TCONS_00044068 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044068
Unique NameTCONS_00044068
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length809

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044068 ID=TCONS_00044068|Name=TCONS_00044068|organism=Clytia hemisphaerica|type=transcript|length=809bp
NTCACTCTCAGGTACCGAGGGAACAATTGTCCATCCTAACTATCCACAGA
ATTATAAAAACAACCGTAATTGTCAATACGCAATTACTGTCGCACCAAAC
AAACttattgaaatttcttttgagaTGATTGAACTTGAAGCCTCTGGAGG
TTGTTCATACGATTTCCTTGAGATTGTAGACGCTGTCTCAGGAAAACGAA
TCAAATTCTGTCAACCTGGAAAATCCTATTTATCCGGTGGTCGTAGCCTC
GTGTTGAAATTCTACACTGATGAAGCTGGAGTGAAAGCCGGTTTCTTGTT
AAAATGGCGGGCCGTCGATCCAGCTGCTTTGACGACAACGACCACCACAA
CAACCACGACGACCACTCCTACGACCACTCCGAATGCTATAAAGACCACT
CAAACGACAGTTACCCCTGGTGGCCAACGAGAATGTCGAAAAACATTGAA
GAGTTACAGTGGTTATGTGTTCCACACTAATTATCCAAACCAATACAAGA
ATTACGTCAATTGTATCTGGGTTATCGAGGCTCCTGCTGATAAACGAGTT
CAACTCGAtttcaaacatttcaaaatggAAATCTCGACCGGCTGCCGTAA
CGATTATTTACAAATATTTGACGGTTCCGACGATTCCGCGCCTCTGATTG
GCCGTTTTTGTGGTAATGAAATGCCGAAGAAAAAGTTTACGTCATCAGCT
AATTTCTTATCCATTGTCATGGTAACTAATGATAAGATTACAACACGTGG
TTTTATTGCGCAATATAAACAAGTGGACGCTGGAAGCATTACTGATCCAA
CAACTCCaa
Run BLAST on NCBI

protein sequence of TCONS_00044068-protein

>TCONS_00044068-protein ID=TCONS_00044068-protein|Name=TCONS_00044068-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp
SLSGTEGTIVHPNYPQNYKNNRNCQYAITVAPNKLIEISFEMIELEASGG
CSYDFLEIVDAVSGKRIKFCQPGKSYLSGGRSLVLKFYTDEAGVKAGFLL
KWRAVDPAALTTTTTTTTTTTTPTTTPNAIKTTQTTVTPGGQRECRKTLK
SYSGYVFHTNYPNQYKNYVNCIWVIEAPADKRVQLDFKHFKMEISTGCRN
DYLQIFDGSDDSAPLIGRFCGNEMPKKKFTSSANFLSIVMVTNDKITTRG
FIAQYKQVDAGSITDPTTP
Run BLAST on NCBI

