TCONS_00044103 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044103
Unique NameTCONS_00044103
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length932

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044103 ID=TCONS_00044103|Name=TCONS_00044103|organism=Clytia hemisphaerica|type=transcript|length=932bp
GTTTCAAACAAGCGTAGAACCAACACGTCAGTCGTAAATGGCTAGAAACA
ACAAGTTCAATAAAAAACAAGGTGGGGAGAACACCTCTAAACTTCCACAG
GACACTTCCCAACTCAGTGAGGACACTTTTAGTACTCAGGATCGAGACAT
TCCAATGAGTCAACCCCAGCCAGAGATGGAAGCAGAAGCATTTGATGACA
TTCCATCAAGCCAACGAGAGTTAAAGGCAGAATCAAACTTCTCAAATGCA
GACACAGCTTTCCAAGATTCAAATGCAGGCCCTTCAACACCTACAAAATC
AATGCGAGTGGCGTCAACACCTAGACAATCAACGCCAAGCCCGTCAACAC
CAAAGAAACGTGGGTTAGAGGACACATATCatggttttgttttaaaatta
acAAATGTTACGACAGCTGGGTCACCGTCTAAATCGAAATATTTCAGAGC
AACACTGCATGACGGAGAAGATTTGAAATCAGTTGTTTCGTACAATCCAA
ACCTTCATCCAGTGATGAAGAAGGCAAAGTTGACAGACCAACCTGTCAAA
ATCTCTCAATTCACAGAAATTGTCAACAGCTATGACCATACAAAAGACTT
CAAATTGGGCAACCATTCAACAGTGGAACTTTCTTCGGCCCCGTTATCTT
TTGACCGAGTGAAAAATTTAATCCAAGAGTCCACCTCTATGACCAACATG
ATTGATGCTATTGACCAAGCTGTAGGTGATTTTGTCAACGTGGAAGTGTA
TGTAGAATTGGGTGACTCCACAATCGAAGAAGTTCCAACCAGATATGGAG
TTAAAAGGAAACGCGAAGCTCTTATTCATGATGCATCATGCAGCGTTCCA
ATAAGGTTCGCCATTTGGAATGCTCACATTGATGCCATGCCTACAAGTGG
ACCCTACAGGCTCATGGATGTGAAGATCAACA
Run BLAST on NCBI

protein sequence of TCONS_00044103-protein

>TCONS_00044103-protein ID=TCONS_00044103-protein|Name=TCONS_00044103-protein|organism=Clytia hemisphaerica|type=polypeptide|length=298bp
MARNNKFNKKQGGENTSKLPQDTSQLSEDTFSTQDRDIPMSQPQPEMEAE
AFDDIPSSQRELKAESNFSNADTAFQDSNAGPSTPTKSMRVASTPRQSTP
SPSTPKKRGLEDTYHGFVLKLTNVTTAGSPSKSKYFRATLHDGEDLKSVV
SYNPNLHPVMKKAKLTDQPVKISQFTEIVNSYDHTKDFKLGNHSTVELSS
APLSFDRVKNLIQESTSMTNMIDAIDQAVGDFVNVEVYVELGDSTIEEVP
TRYGVKRKREALIHDASCSVPIRFAIWNAHIDAMPTSGPYRLMDVKIN
Run BLAST on NCBI

transcript from alignment at sc0004972:4..2643-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044103 ID=TCONS_00044103|Name=TCONS_00044103|organism=Clytia hemisphaerica|type=transcript|length=2640bp|location=Sequence derived from alignment at sc0004972:4..2643- (Clytia hemisphaerica)
GTTTCAAACAAGCGTAGAACCAACACGTCAGTCGTAAATGGCTAGAAACA
