|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044087 ID=TCONS_00044087|Name=TCONS_00044087|organism=Clytia hemisphaerica|type=transcript|length=326bp
agGAAATGTAAGAGAAGTCGTTCTCGATTTTGTTGATGGTGAATCAATCA
TCGACATGAAGGTTTCGCCAAACGAAAAGTTCATTGCAGTTTCTATTTCg
aatgaagatgaaaacatCTTGAAATGCGTGGTAGTGAAACCTTTAAAAAG
GAAAAGTTTAATCCTACAGCAACCTCCTCACATCTCATCTTAcggtaaaa
aacatttttctagcTAGAtagatattttacgtggatagccttGTAATCTA
GAAAGCTTTCCCATTCGAACAGAAGaataaaacattcgaatgaGTGGTGA
TTCAAACCGGCAGCCCCTGGTTTGAG Run BLAST on NCBI transcript from alignment at sc0004943:672..1755- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044087 ID=TCONS_00044087|Name=TCONS_00044087|organism=Clytia hemisphaerica|type=transcript|length=1084bp|location=Sequence derived from alignment at sc0004943:672..1755- (Clytia hemisphaerica)
AGGAAATGTAAGAGAAGTCGTTCTCGATTTTGTTGATGGTGAATCAATCA
TCGACATGAAGGTTTCGCCAAACGAAAAGGTTATAATTGTGTGATTTTAT
TTGTTACACAGACCTTTAGAAACGGTTTTCTTCAGATGTCATTTTGTCAT
GAAATTTTGCACACTCAACTGGGATGTAAAGCGGCAATGTTTTCCTGAAT
GTGACGGAGGCTGTTTTTGTTTAATTTGTTTCTTATTGCCCTTTTTAAGT
TCGTTTCTCTTTATTTTCTCTTGAGGTTTTGTTCATTAAAACCTTTCATT
ATGAGCATAGGGTAAATTTTTGTGAGCCTCAGTATGCTTGAAAATTTTTT
TTCGCTAGTCTCAAAATTAATGCTTATGTGAGCTTGCACGATTTGAGCCT
GGATATGCTTATGAGCGTTATGCTTATAAAAATGTAAAGCAATTTGTTTA
AGCTTTGTCTTCTTTTCTCTCGTTCTTTTTGACAGTTTTTATCGGATAAG
GGTGTATTAGATCAACCCTCGAGTGTGACGGAGCCCGATTTTCGAAATTT
TTCGAAAAATTGGATCATTAATTTTTTCTGATTTTTTTGCTTGAAAGTAG
GTACATCATTGGTAAAAGATGGCTGAAGCAGATTTTCACATTACGAAAAT
CTTTATCTATAAGAAACACTATTTATACATACATGTTCTTAGCCAAATTA
ATCAGTCTTTTGATGAGATAGATGTTCTCTCCCTTCCAACCCCCACTGCA
GTGGACACGGGGGGGCAATGAATGATAAAAACAAACAACAATATTTAAAC
ATCCTCCAAAATTTCTCCTTTTTTTCCGATTTTCTAGTTCATTGCAGTTT
CTATTTCGAATGAAGATGAAAACATCTTGAAATGCGTGGTAGTGAAACCT
TTAAAAAGGAAAAGTTTAATCCTACAGCAACCTCCTCACATCTCATCTTA
CGGTAAAAAACATTTTTCTAGCTAGATAGATATTTTACGTGGATAGCCTT
GTAATCTAGAAAGCTTTCCCATTCGAACAGAAGAATAAAACATTCGAATG
AGTGGTGATTCAAACCGGCAGCCCCTGGTTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044087-exon-sc0004943-1575043694:1677..1755 | TCONS_00044087-exon-sc0004943-1575043694:1677..1755 | Clytia hemisphaerica | exon |
| TCONS_00044087-exon-sc0004943-1575043694:672..918 | TCONS_00044087-exon-sc0004943-1575043694:672..918 | Clytia hemisphaerica | exon |
| TCONS_00044087-exon-sc0004943-1510915933:1677..1755 | TCONS_00044087-exon-sc0004943-1510915933:1677..1755 | Clytia hemisphaerica | exon |
| TCONS_00044087-exon-sc0004943-1510915933:672..918 | TCONS_00044087-exon-sc0004943-1510915933:672..918 | Clytia hemisphaerica | exon |
| TCONS_00044087-exon-sc0004943-1491911889:1677..1755 | TCONS_00044087-exon-sc0004943-1491911889:1677..1755 | Clytia hemisphaerica | exon |
| TCONS_00044087-exon-sc0004943-1491911889:672..918 | TCONS_00044087-exon-sc0004943-1491911889:672..918 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004943 | supercontig | sc0004943:672..1755 - |
Blast
The following BLAST results are available for this feature:
|