transcript from alignment at sc0004916:226..2224-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044068 ID=TCONS_00044068|Name=TCONS_00044068|organism=Clytia hemisphaerica|type=transcript|length=1999bp|location=Sequence derived from alignment at sc0004916:226..2224- (Clytia hemisphaerica)
NTCACTCTCAGGTACCGAGGGAACAATTGTCCATCCTAACTATCCACAGA
ATTATAAAAACAACCGTAATTGTCAATACGCAATTACTGTCGCACCAAAC
AAACTTATTGAAATTTCTTTTGAGATGATTGAACTTGAAGCCTCTGGAGG
TTGTTCATACGATTTCCTTGAGGTACGTAATTAATAACCAATTGCCTGTT
TTCAAAATTTATACTTTTGGCTGGCTACAGTCACTGAGCTTTATATAAAC
CCTAGAGGCAGTTTCTCAATTCCCGGCCAAGCAAAATATTTTGCCCGCAT
CGAGAGCGTAGATCTATTTCGCTTGCACACAAGTGATGTAGCGCCGTTTG
TTCGTTAGGCCAAGTTTTAACACTATACTAGTAATGAATTTTTTGCGAGT
ACCACTTCCAAAAAAAACTCCCATCAAATATGGCGGATATATCTTGGTCC
AGGGTTTTAGTGGCTACAGTATTTTTAAATAAACCGTTTGAATAGGGCAA
ATATGAACTAACTCGGCTTTGGTTAGCATCTTTCAAAAAGTATCTAAAAA
TAAACGAACTATTTCGATTTCAGATTGTAGACGCTGTCTCAGGAAAACGA
ATCAAATTCTGTCAACCTGGAAAATCCTATTTATCCGGTGGTCGTAGCCT
CGTGTTGAAATTCTACACTGATGAAGCTGGAGTGAAAGCCGGTTTCTTGT
TAAAATGGCGGGCCGTCGATCCAGCTGCTTTGACGACAACGACCACCACA
ACAACCACGACGACCACTCCTACGACCACTCCGAATGCTATAAAGACCAC
TCAAACGACAGTTACCCCTGGTGGCCAACGAGGTAATCATCTGATTCATC
ATTATTTATTCAACATCCTGATTCCGTTGGTCTAAATAAAGTCAGCTAGG
AATGCTGTTCGGATTTTTTTAGTATTAATGAAAAAATCTAAAATATACGT
TTAAAGGTTTTAATTTTACACAAGTGTTCCCATTTTATATCAGACCAGAT
ACTATCTAATCATATTCTTATTGCGTTCGGCTCCACATTTAAGTCAATTC
AATATATTAATAAGTAAGGGAATAGAATCAACTTATTTGGTCGCTTTATT
AGCGACCGTAGTGCAGTGGTAGAGCATCCGGCTACGGTTCGCAAGGTTGT
GGGTTCAACCCCCAGCCGGGTCATACCAAAGATTCTCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGAAAGAGTGGCGCCCTC
CCCTACCTTCGGGTAGATAGCTATCGAAAGAGGAGCCTTCGGGTCGCCTC
CGACTGCGGTCGCAGACTTACTTACTATTTGAAATCAAAACCTCTTACCC
GAATAATGGTTGATAATTTTATTAATTGTTATGTTAATACTGATCTTGAT
TAATATAGTAATCTTACTAATTTTACATTTGTTCATTTTTACATTTTATG
GTAATACATTTTGTTTTTCAGAATGTCGAAAAACATTGAAGAGTTACAGT
GGTTATGTGTTCCACACTAATTATCCAAACCAATACAAGAATTACGTCAA
TTGTATCTGGGTTATCGAGGCTCCTGCTGATAAACGAGTTCAACTCGATT
TCAAACATTTCAAAATGGAAATCTCGACCGGCTGCCGTAACGATTATTTA
CAAATATTTGACGGTTCCGACGATTCCGCGCCTCTGATTGGCCGTTTTTG
TGGTAATGAAATGCCGAAGAAAAAGTTTACGTCATCAGCTAATTTCTTAT
CCATTGTCATGGTAACTAATGATAAGATTACAACACGTGGTTTTATTGCG
CAATATAAACAAGTGGACGCTGGAAGCATTACTGATCCAACAACTCCAA

