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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044105 ID=TCONS_00044105|Name=TCONS_00044105|organism=Clytia hemisphaerica|type=transcript|length=838bp
AGCCATCTTTTTGATGGTTCAATATACGAGATTGATGAAACATGGCTTTT
TCGTTTTGTGGACTaagaaaaataagacaatttttgATTCTAGTCATTCT
GTTTTTCGTATTTTTCATAGCAGTTTTCTACTTACATAGAGaacGTCTTA
AATGCCGAGCGAATCCACTGAAGAATATAGCTGTTGTACTTGTCTTCAAT
TCTCCATATTACGAAAACGTTCCAATCCTTCAAAAGATGTATGGTAACGT
GTTCGGAAAGCTCGTATTTTGTGGAGAGCAACCACGCACAGGAGGtataa
attacagaccagatattGTACTGAATATTAATCAAGGGCATTTGGCTTAC
CATTGTGCTGCAAAACTCATTCAACTTTACCCaggattttcagGTTATTT
GTACGGCAACGATGATATGATCATCAATTGGTGGAATTTGGTTAATCgag
atcaaaacaaaatttggcaaggtgcTCAAATTNCAATTGGTGGAATTTGG
TTAATCgagatcaaaacaaaatttggcaaggtgcTCAAATTGTGGACTTC
ACTCAAACGTTACACGGAAAAATCAACACTGAatggatttggtggaattc
ttACATGGGACTTACAGCATGTCGGAAATTCTATCAAGAAATAATCGAGC
TAAGTAAAACATCATTATCTTTTGACTCGATGTATCACGTGGCACTACAT
AATGGTAACGGCCACCCTCGTTGTGGAAAAGGGTGGTCCGATTTCTTTTA
CATTCCGGGTCGTTTTACGACGGCCTTTGTACAACTATCAGAAATTGCCT
ACAAACATAAGACTTTTCTTGAAATAGCAGTTAATAAT Run BLAST on NCBI protein sequence of TCONS_00044105-protein >TCONS_00044105-protein ID=TCONS_00044105-protein|Name=TCONS_00044105-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MAFSFCGLRKIRQFLILVILFFVFFIAVFYLHRERLKCRANPLKNIAVVL
VFNSPYYENVPILQKMYGNVFGKLVFCGEQPRTGGINYRPDIVLNINQGH
LAYHCAAKLIQLYPGFSGYLYGNDDMIINWWNLVNRDQNKIWQGAQIXIG
GIWLIEIKTKFGKVLKLWTSLKRYTEKSTLNGFGGILTWDLQHVGNSIKK Run BLAST on NCBI transcript from alignment at sc0004976:1270..4649+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044105 ID=TCONS_00044105|Name=TCONS_00044105|organism=Clytia hemisphaerica|type=transcript|length=3380bp|location=Sequence derived from alignment at sc0004976:1270..4649+ (Clytia hemisphaerica)
AGCCATCTTTTTGATGGTTCAATATACGAGATTGATGAAACATGGCTTTT
TCGTTTTGTGGACTaagaaaaataagacaatttttgATTCTAGTCATTCT
GTTTTTCGTATTTTTCATAGCAGTTTTCTACTTACATAGAGGTAAGTTCC
AGGgtgtactaggtttgcgaggtgacgggtatgtccgagccaaaccGACC
TTTTGATaagcttctgctcatcctctagcgaaaagaaTTTCTCATAGATA
TATATAGTATATTCatagaggtctgcaattcagactaACCTTTTCAGAGA
CTGGGTTTCGCCGTTTTTGTGATCCTTTGAGagactatttttcaaaatta
ccagATATGACCCTTTGAGGGTGTCGATTTCTTATATTTTGTAATTTAGG
