TCONS_00044044 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044044
Unique NameTCONS_00044044
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length837

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044044 ID=TCONS_00044044|Name=TCONS_00044044|organism=Clytia hemisphaerica|type=transcript|length=837bp
CAGAAGTGCATATGAGTAATCATAATATAAACTCAtcgtaaaaaaaacat
taacaGATAATGGCTGCAAATCCGATATCGGCAGACACTCCTCAAGTTCA
ACAAGCCAAGAAAGAAATTCTTCTCATATTTGATTTTGATAACACAATCA
TTGACAAAAATACAGACTCAGAAATTATTAAAGCACAAAATTTATATGGA
AAATGTTTGTCAGGGAAGAGGTATTTAAAAAACGACCTTGGTTGGGCTGA
AACAATGTCCCTGGCGCTGGCTGATCTTCACCAAAATAACATCTCTCAAA
AGGACATTGATAAAATTATCGAAGATATACCATTGACTCctggttttgaa
aaagtttttgaatttttacgtCAGAATCAAGAGAAATGTGAATGCATAAT
GCTCTCGCATTCGAACAGTTATTTCATAGATTTATTGGTGAAGAAATATT
CAATCGgtgattgttttgattctaTACACACTTACGAAGCAGAATGGATG
AAGGATGGACCTCTTCTGGTCAAACCTTATCACCCATTCCTTGTCAATTG
TCAAATCTGTCCACCAGATTTCTGTAAAGGTACAAAAATGTTGTTATTCC
TAAATTTTTTAACAGTCTATTCTTAAAAGACCTTTTAATAAATTGAGTTA
TGAACAACGCtcacctcgttttcaaaatattactatGCTAATCGACTCCT
AGGGGTAATTCATAAAACGTTTACTCATGAACAtaataaacgactggaca
tccatctcctttgtctttttgaagataacacggctagcttcgttgccgcc
tcgttaaaggcataaaatgaaacaatagattttgatg
Run BLAST on NCBI

transcript from alignment at sc0004878:1023..2379-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044044 ID=TCONS_00044044|Name=TCONS_00044044|organism=Clytia hemisphaerica|type=transcript|length=1357bp|location=Sequence derived from alignment at sc0004878:1023..2379- (Clytia hemisphaerica)
CAGAAGTGCATATGAGTAATCATAATATAAACTCATCGTAAAAAAAACAT
TAACAGATAATGGCTGCAAATCCGATATCGGCAGACACTCCTCAAGTTCA
ACAAGCCAAGAAAGAAATTCTTCTCATATTTGATTTTGATAACACAATCA
TTGACAAAAATACAGACTCAGAAATTATTAAAGCACAAAATTTATATGGA
AAATGTTTGTCAGGGAAGAGGTATTTAAAAAACGACCTTGGTTGGGCTGA
AACAATGTCCCTGGCGCTGGCTGATCTTCACCAAAATAACATCTCTCAAA
AGGACATTGATAAAATTATCGAAGATATACCATTGACTCCTGGTTTTGAA
AAAGTTTTTGAATTTTTACGTCAGAATCAAGAGAAATGTGAATGCATAAT
GCTCTCGCATTCGAACAGGTGAGTCATCTTGTTGTAAATTCACTTTGCAG
GATTATTCCGTCTATTAATTTTGAACTTAAAACTTTAGTTTGCAATAAAG
CGAAAGTTAATGAAACCTCTTAAATGCCAATTTTAATGGTTTGGTTCCAG
GATAGAAAACATATTCAAAAATGAAAGGAACTGTAAATCATGATTGAAGC
CAATCCCTCAATAAATATGTTGAGACACTGCTACCCATAGCTGACACACA
ACGTTGTTTCGACGTTCATCTAACGTTATATGGACGTTGTGAACGTTAAA
TAAACGTTGAAACAACGTTGTGTGTCAGTTCAGTAGCCAATTCATTACGA
ACAAGTCGCCATTTGCAATGTTGCGGTGCCTTTTGGCGGCCAAAGAGTCT
TAATGACAATAGGGTAAAGTCTCGTGCATTCATTGGGAGATTGGAGCTTT
TGTCGATTTTGATTTCTCTTGGCTAAATAACATATAAGAAAAGATAAAAT
CTTTGCTCAAACATTGTGTTCCCACTTTTCCATTTCAGTTATTTCATAGA
TTTATTGGTGAAGAAATATTCAATCGGTGATTGTTTTGATTCTATACACA
CTTACGAAGCAGAATGGATGAAGGATGGACCTCTTCTGGTCAAACCTTAT
CACCCATTCCTTGTCAATTGTCAAATCTGTCCACCAGATTTCTGTAAAGG
