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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044059 ID=TCONS_00044059|Name=TCONS_00044059|organism=Clytia hemisphaerica|type=transcript|length=1441bp
AAAAGATTCATGAAAGGTGTATTTGAAACTAAGCCATCTTTCCCCAAATA
TACAGTCGTTTGGGATGTAAACAAAGTCTTTGATTTCTTCAGATCCCTTG
AGATCACTGCCAACTTGCCACTGAAAATGCTAACTCTAAAACTATGTATG
ATTTTAATGTTGATATAAGGGGGTCAAAGGTCACAAACCATACATTGCAT
TGCAAGAGCTGATGTCAAATTTATTGACGAAACGTCAGTTTACATTCCTA
TTATGgaaaaactgaagcaaacaaaagCCACAAACCATGTGGAACCCTTA
gaattcaaaatgttttctGAACATAAGTTGTGTGCAGTGATACACTTAAA
AGAATACATTAATAGAGTTGAAACCTTAGCACCAAATGCAAAACAGCTGT
TCGTTAGCTTTGCAAAACCGCATAAACCTGTATCTAAAGACACAATTTCA
CGCTGGTGTAAGGAGGTGCTAAGGTTGTCCGGCATTGATATTTCTAAATA
TACGACCCATTCTTCTAGATCGGCAGCTACATCTAAAGCATCCAAAAAGG
GGATACCTCTAAAAACGATTATCAACAAAGCTGGTTGGAAAAATGAACGT
ATGTTTGCAACCACTTATCAAAGGACAATTGAATGCGACTTTGACATTGT
CACTTGAAAAAATGAACATTATTTCATAGTTGACTATAATATTACTTTGA
GTTATGTATatgaaattttgggcaaatctgGCGTATTAGAAGCCATTTAC
GTACTAACTAAATGAGATGCGAATTTGATTCAGTTTGAATGTTCTTTATT
TATTGATTATCTGCTgagaattttttctaaagttcATGACACTAGTTGTG
TTTTTTGATAGTATGATAATACTATTTTTACCTACCTTGATGTAAGTtgc
attatatatttttaattcaCAGAAATAATTTTCTAATTGCACCAAAAAAG
GTGTTACATGATATCTATTTCGTTAAAACCTACCTCTCGCATTGGCTTAC
AGAAAAACTTGCGAAATCTTCGCTATACTCTCGAAGAGTCTGGAAACTAG
AATGACGTAAAATTGAACAAATAAATGAGACTTACCTAAGTTGATATTTA
TTTGTGATTTTATGATTTCNNNNNNNNNNNNNNNCTATACTCTCGAAGAG
TCTGGAAACTAGAATGACGTAAAATTGAACAAATAAATGAGACTTACCTA
AGTTGATATTTATTTGTGATTTTATGATTTCTAGTTTCCAGTAACGATGA
GAGAGATTATAGCGCCCACCCAGGTGCTTTACCCTCCCAGGTATCTCTCT
CATCGTTATTTCTGTAAACTGATTACTTGCCAATACTGACTGTTCCGCTC
CGCGTTCTCTTCGCTATAATCTCTCTCATCGTTACTGGAAACTAGAAATC
ATAAAATCACAAATAAATATCAACTTAGGTAAGTCTCATTT Run BLAST on NCBI protein sequence of TCONS_00044059-protein >TCONS_00044059-protein ID=TCONS_00044059-protein|Name=TCONS_00044059-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
MEKLKQTKATNHVEPLEFKMFSEHKLCAVIHLKEYINRVETLAPNAKQLF
VSFAKPHKPVSKDTISRWCKEVLRLSGIDISKYTTHSSRSAATSKASKKG
IPLKTIINKAGWKNERMFATTYQRTIECDFDIVT Run BLAST on NCBI transcript from alignment at sc0004897:1..1441 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044059 ID=TCONS_00044059|Name=TCONS_00044059|organism=Clytia hemisphaerica|type=transcript|length=1441bp|location=Sequence derived from alignment at sc0004897:1..1441 (Clytia hemisphaerica)
AAATGAGACTTACCTAAGTTGATATTTATTTGTGATTTTATGATTTCTAG
TTTCCAGTAACGATGAGAGAGATTATAGCGAAGAGAACGCGGAGCGGAAC
AGTCAGTATTGGCAAGTAATCAGTTTACAGAAATAACGATGAGAGAGATA
CCTGGGAGGGTAAAGCACCTGGGTGGGCGCTATAATCTCTCTCATCGTTA
