TCONS_00044073 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044073
Unique NameTCONS_00044073
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length370

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044073 ID=TCONS_00044073|Name=TCONS_00044073|organism=Clytia hemisphaerica|type=transcript|length=370bp
CGTCTAACCTAgcttatttactttttttatactATTTAGATTTTTAGGAA
AAGTAATTTGTTCGCGGAATCAACTTTCGCAAATTTGCCCGGAATTCGCG
AAAATCACGTaagtttcttcccttaaagCAATCAGCTATTTCTGCTCCTC
GTTCATTCAACCCCAAAGAAGAGTAGTTTCAACCGATGACTTTAAATAGC
AGTTGAATGGCGGAGTGATTTTGCCCTTTTTTCGTGATGCCGCGGATAAA
GGACACAGCTGAGGGCGGGGAGGGGCGTGTGATCCATAAAGACAAATTAC
AATACCTGAGTATCTGGCGCTTGTTCGCTCATCGATGAATGAAACATTAC
GCACGAAACCAACAAATTCC
Run BLAST on NCBI

transcript from alignment at sc0004925:360..729

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044073 ID=TCONS_00044073|Name=TCONS_00044073|organism=Clytia hemisphaerica|type=transcript|length=370bp|location=Sequence derived from alignment at sc0004925:360..729 (Clytia hemisphaerica)
GGAATTTGTTGGTTTCGTGCGTAATGTTTCATTCATCGATGAGCGAACAA
GCGCCAGATACTCAGGTATTGTAATTTGTCTTTATGGATCACACGCCCCT
CCCCGCCCTCAGCTGTGTCCTTTATCCGCGGCATCACGAAAAAAGGGCAA
AATCACTCCGCCATTCAACTGCTATTTAAAGTCATCGGTTGAAACTACTC
TTCTTTGGGGTTGAATGAACGAGGAGCAGAAATAGCTGATTGctttaagg
gaagaaacttACGTGATTTTCGCGAATTCCGGGCAAATTTGCGAAAGTTG
ATTCCGCGAACAAATTACTTTTCCTAAAAATCTAAATagtataaaaaaag
taaataagcTAGGTTAGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027725XLOC_027725Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044073-exon-sc0004925-1491911889:360..729TCONS_00044073-exon-sc0004925-1491911889:360..729Clytia hemisphaericaexon
TCONS_00044073-exon-sc0004925-1510915933:360..729TCONS_00044073-exon-sc0004925-1510915933:360..729Clytia hemisphaericaexon
TCONS_00044073-exon-sc0004925-1575043694:360..729TCONS_00044073-exon-sc0004925-1575043694:360..729Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004925supercontigsc0004925:360..729 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.881435	1.07442	0.748504	0.976392	0.297166	0	0	0.265227	1.48554	0.23001	1.11626	0.293515	0.293107	0	0.375381	0.537121	0.165422	0.339105	0.468492	0	0	0.623525	1.01064	0.459407	0	0.21115	0.302155	0	0.978324	0.996757
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044073 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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