ACAAGTTCAATAAAAAACAAGGTAATTTTTGAATTTACAATTAGTAATTG
AANAAATTGCAAATACACTATTTCTATCCGATATAATTTATTTACAGGAG
GTTTTACAAAACCTACTGGGAACGAGGTCGGATGGGACACAAACCGAAAT
TTATTTATTGGGTTGGGGATGAAAAAACGGAAAAAAATTAACAAGCAGGG
GGACCGTTTATTTGGCACCTGGGAGTAGTTGACACCGTGTAAAAAACGCT
GAGTCAGACTTAGGACCACACCTTGAATGTTACAGACCACATCAAATACA
AATGCGACAAAATATTTTTAATATCCGCAGTAATATTTGTTTACTAGTAC
ATCCTAAAACAATTATCTCACTTGGTCCCACCTTTAGTTGACTCCCTGTA
AAAAACGCTGAGTCAGACTTAGGACCACACCTTGAATGTTACGGACCAGA
TCAAATACAAATGCGACAAATTATTTTTAATACCCCCAGTAATATTTGTT
TACATCCTAAAACAATTATCTCACTTGGTCCCACCTTTAGTTGACTCCCT
GTAAAATAATGTGAAAGGTAAATGTTCCCCTAGCCCTTTCTAATCCTTTT
CGTTTCAAACAAGCGTAGAACCAACACGTCAGTCGTAAATGGCTAGAAAC
AACAAGTTCAATAAAAAACAAGGTAATTTTTGAATTTACAATTAGTAATT
GAATCATTAATCGAAATTGAATATCATTCATCGTGGATTTTCAAGTTTCT
AAGCTTTCTTGGGCATTAAACTATGATTTTTTTTGAGGAAAGAAAATCCT
CTTGACAAATCAAATTTCTAAACCCAAATAATTACTTCATAGGTGGGGAG
AACACCTCTAAACTTCCACAGGACACTTCCCAACTCAGTGAGGACACTTT
TAGTACTCAGGATCGAGACATTCCAATGAGTCAACCCCAGCCAGAGATGG
AAGCAGAAGCATTTGATGACATTCCATCAAGCCAACGAGAGTTAAAGGCA
GAATCAAACTTCTCAAATGCAGGTATATCATTATGAACGTGCACATTCAG
ACACTGTAAAAGCTAACATTAGATTAGGTCCCTTCCCTTTAGAGGGGGAG
TGGGGCAGGCATCGTTATTCTCAATTTCCTTGACATCTCTTGACCTGGCT
AGTAGGTTGTGATCCTGGGACAATTCATTATCCTCTTGTTCCCCAGAAGT
TATGTTGGCTAAACAAATTTCATTTGGCATTAGGTTTTCAGAGGGAATTA
TATTTGATTGATTCACCATAATTAATTTTGTTGAGAATTTAATTTCAAGG
ATGCTAACAGGTATCAAGGTTCAATTTCAAAGTGAAAATGTAAAATACAC
TTATTTTTCAGTGTTGTTTATTACCCTTGAAAAAATTTTCACCGAAATTC
CTTTTTGTGAGTATGGGGAAAAGAAATGTCAAAACCCTTTTTAAAGGTCC
CCTGATGGAAAAACTAAACAAAATGACACAAAATACGTATATTGGATTTT
ATTAATACAGGTATAATTAAATTACAGACACAGCTTTCCAAGATTCAAAT
GCAGGCCCTTCAACACCTACAAAATCAATGCGAGTGGCGTCAACACCTAG
ACAATCAACGCCAAGCCCGTCAACACCAAAGAAACGTGGGTTAGAGGACA
GTAAGTCTTGATGCTATAACAGTCAATTTCTTAGAAAAAGAAACATTTTA
ATTTTAGCTTACATCATGTTACTCAAATTTCTTCACATAAACTCATCAGC
AGCTATGTAAAACGAATAAATGCATCATTAATTTTCTCTACAATGACTCC
CTTGTCAATTATGTATCACTTATATATACTAAAATTTCTAGGATTTAGAA
GAGGGGTTTGTTGCTCACACTGTAGGCGTTTTGAAACTGAATTTTCAAAG
AAATTCCAAACATTTTATTAATAAACATCTTTTAGGTTGGAAATTAACAC
CTCCCCTCCTACAATTAAGCATAGAAGAGTACTTTGTGCTTTTCAGACTT
TCATGCTTGTTCTCATTCTGCTTTTTTTACAGCATATCATGGTTTTGTTT
TAAAATTAACAAATGTTACGACAGCTGGGTCACCGTCTAAATCGAAATAT
TTCAGAGCAACACTGCATGACGGAGAAGATTTGAAATCAGTTGTTTCGTA