TTGGGACTCTTTAGAGCATCAATTGCTAATTCATCgttttttgtaaccct
tagagagacttttagAGAGTTTAAAATAGGggcccttatggctcgcacat
acctgaCACCCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggagcacccccgtcggtc
gacaagggtagtccCCCCCCGGGGCCAAATCGACCTTTTGATAAGCTTCT
GCTCATCCCCTAGCGAAAAGAATTTCTCATAGATATATATAGTATATTCa
tagaggtctgcaattcagactaACCTTTTCAGAGACTGAGTTTCGCCGTA
TTTGTGATCCTTTGAGggactatttttcaaaattaccagATATGACCCTT
TGAGGGTGTCGATTTcttatattttgtaattttggttGGGACTCTTTAGA
GCATCAATTGCTAATTCATCgttttttgtaacccttagagagacttttag
AGAGTTTAAGATAGGggcccttatggctcgcacatacctgaCACCCATTT
TGaccaagtaccccccccccccgggagagAATCAACTGTATGCGTTAAAT
CAATTAGGACCGTAGAAAGGGCCATCAAGAGATCCGATTACAGCACCTAC
TTGATtggtttgaaatcttttatgAGTTTTATCTTCTCGTTTGTAAATTG
AAGTGGTGCTTCTCCAAACTACGTCTGTTTTTGATGCCCGAATAACTTTT
ATAAAACTGTCTATCAAAGNggccctgtcagatatgaatatttggtaact
ttgggaccctgtcagaaattCCAttctgaaaagtgaaaaaaaggaaaatc
ttctaatttccaccctgagaattgtcaaaaaattaccaaaagtaGACCCT
GTCAGTAAcatatcttgaaaattagtaaatttgggacccttaAAATAGGG
ACCCTGACCCCtaaccagcggcacgtccccgtacccaattttgcctaagt
gctcCCACCCCTGCGGGAATTATCGTAAAAAATATTCAGTTGTGAGAATC
TAGATCATTGGATCCCCCTGGACCCCCCTGGACTatgcttctgctcatcc
tccaacgaaaattatttttatgaaGTAAAACTATAGAGGTCTTCGAAACA
GACTATCAACAATCATCATTGCCTCAAAACTtatgttaatatttttttct
tcagaacGTCTTAAATGCCGAGCGAATCCACTGAAGAATATAGCTGTTGT
ACTTGTCTTCAATTCTCCATATTACGAAAACGTTCCAATCCTTCAAAAGA
TGTATGGTAACGTGTTCGGAAAGCTCGTATTTTGTGGAGAGCAACCACGC
ACAGGAGGtataaattacagaccagatattGTACTGAATATTAATCAAGG
GCATTTGGCTTACCATTGTGCTGCAAAACTCATTCAACTTTACCCaggat
tttcaggtacttaaaaTAGAAACATTTTTGCCTGATACTCATCCCTATAT
TTCCACTCATGTCTTAGGGCCCtttcaaatttaaaatccaTCGTCTTAGC
CGATTTTCACCAAAAGTTAAGCTTATATTTCTGTAGAATTGTTCTTAAGA
AAGAACGTGTAAAGTTTTAAATCTATACATTCTCTTCTTTTATAAGGGCC
AGTAGATTTTTAATGAGGCTCGgctgttattatttttttgacactttgag
cctcaaattgttcttatcctgttcttatttatagggtgaaaTTGAGGTAT
CTTAAGCTTAATaccaaatttttattattttgacatCTAAATTGCTTAAA
TTGAGTAATtccagcattgttcttaaattgttctcatGTTTTGcggattt
tgagcctcgttgctCTCTCGGAATGGTCCATTTGGCatacgaaaaaatat
tttttttcggcGCCTCCGTCTATTATATTGCAATTCCTAAAGCAGACGGT
TCTAAAGGGGGGGGTTCATGGTttgcggaggagcggaatcggtccttttt
tcggacggagtggcggaatttggcgaaaatttagacggaattacggaaat
tgggttctctgacggagacggaaaattagacaattttagtgcggaaaaac
ggaatttggcaaaaacacttgcggaatttcggaattagCAAAAAATATTC
GGGACCCCTTGAAATGGGCCTAAGTGTGAAGAAACCTAGGAGAAGATTAC
