TCONS_00044062 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044062
Unique NameTCONS_00044062
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length308

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044062 ID=TCONS_00044062|Name=TCONS_00044062|organism=Clytia hemisphaerica|type=transcript|length=308bp
AAAGCTGGTACAtttaatttcattatttcaCGAACCACTTTTTTAATTAT
AATGGGAATTGTTTAACGTGTGATACATTCTATTCCGAGCACCTCATTGG
atgaattttaaatcaagtgaaTAGTAAATTGCTCTTATTATAAAGCCTCA
GTATAAAAAGAGACGAACGTATGACTTGATAATCAAACGAAAAGcaaatt
tcaaacaaagaaGTATACAGTGCAATAGTGAAATTGTGGACAACAGTAAG
TACAAATTTATTAATTAATCAGATTTTTGAAAGTACTGACTTTTCCAAAG
TTTTCTCA
Run BLAST on NCBI

transcript from alignment at sc0004903:4678..4985

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044062 ID=TCONS_00044062|Name=TCONS_00044062|organism=Clytia hemisphaerica|type=transcript|length=308bp|location=Sequence derived from alignment at sc0004903:4678..4985 (Clytia hemisphaerica)
TGAGAAAACTTTGGAAAAGTCAGTACTTTCAAAAATCTGATTAATTAATA
AATTTGTACTTACTGTTGTCCACAATTTCACTATTGCACTGTATACttct
ttgtttgaaatttgCTTTTCGTTTGATTATCAAGTCATACGTTCGTCTCT
TTTTATACTGAGGCTTTATAATAAGAGCAATTTACTAttcacttgattta
aaattcatCCAATGAGGTGCTCGGAATAGAATGTATCACACGTTAAACAA
TTCCCATTATAATTAAAAAAGTGGTTCGtgaaataatgaaattaaaTGTA
CCAGCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027714XLOC_027714Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044062-exon-sc0004903-1491911889:4678..4985TCONS_00044062-exon-sc0004903-1491911889:4678..4985Clytia hemisphaericaexon
TCONS_00044062-exon-sc0004903-1510915933:4678..4985TCONS_00044062-exon-sc0004903-1510915933:4678..4985Clytia hemisphaericaexon
TCONS_00044062-exon-sc0004903-1575043694:4678..4985TCONS_00044062-exon-sc0004903-1575043694:4678..4985Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004903supercontigsc0004903:4678..4985 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.58573	5.97342	3.67135	2.81693	0	0.528931	1.38143	0.862184	1.02987	2.2431	0	1.23681	0	0	0.203377	0	0.806792	0.275585	0	0	2.07791	0.506729	1.24554	1.50634	0	0	0	0	0.397534	0.810048
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044062 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top