CAATCCAAACCTTCATCCAGTGATGAAGAAGGCAAAGTTGACAGACCAAC
CTGTCAAAATCTCTCAATTCACAGAAATTGTCAACAGCTATGACCATACA
AAAGACTTCAAATTGGGCAACCATTCAACAGTGGAACTTTCTTCGGCCCC
GTTATCTTTTGACCGAGTGAAAAATTTAATCCAAGAGTCCACCTCTATGA
CCAACATGATTGATGCTATTGACCAAGCTGTAGGTGATTTTGTCAACGTG
GAAGTGTATGTAGAATTGGGTGACTCCACAATCGAAGAAGTTCCAACCAG
ATATGGAGTTAAAAGGAAACGCGAAGCTCTTATTCATGATGCATCATGCA
GCGTTCCAATAAGGTTCGCCATTTGGAATGCTCACATTGATGCCATGCCT
ACAAGTGGACCCTACAGGCTCATGGATGTGAAGATCAACA

Coding sequence (CDS) from alignment at sc0004972:4..2643-

>TCONS_00044103 ID=TCONS_00044103|Name=TCONS_00044103|organism=Clytia hemisphaerica|type=CDS|length=3576bp|location=Sequence derived from alignment at sc0004972:4..2643- (Clytia hemisphaerica)
CATATCATGGTTTTGTTTTAAAATTAACAAATGTTACGACAGCTGGGTCA
CCGTCTAAATCGAAATATTTCAGAGCAACACTGCATGACGGAGAAGATTT
GAAATCAGTTGTTTCGTACAATCCAAACCTTCATCCAGTGATGAAGAAGG
CAAAGTTGACAGACCAACCTGTCAAAATCTCTCAATTCACAGAAATTGTC
AACAGCTATGACCATACAAAAGACTTCAAATTGGGCAACCATTCAACAGT
GGAACTTTCTTCGGCCCCGTTATCTTTTGACCGAGTGAAAAATTTAATCC
AAGAGTCCACCTCTATGACCAACATGATTGATGCTATTGACCAAGCTGTA
GGTGATTTTGTCAACGTGGAAGTGTATGTAGAATTGGGTGACTCCACAAT
CGAAGAAGTTCCAACCAGATATGGAGTTAAAAGGAAACGCGAAGCTCTTA
TTCATGATGCATCATGCAGCGTTCCAATAAGGTTCGCCATTTGGAATGCT
CACATTGATGCCATGCCTACAAGTGGACCCTACAGGCTCATGGATGTGAA
GATCAACACACAGCTTTCCAAGATTCAAATGCAGGCCCTTCAACACCTAC
AAAATCAATGCGAGTGGCGTCAACACCTAGACAATCAACGCCAAGCCCGT
CAACACCAAAGAAACGTGGGTTAGAGGACAGTGGGGAGAACACCTCTAAA
CTTCCACAGGACACTTCCCAACTCAGTGAGGACACTTTTAGTACTCAGGA
TCGAGACATTCCAATGAGTCAACCCCAGCCAGAGATGGAAGCAGAAGCAT
TTGATGACATTCCATCAAGCCAACGAGAGTTAAAGGCAGAATCAAACTTC
TCAAATGCAGATGGCTAGAAACAACAAGTTCAATAAAAAACAAGCATATC
ATGGTTTTGTTTTAAAATTAACAAATGTTACGACAGCTGGGTCACCGTCT
AAATCGAAATATTTCAGAGCAACACTGCATGACGGAGAAGATTTGAAATC
AGTTGTTTCGTACAATCCAAACCTTCATCCAGTGATGAAGAAGGCAAAGT
TGACAGACCAACCTGTCAAAATCTCTCAATTCACAGAAATTGTCAACAGC
TATGACCATACAAAAGACTTCAAATTGGGCAACCATTCAACAGTGGAACT
TTCTTCGGCCCCGTTATCTTTTGACCGAGTGAAAAATTTAATCCAAGAGT
CCACCTCTATGACCAACATGATTGATGCTATTGACCAAGCTGTAGGTGAT
TTTGTCAACGTGGAAGTGTATGTAGAATTGGGTGACTCCACAATCGAAGA
AGTTCCAACCAGATATGGAGTTAAAAGGAAACGCGAAGCTCTTATTCATG
ATGCATCATGCAGCGTTCCAATAAGGTTCGCCATTTGGAATGCTCACATT