TATTTCCAACGAAAATATACTATTTTTTAATCCTTAAAATAAAATTGCAA
CTGAAGAGAACATAGCCCGTGTCACTAAGAAGGAATTGAAACCCTAACCC
TGTCACTTCATGATCCTGAGAGAAACtgctaatttttttaatatattttt
cgaaagttGAGATATTCAAGTTATAAGTTTATTATTCAACTTATAGCAAA
AACAGAGCAATAGACTTGTcccatttttaaagattttaaattttcacatc
TCGAATTTGAAATGGATTTCGGCCAAGAAATTTTGAAGTTTCTTACAGGA
CTACTATTAAGCgttattcttatttttattgataGGTTATTTGTACGGCA
ACGATGATATGATCATCAATTGGTGGAATTTGGTTAATCgagatcaaaac
aaaatttggcaaggtgcTCAAATTNCAATTGGTGGAATTTGGTTAATCga
gatcaaaacaaaatttggcaaggtgcTCAAATTGTGGACTTCACTCAAAC
GTTACACGGAAAAATCAACACTGAatggatttggtggaattcttACATGG
GACTTACAGCATGTCGGAAATTCTATCAAGAAATAATCGAGCTAAGTAAA
ACATCATTATCTTTTGACTCGATGTATCACGTGGCACTACATAATGGTAA
CGGCCACCCTCGTTGTGGAAAAGGGTGGTCCGATTTCTTTTACATTCCGG
GTCGTTTTACGACGGCCTTTGTACAACTATCAGAAATTGCCTACAAACAT
AAGACTTTTCTTGAAATAGCAGTTAATAAT Coding sequence (CDS) from alignment at sc0004976:1270..4649+ >TCONS_00044105 ID=TCONS_00044105|Name=TCONS_00044105|organism=Clytia hemisphaerica|type=CDS|length=1809bp|location=Sequence derived from alignment at sc0004976:1270..4649+ (Clytia hemisphaerica)
ATGGCTTTTTCGTTTTGTGGACTaagaaaaataagacaatttttgATTCT
AGTCATTCTGTTTTTCGTATTTTTCATAGCAGTTTTCTACTTACATAGAG
aacGTCTTAAATGCCGAGCGAATCCACTGAAGAATATAGCTGTTGTACTT
GTCTTCAATTCTCCATATTACGAAAACGTTCCAATCCTTCAAAAGATGTA
TGGTAACGTGTTCGGAAAGCTCGTATTTTGTGGAGAGCAACCACGCACAG
GAGGtataaattacagaccagatattGTACTGAATATTAATCAAGGGCAT
TTGGCTTACCATTGTGCTGCAAAACTCATTCAACTTTACCCaggattttc
agGTTATTTGTACGGCAACGATGATATGATCATCAATTGGTGGAATTTGG
TTAATCgagatcaaaacaaaatttggcaaggtgcTCAAATTNCAATTGGT
GGAATTTGGTTAATCgagatcaaaacaaaatttggcaaggtgcTCAAATT
GTGGACTTCACTCAAACGTTACACGGAAAAATCAACACTGAatggatttg
gtggaattcttACATGGGACTTACAGCATGTCGGAAATTCTATCAAGAAA
TAAATGGCTTTTTCGTTTTGTGGACTaagaaaaataagacaatttttgAT
TCTAGTCATTCTGTTTTTCGTATTTTTCATAGCAGTTTTCTACTTACATA
GAGaacGTCTTAAATGCCGAGCGAATCCACTGAAGAATATAGCTGTTGTA
CTTGTCTTCAATTCTCCATATTACGAAAACGTTCCAATCCTTCAAAAGAT
GTATGGTAACGTGTTCGGAAAGCTCGTATTTTGTGGAGAGCAACCACGCA
CAGGAGGtataaattacagaccagatattGTACTGAATATTAATCAAGGG
CATTTGGCTTACCATTGTGCTGCAAAACTCATTCAACTTTACCCaggatt
ttcagGTTATTTGTACGGCAACGATGATATGATCATCAATTGGTGGAATT
TGGTTAATCgagatcaaaacaaaatttggcaaggtgcTCAAATTNCAATT
GGTGGAATTTGGTTAATCgagatcaaaacaaaatttggcaaggtgcTCAA