Coding sequence (CDS) from alignment at sc0004916:226..2224-

>TCONS_00044068 ID=TCONS_00044068|Name=TCONS_00044068|organism=Clytia hemisphaerica|type=CDS|length=2421bp|location=Sequence derived from alignment at sc0004916:226..2224- (Clytia hemisphaerica)
AATGTCGAAAAACATTGAAGAGTTACAGTGGTTATGTGTTCCACACTAAT
TATCCAAACCAATACAAGAATTACGTCAATTGTATCTGGGTTATCGAGGC
TCCTGCTGATAAACGAGTTCAACTCGATTTCAAACATTTCAAAATGGAAA
TCTCGACCGGCTGCCGTAACGATTATTTACAAATATTTGACGGTTCCGAC
GATTCCGCGCCTCTGATTGGCCGTTTTTGTGGTAATGAAATGCCGAAGAA
AAAGTTTACGTCATCAGCTAATTTCTTATCCATTGTCATGGTAACTAATG
ATAAGATTACAACACGTGGTTTTATTGCGCAATATAAACAAGTGGACGCT
GGAAGCATTACTGATCCAACAACTCCAATTGTAGACGCTGTCTCAGGAAA
ACGAATCAAATTCTGTCAACCTGGAAAATCCTATTTATCCGGTGGTCGTA
GCCTCGTGTTGAAATTCTACACTGATGAAGCTGGAGTGAAAGCCGGTTTC
TTGTTAAAATGGCGGGCCGTCGATCCAGCTGCTTTGACGACAACGACCAC
CACAACAACCACGACGACCACTCCTACGACCACTCCGAATGCTATAAAGA
CCACTCAAACGACAGTTACCCCTGGTGGCCAACGAGTCACTCTCAGGTAC
CGAGGGAACAATTGTCCATCCTAACTATCCACAGAATTATAAAAACAACC
GTAATTGTCAATACGCAATTACTGTCGCACCAAACAAACTTATTGAAATT
TCTTTTGAGATGATTGAACTTGAAGCCTCTGGAGGTTGTTCATACGATTT
CCTTGAGAATGTCGAAAAACATTGAAGAGTTACAGTGGTTATGTGTTCCA
CACTAATTATCCAAACCAATACAAGAATTACGTCAATTGTATCTGGGTTA
TCGAGGCTCCTGCTGATAAACGAGTTCAACTCGATTTCAAACATTTCAAA
ATGGAAATCTCGACCGGCTGCCGTAACGATTATTTACAAATATTTGACGG
TTCCGACGATTCCGCGCCTCTGATTGGCCGTTTTTGTGGTAATGAAATGC
CGAAGAAAAAGTTTACGTCATCAGCTAATTTCTTATCCATTGTCATGGTA
ACTAATGATAAGATTACAACACGTGGTTTTATTGCGCAATATAAACAAGT
GGACGCTGGAAGCATTACTGATCCAACAACTCCAATTGTAGACGCTGTCT
CAGGAAAACGAATCAAATTCTGTCAACCTGGAAAATCCTATTTATCCGGT
GGTCGTAGCCTCGTGTTGAAATTCTACACTGATGAAGCTGGAGTGAAAGC
CGGTTTCTTGTTAAAATGGCGGGCCGTCGATCCAGCTGCTTTGACGACAA
CGACCACCACAACAACCACGACGACCACTCCTACGACCACTCCGAATGCT
ATAAAGACCACTCAAACGACAGTTACCCCTGGTGGCCAACGAGTCACTCT
CAGGTACCGAGGGAACAATTGTCCATCCTAACTATCCACAGAATTATAAA
AACAACCGTAATTGTCAATACGCAATTACTGTCGCACCAAACAAACTTAT
TGAAATTTCTTTTGAGATGATTGAACTTGAAGCCTCTGGAGGTTGTTCAT
ACGATTTCCTTGAGAATGTCGAAAAACATTGAAGAGTTACAGTGGTTATG
TGTTCCACACTAATTATCCAAACCAATACAAGAATTACGTCAATTGTATC
TGGGTTATCGAGGCTCCTGCTGATAAACGAGTTCAACTCGATTTCAAACA
TTTCAAAATGGAAATCTCGACCGGCTGCCGTAACGATTATTTACAAATAT
TTGACGGTTCCGACGATTCCGCGCCTCTGATTGGCCGTTTTTGTGGTAAT
GAAATGCCGAAGAAAAAGTTTACGTCATCAGCTAATTTCTTATCCATTGT
CATGGTAACTAATGATAAGATTACAACACGTGGTTTTATTGCGCAATATA
AACAAGTGGACGCTGGAAGCATTACTGATCCAACAACTCCAATTGTAGAC
GCTGTCTCAGGAAAACGAATCAAATTCTGTCAACCTGGAAAATCCTATTT
ATCCGGTGGTCGTAGCCTCGTGTTGAAATTCTACACTGATGAAGCTGGAG
TGAAAGCCGGTTTCTTGTTAAAATGGCGGGCCGTCGATCCAGCTGCTTTG
ACGACAACGACCACCACAACAACCACGACGACCACTCCTACGACCACTCC
GAATGCTATAAAGACCACTCAAACGACAGTTACCCCTGGTGGCCAACGAG
TCACTCTCAGGTACCGAGGGAACAATTGTCCATCCTAACTATCCACAGAA
TTATAAAAACAACCGTAATTGTCAATACGCAATTACTGTCGCACCAAACA
AACTTATTGAAATTTCTTTTGAGATGATTGAACTTGAAGCCTCTGGAGGT
TGTTCATACGATTTCCTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027720XLOC_027720Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044068-proteinTCONS_00044068-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044068-exon-sc0004916-1575043694:2053..2224TCONS_00044068-exon-sc0004916-1575043694:2053..2224Clytia hemisphaericaexon
TCONS_00044068-exon-sc0004916-1575043694:1393..1651TCONS_00044068-exon-sc0004916-1575043694:1393..1651Clytia hemisphaericaexon
TCONS_00044068-exon-sc0004916-1575043694:226..603TCONS_00044068-exon-sc0004916-1575043694:226..603Clytia hemisphaericaexon
TCONS_00044068-exon-sc0004916-1510915933:2053..2224TCONS_00044068-exon-sc0004916-1510915933:2053..2224Clytia hemisphaericaexon
TCONS_00044068-exon-sc0004916-1510915933:1393..1651TCONS_00044068-exon-sc0004916-1510915933:1393..1651Clytia hemisphaericaexon
TCONS_00044068-exon-sc0004916-1510915933:226..603TCONS_00044068-exon-sc0004916-1510915933:226..603Clytia hemisphaericaexon
TCONS_00044068-exon-sc0004916-1491911889:2053..2224TCONS_00044068-exon-sc0004916-1491911889:2053..2224Clytia hemisphaericaexon
TCONS_00044068-exon-sc0004916-1491911889:1393..1651TCONS_00044068-exon-sc0004916-1491911889:1393..1651Clytia hemisphaericaexon
TCONS_00044068-exon-sc0004916-1491911889:226..603TCONS_00044068-exon-sc0004916-1491911889:226..603Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004916supercontigsc0004916:226..2224 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.100792	0.167881	0	0	0.241107	0.181768	2.00629	1.95251	0.951491	0.801614	1.64945	1.50466	1.74665	3.24089	0.88883	1.00722	1.44885	2.53618	1.9882	2.57394	4.87989	3.00693	1.21459	1.26108	2.79904	3.7487	1.58326	0.998929	0.5235	0.546782
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000859CUB_dom
Blast
[Close]
BLAST of TCONS_00044068 vs. Swiss-Prot (Human)
Match: TLL1 (Tolloid-like protein 1 OS=Homo sapiens GN=TLL1 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.513e-27
Identity = 71/278 (25.54%), Postives = 126/278 (45.32%), Query Frame = 2 
Query:    5 LSGTEGTIVHPNYPQNYKNNRNCQYAITVAPNKLIEISFEMIELEASGGCSYDFLEIVDAVSGK---RIKFC--QPGKSYLSGGRSLVLKFYTDEAGVKAGFLLKWRAVDPAALXXXXXXXXXXXXXXXXXXXXXXXXXXVTPGGQR-----ECRKTLKSYSGYVFHTNYPNQYKNYVNCIWVIEAPADKRVQLDFKHFKMEISTGCRNDYLQIFDGSDDSAPLIGRFCGNEMPKKKFTSSANFLSIVMVTNDKITTRGFIAQYKQVDAGSITDPTTP 808
            L+   GTI  P +P+ Y  N+NC + +       I + FE  ELE +  C YD++EI   +S +     KFC  +  +   S   ++ ++F +D    K GF   + + D    +            T      +     V    +      EC + + S SG +   N+P++Y +   C W I A    R++L F  F++E    C  D+L++FDG  + +P++GR CGN++P     ++ N + +  V++  +  +GF A +     G +   + P
Sbjct:  622 LTKLNGTITTPGWPKEYPPNKNCVWQVVAPTQYRISVKFEFFELEGNEVCKYDYVEIWSGLSSESKLHGKFCGAEVPEVITSQFNNMRIEFKSDNTVSKKGFKAHFFS-DKDECSKDNGGCQHECVNTMGSYMCQCRNGFVLHDNKHDCKEAECEQKIHSPSGLITSPNWPDKYPSRKECTWEISATPGHRIKLAFSEFEIEQHQECAYDHLEVFDGETEKSPILGRLCGNKIP-DPLVATGNKMFVRFVSDASVQRKGFQATHSTECGGRLKAESKP 897