GATGCCATGCCTACAAGTGGACCCTACAGGCTCATGGATGTGAAGATCAA
CACACAGCTTTCCAAGATTCAAATGCAGGCCCTTCAACACCTACAAAATC
AATGCGAGTGGCGTCAACACCTAGACAATCAACGCCAAGCCCGTCAACAC
CAAAGAAACGTGGGTTAGAGGACAGTGGGGAGAACACCTCTAAACTTCCA
CAGGACACTTCCCAACTCAGTGAGGACACTTTTAGTACTCAGGATCGAGA
CATTCCAATGAGTCAACCCCAGCCAGAGATGGAAGCAGAAGCATTTGATG
ACATTCCATCAAGCCAACGAGAGTTAAAGGCAGAATCAAACTTCTCAAAT
GCAGATGGCTAGAAACAACAAGTTCAATAAAAAACAAGCATATCATGGTT
TTGTTTTAAAATTAACAAATGTTACGACAGCTGGGTCACCGTCTAAATCG
AAATATTTCAGAGCAACACTGCATGACGGAGAAGATTTGAAATCAGTTGT
TTCGTACAATCCAAACCTTCATCCAGTGATGAAGAAGGCAAAGTTGACAG
ACCAACCTGTCAAAATCTCTCAATTCACAGAAATTGTCAACAGCTATGAC
CATACAAAAGACTTCAAATTGGGCAACCATTCAACAGTGGAACTTTCTTC
GGCCCCGTTATCTTTTGACCGAGTGAAAAATTTAATCCAAGAGTCCACCT
CTATGACCAACATGATTGATGCTATTGACCAAGCTGTAGGTGATTTTGTC
AACGTGGAAGTGTATGTAGAATTGGGTGACTCCACAATCGAAGAAGTTCC
AACCAGATATGGAGTTAAAAGGAAACGCGAAGCTCTTATTCATGATGCAT
CATGCAGCGTTCCAATAAGGTTCGCCATTTGGAATGCTCACATTGATGCC
ATGCCTACAAGTGGACCCTACAGGCTCATGGATGTGAAGATCAACACACA
GCTTTCCAAGATTCAAATGCAGGCCCTTCAACACCTACAAAATCAATGCG
AGTGGCGTCAACACCTAGACAATCAACGCCAAGCCCGTCAACACCAAAGA
AACGTGGGTTAGAGGACAGTGGGGAGAACACCTCTAAACTTCCACAGGAC
ACTTCCCAACTCAGTGAGGACACTTTTAGTACTCAGGATCGAGACATTCC
AATGAGTCAACCCCAGCCAGAGATGGAAGCAGAAGCATTTGATGACATTC
CATCAAGCCAACGAGAGTTAAAGGCAGAATCAAACTTCTCAAATGCAGAT
GGCTAGAAACAACAAGTTCAATAAAAAACAAGCATATCATGGTTTTGTTT
TAAAATTAACAAATGTTACGACAGCTGGGTCACCGTCTAAATCGAAATAT
TTCAGAGCAACACTGCATGACGGAGAAGATTTGAAATCAGTTGTTTCGTA
CAATCCAAACCTTCATCCAGTGATGAAGAAGGCAAAGTTGACAGACCAAC
CTGTCAAAATCTCTCAATTCACAGAAATTGTCAACAGCTATGACCATACA
AAAGACTTCAAATTGGGCAACCATTCAACAGTGGAACTTTCTTCGGCCCC
GTTATCTTTTGACCGAGTGAAAAATTTAATCCAAGAGTCCACCTCTATGA
CCAACATGATTGATGCTATTGACCAAGCTGTAGGTGATTTTGTCAACGTG
GAAGTGTATGTAGAATTGGGTGACTCCACAATCGAAGAAGTTCCAACCAG
ATATGGAGTTAAAAGGAAACGCGAAGCTCTTATTCATGATGCATCATGCA
GCGTTCCAATAAGGTTCGCCATTTGGAATGCTCACATTGATGCCATGCCT
ACAAGTGGACCCTACAGGCTCATGGATGTGAAGATCAACACACAGCTTTC
CAAGATTCAAATGCAGGCCCTTCAACACCTACAAAATCAATGCGAGTGGC
GTCAACACCTAGACAATCAACGCCAAGCCCGTCAACACCAAAGAAACGTG
GGTTAGAGGACAGTGGGGAGAACACCTCTAAACTTCCACAGGACACTTCC
CAACTCAGTGAGGACACTTTTAGTACTCAGGATCGAGACATTCCAATGAG
TCAACCCCAGCCAGAGATGGAAGCAGAAGCATTTGATGACATTCCATCAA