TACAAAAATGTTGTTATTCCTAAATTTTTTAACAGTCTATTCTTAAAAGA
CCTTTTAATAAATTGAGTTATGAACAACGCTCACCTCGTTTTCAAAATAT
TACTATGCTAATCGACTCCTAGGGGTAATTCATAAAACGTTTACTCATGA
ACATAATAAACGACTGGACATCCATCTCCTTTGTCTTTTTGAAGATAACA
CGGCTAGCTTCGTTGCCGCCTCGTTAAAGGCATAAAATGAAACAATAGAT
TTTGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027697XLOC_027697Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044044-exon-sc0004878-1575043694:1962..2379TCONS_00044044-exon-sc0004878-1575043694:1962..2379Clytia hemisphaericaexon
TCONS_00044044-exon-sc0004878-1575043694:1023..1441TCONS_00044044-exon-sc0004878-1575043694:1023..1441Clytia hemisphaericaexon
TCONS_00044044-exon-sc0004878-1510915933:1962..2379TCONS_00044044-exon-sc0004878-1510915933:1962..2379Clytia hemisphaericaexon
TCONS_00044044-exon-sc0004878-1510915933:1023..1441TCONS_00044044-exon-sc0004878-1510915933:1023..1441Clytia hemisphaericaexon
TCONS_00044044-exon-sc0004878-1491911889:1962..2379TCONS_00044044-exon-sc0004878-1491911889:1962..2379Clytia hemisphaericaexon
TCONS_00044044-exon-sc0004878-1491911889:1023..1441TCONS_00044044-exon-sc0004878-1491911889:1023..1441Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004878supercontigsc0004878:1023..2379 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.14525	2.27092	0.660046	0.860529	0.787157	1.04858	1.07868	0.992877	6.51684	3.22389	11.7233	5.36731	3.93151	2.34612	1.02429	5.50066	1.32348	0.66689	1.93321	4.99249	1.66275	1.47949	2.93085	2.39299	2.0995	2.40911	1.40363	1.1526	1.73075	1.47208
Blast
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BLAST of TCONS_00044044 vs. Swiss-Prot (Human)
Match: PHOP2 (Pyridoxal phosphate phosphatase PHOSPHO2 OS=Homo sapiens GN=PHOSPHO2 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.801e-26
Identity = 58/165 (35.15%), Postives = 93/165 (56.36%), Query Frame = 3 
Query:  114 EILLIFDFDNTIIDKNTDSEIIK-AQNLYGKCLSGKRYLKNDLGWAETMSLALADLHQNNISQKDIDKIIEDIPLTPGFEKVFEFLRQNQEKCECIMLSHSNSYFIDLLVKKYSIGDCFDSIHTYEAEWMKDGPLLVKPYHPFLVNCQICPPDFCKGTKMLLFLN 605
            +ILL+FDFDNTIID N+D+ I++ A N          Y K    W E M      L    + + ++ + +  +P TPG  ++F F+R+N++K +CI++S SNS FID +++  S  D FD + T  A +  +G L V+ YH    +C  CP + CK   ++ F++
Sbjct:    2 KILLVFDFDNTIIDDNSDTWIVQCAPNKKLPIELRDSYRKG--FWTEFMGRVFKYLGDKGVREHEMKRAVTSLPFTPGMVELFNFIRKNKDKFDCIIISDSNSVFIDWVLEAASFHDIFDKVFTNPAAFNSNGHLTVENYHTH--SCNRCPKNLCKKVVLIEFVD 162
The following BLAST results are available for this feature:
BLAST of TCONS_00044044 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PHOP23.801e-2635.15Pyridoxal phosphate phosphatase PHOSPHO2 OS=Homo s... [more]
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