTTCAATCGTC CAAACGTTCATCTTATCACTGAACCGATTCAAGAAATTACCCATGATTCC ATTCTCCTCAAAAACACCCAAGATGCATCATCGAAAGAAGTGGAATTGGA TGCGATCATTTATGCAACAGGATTTGACGTTTTGGAAAGTACGAAAAATA TGGATATCAAAAACCCAAAAAACGGAAAATCTTTATCAACAATTTGGGGA GAGACACCGAATGCTTACTTGGGGATCATGGCAGCCGAAATACCGAACTT TTTCATCATACTTGGACCAGCAACAGGACTCGNNAACTTCGACCGGTCAG GAAATCGAATGCAATTATCTCATCTCTGGTATAGGAGCTTTACATGTCCC TAAATTCCCCAGTTTGAAAGGAATGAATGAATTTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00044122-exon-sc0005000-1575043694:2379..2484 | TCONS_00044122-exon-sc0005000-1575043694:2379..2484 | Clytia hemisphaerica | exon |
| TCONS_00044122-exon-sc0005000-1575043694:1598..2326 | TCONS_00044122-exon-sc0005000-1575043694:1598..2326 | Clytia hemisphaerica | exon |
| TCONS_00044122-exon-sc0005000-1575043694:966..1060 | TCONS_00044122-exon-sc0005000-1575043694:966..1060 | Clytia hemisphaerica | exon |
| TCONS_00044122-exon-sc0005000-1575043694:1..611 | TCONS_00044122-exon-sc0005000-1575043694:1..611 | Clytia hemisphaerica | exon |
| TCONS_00044122-exon-sc0005000-1510915933:2379..2484 | TCONS_00044122-exon-sc0005000-1510915933:2379..2484 | Clytia hemisphaerica | exon |
| TCONS_00044122-exon-sc0005000-1510915933:1598..2326 | TCONS_00044122-exon-sc0005000-1510915933:1598..2326 | Clytia hemisphaerica | exon |
| TCONS_00044122-exon-sc0005000-1510915933:966..1060 | TCONS_00044122-exon-sc0005000-1510915933:966..1060 | Clytia hemisphaerica | exon |
| TCONS_00044122-exon-sc0005000-1510915933:1..611 | TCONS_00044122-exon-sc0005000-1510915933:1..611 | Clytia hemisphaerica | exon |
| TCONS_00044122-exon-sc0005000-1491911889:2379..2484 | TCONS_00044122-exon-sc0005000-1491911889:2379..2484 | Clytia hemisphaerica | exon |
| TCONS_00044122-exon-sc0005000-1491911889:1598..2326 | TCONS_00044122-exon-sc0005000-1491911889:1598..2326 | Clytia hemisphaerica | exon |
| TCONS_00044122-exon-sc0005000-1491911889:966..1060 | TCONS_00044122-exon-sc0005000-1491911889:966..1060 | Clytia hemisphaerica | exon |
| TCONS_00044122-exon-sc0005000-1491911889:1..611 | TCONS_00044122-exon-sc0005000-1491911889:1..611 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0005000 | supercontig | sc0005000:1..2484 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
| IPR020946 | Flavin_mOase-like |
| IPR023753 | FAD/NAD-binding_dom |
Vocabulary: Biological Process
| Term | Definition |
| GO:0055114 | oxidation-reduction process |
Vocabulary: Molecular Function
| Term | Definition |
| GO:0004499 | N,N-dimethylaniline monooxygenase activity |
| GO:0050661 | NADP binding |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0016491 | oxidoreductase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0050660 |
flavin adenine dinucleotide binding |
| molecular_function |
GO:0050661 |
NADP binding |
| molecular_function |
GO:0004499 |
N,N-dimethylaniline monooxygenase activity |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
Blast
The following BLAST results are available for this feature:
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