GCCAACGAGAGTTAAAGGCAGAATCAAACTTCTCAAATGCAGATGGCTAG
AAACAACAAGTTCAATAAAAAACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027751XLOC_027751Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044103-exon-sc0004972-1575043694:2573..2643TCONS_00044103-exon-sc0004972-1575043694:2573..2643Clytia hemisphaericaexon
TCONS_00044103-exon-sc0004972-1575043694:1572..1751TCONS_00044103-exon-sc0004972-1575043694:1572..1751Clytia hemisphaericaexon
TCONS_00044103-exon-sc0004972-1575043694:944..1066TCONS_00044103-exon-sc0004972-1575043694:944..1066Clytia hemisphaericaexon
TCONS_00044103-exon-sc0004972-1575043694:4..561TCONS_00044103-exon-sc0004972-1575043694:4..561Clytia hemisphaericaexon
TCONS_00044103-exon-sc0004972-1510915933:2573..2643TCONS_00044103-exon-sc0004972-1510915933:2573..2643Clytia hemisphaericaexon
TCONS_00044103-exon-sc0004972-1510915933:1572..1751TCONS_00044103-exon-sc0004972-1510915933:1572..1751Clytia hemisphaericaexon
TCONS_00044103-exon-sc0004972-1510915933:944..1066TCONS_00044103-exon-sc0004972-1510915933:944..1066Clytia hemisphaericaexon
TCONS_00044103-exon-sc0004972-1510915933:4..561TCONS_00044103-exon-sc0004972-1510915933:4..561Clytia hemisphaericaexon
TCONS_00044103-exon-sc0004972-1491911889:2573..2643TCONS_00044103-exon-sc0004972-1491911889:2573..2643Clytia hemisphaericaexon
TCONS_00044103-exon-sc0004972-1491911889:1572..1751TCONS_00044103-exon-sc0004972-1491911889:1572..1751Clytia hemisphaericaexon
TCONS_00044103-exon-sc0004972-1491911889:944..1066TCONS_00044103-exon-sc0004972-1491911889:944..1066Clytia hemisphaericaexon
TCONS_00044103-exon-sc0004972-1491911889:4..561TCONS_00044103-exon-sc0004972-1491911889:4..561Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044103-proteinTCONS_00044103-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004972supercontigsc0004972:4..2643 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.021208	0	0.0315437	0.0590617	0.0752781	0	0.0497147	0	0	0.0847295	0.0756233	1.03063e-08	0	0.0503004	0	0	0	0	0	0.0255756	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044103 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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