ATTGTGGACTTCACTCAAACGTTACACGGAAAAATCAACACTGAatggat
ttggtggaattcttACATGGGACTTACAGCATGTCGGAAATTCTATCAAG
AAATAAATGGCTTTTTCGTTTTGTGGACTaagaaaaataagacaattttt
gATTCTAGTCATTCTGTTTTTCGTATTTTTCATAGCAGTTTTCTACTTAC
ATAGAGaacGTCTTAAATGCCGAGCGAATCCACTGAAGAATATAGCTGTT
GTACTTGTCTTCAATTCTCCATATTACGAAAACGTTCCAATCCTTCAAAA
GATGTATGGTAACGTGTTCGGAAAGCTCGTATTTTGTGGAGAGCAACCAC
GCACAGGAGGtataaattacagaccagatattGTACTGAATATTAATCAA
GGGCATTTGGCTTACCATTGTGCTGCAAAACTCATTCAACTTTACCCagg
attttcagGTTATTTGTACGGCAACGATGATATGATCATCAATTGGTGGA
ATTTGGTTAATCgagatcaaaacaaaatttggcaaggtgcTCAAATTNCA
ATTGGTGGAATTTGGTTAATCgagatcaaaacaaaatttggcaaggtgcT
CAAATTGTGGACTTCACTCAAACGTTACACGGAAAAATCAACACTGAatg
gatttggtggaattcttACATGGGACTTACAGCATGTCGGAAATTCTATC
AAGAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044105-exon-sc0004976-1491911889:1270..1410 | TCONS_00044105-exon-sc0004976-1491911889:1270..1410 | Clytia hemisphaerica | exon |
| TCONS_00044105-exon-sc0004976-1510915933:1270..1410 | TCONS_00044105-exon-sc0004976-1510915933:1270..1410 | Clytia hemisphaerica | exon |
| TCONS_00044105-exon-sc0004976-1575043694:1270..1410 | TCONS_00044105-exon-sc0004976-1575043694:1270..1410 | Clytia hemisphaerica | exon |
| TCONS_00044105-exon-sc0004976-1491911889:2874..3125 | TCONS_00044105-exon-sc0004976-1491911889:2874..3125 | Clytia hemisphaerica | exon |
| TCONS_00044105-exon-sc0004976-1510915933:2874..3125 | TCONS_00044105-exon-sc0004976-1510915933:2874..3125 | Clytia hemisphaerica | exon |
| TCONS_00044105-exon-sc0004976-1575043694:2874..3125 | TCONS_00044105-exon-sc0004976-1575043694:2874..3125 | Clytia hemisphaerica | exon |
| TCONS_00044105-exon-sc0004976-1491911889:4205..4649 | TCONS_00044105-exon-sc0004976-1491911889:4205..4649 | Clytia hemisphaerica | exon |
| TCONS_00044105-exon-sc0004976-1510915933:4205..4649 | TCONS_00044105-exon-sc0004976-1510915933:4205..4649 | Clytia hemisphaerica | exon |
| TCONS_00044105-exon-sc0004976-1575043694:4205..4649 | TCONS_00044105-exon-sc0004976-1575043694:4205..4649 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004976 | supercontig | sc0004976:1270..4649 + |
Blast
The following BLAST results are available for this feature:
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