HSP 2 Score: 96.2857 bits (238), Expect = 7.314e-22
Identity = 62/260 (23.85%), Postives = 112/260 (43.08%), Query Frame = 2 
Query:    2 SLSGTEGTIVHPNYPQNYKNNRNCQYAITVAPNKLIEISFEMIELEASGGCSYDFLEIVDAVSGKRI---KFC--QPGKSYLSGGRSLVLKFYTDEAGVKAGFLLKWRAVDPAALXXXXXXXXXXXXXXXXXXXXXXXXXXVTPGGQRECRKTLKSYSGYVFHTNYPNQYKNYVNCIWVIEAPADKRVQLDFKHFKMEISTGCRNDYLQIFDGSDDSAPLIGRFCGNEMPKKKFTSSANFLSIVMVTNDKITTRGFIAQY 766
            +L  + G +  P +P  Y +  +C + ++V P + I ++F  ++L  S  C YD++E+ D    K     +FC  +  +   S    + ++F +    V  GF   + A+                                       C   ++   G +   NYP+ Y+    C+W I       V L F+ F++E    C  DYL++ DG+ +++PLIGRFCG + P +   S++N L +  V++  +   GF A +
Sbjct:  352 TLQESNGNLSSPGFPNGYPSYTHCIWRVSVTPGEKIVLNFTTMDLYKSSLCWYDYIEVRDGYWRKSPLLGRFCGDKLPEVLTSTDSRMWIEFRSSSNWVGKGFAAVYEAI---------------------------------------CGGEIRKNEGQIQSPNYPDDYRPMKECVWKITVSESYHVGLTFQSFEIERHDNCAYDYLEVRDGTSENSPLIGRFCGYDKP-EDIRSTSNTLWMKFVSDGTVNKAGFAANF 571
The following BLAST results are available for this feature:
BLAST of TCONS_00044068 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TLL16.513e-2725.54Tolloid-like protein 1 OS=Homo sapiens GN=TLL1 PE=... [more]
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