CTGGAAACTAGAAATCATAAAATCACAAATAAATATCAACTTAGGTAAGT
CTCATTTATTTGTTCAATTTTACGTCATTCTAGTTTCCAGACTCTTCGAG
AGTATAGNNNNNNNNNNNNNNNGAAATCATAAAATCACAAATAAATATCA
ACTTAGGTAAGTCTCATTTATTTGTTCAATTTTACGTCATTCTAGTTTCC
AGACTCTTCGAGAGTATAGCGAAGATTTCGCAAGTTTTTCTGTAAGCCAA
TGCGAGAGGTAGGTTTTAACGAAATAGATATCATGTAACACCTTTTTTGG
TGCAATTAGAAAATTATTTCTGtgaattaaaaatatataatgcaACTTAC
ATCAAGGTAGGTAAAAATAGTATTATCATACTATCAAAAAACACAACTAG
TGTCATgaactttagaaaaaattctcAGCAGATAATCAATAAATAAAGAA
CATTCAAACTGAATCAAATTCGCATCTCATTTAGTTAGTACGTAAATGGC
TTCTAATACGCcagatttgcccaaaatttcatATACATAACTCAAAGTAA
TATTATAGTCAACTATGAAATAATGTTCATTTTTTCAAGTGACAATGTCA
AAGTCGCATTCAATTGTCCTTTGATAAGTGGTTGCAAACATACGTTCATT
TTTCCAACCAGCTTTGTTGATAATCGTTTTTAGAGGTATCCCCTTTTTGG
ATGCTTTAGATGTAGCTGCCGATCTAGAAGAATGGGTCGTATATTTAGAA
ATATCAATGCCGGACAACCTTAGCACCTCCTTACACCAGCGTGAAATTGT
GTCTTTAGATACAGGTTTATGCGGTTTTGCAAAGCTAACGAACAGCTGTT
TTGCATTTGGTGCTAAGGTTTCAACTCTATTAATGTATTCTTTTAAGTGT
ATCACTGCACACAACTTATGTTCagaaaacattttgaattcTAAGGGTTC
CACATGGTTTGTGGcttttgtttgcttcagtttttcCATAATAGGAATGT
AAACTGACGTTTCGTCAATAAATTTGACATCAGCTCTTGCAATGCAATGT
ATGGTTTGTGACCTTTGACCCCCTTATATCAACATTAAAATCATACATAG
TTTTAGAGTTAGCATTTTCAGTGGCAAGTTGGCAGTGATCTCAAGGGATC
TGAAGAAATCAAAGACTTTGTTTACATCCCAAACGACTGTATATTTGGGG
AAAGATGGCTTAGTTTCAAATACACCTTTCATGAATCTTTT Coding sequence (CDS) from alignment at sc0004897:1..1441 >TCONS_00044059 ID=TCONS_00044059|Name=TCONS_00044059|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at sc0004897:1..1441 (Clytia hemisphaerica)
TCAAGTGACAATGTCAAAGTCGCATTCAATTGTCCTTTGATAAGTGGTTG
CAAACATACGTTCATTTTTCCAACCAGCTTTGTTGATAATCGTTTTTAGA
GGTATCCCCTTTTTGGATGCTTTAGATGTAGCTGCCGATCTAGAAGAATG
GGTCGTATATTTAGAAATATCAATGCCGGACAACCTTAGCACCTCCTTAC
ACCAGCGTGAAATTGTGTCTTTAGATACAGGTTTATGCGGTTTTGCAAAG
CTAACGAACAGCTGTTTTGCATTTGGTGCTAAGGTTTCAACTCTATTAAT
GTATTCTTTTAAGTGTATCACTGCACACAACTTATGTTCagaaaacattt
tgaattcTAAGGGTTCCACATGGTTTGTGGcttttgtttgcttcagtttt
tcCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044059-exon-sc0004897-1491911889:1..1441 | TCONS_00044059-exon-sc0004897-1491911889:1..1441 | Clytia hemisphaerica | exon |
| TCONS_00044059-exon-sc0004897-1510915933:1..1441 | TCONS_00044059-exon-sc0004897-1510915933:1..1441 | Clytia hemisphaerica | exon |
| TCONS_00044059-exon-sc0004897-1575043694:1..1441 | TCONS_00044059-exon-sc0004897-1575043694:1..1441 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004897 | supercontig | sc0004897:1..1441 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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