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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044042 ID=TCONS_00044042|Name=TCONS_00044042|organism=Clytia hemisphaerica|type=transcript|length=1365bp
ATTTTGGTCGATGCATTAGCCGTGGCACATGGACAACGAGCCATGTTTCG
AACCACGCTTGAAATATCTCTTGATTCAACCTGATGAATTTATCAGGTTT
TGTGCTAACATCAACAGGAAAGGTTGGACTTCTCTCGTTATTTCTGCCCA
GTAGCAGACGATTTGGTGTTAAGACATCAGATATCTCGTAATCAGTCTGT
CCAGCAAGAGCAAGTGGCATGTCATTGATTGTATTTCCAACTTGTGCTGC
AACAGTTTCCCATTGCATTAAGGAAAGCTTATGGTTGTGGAAATTCATCT
CGAttgatttctttatttcttgaatCTTCCTTTCTACCTTTCCGTGCATG
AAATGACCTGAAACTGGACATACTTCAAATTCGATCATTGTGTCGCGATG
AAGTTGGTTTTGAAGATCCTTAAAGTTGAGTCGGAGAGAATCACATCCTT
TGACTAATTGACTGCCTTCATCTGGCAACAAATACTTGGGATAGCCAACG
TTGCTTGAAAATCTGATAACCGATAGGATGAATGATGGTGTACTGTAGTC
ATCCATAATATGTATTTTTGTTGCTGATGTTGTTGTACAACAAAAAACCA
CCAACCAAACCTTTATACTCTTTCGCttattgaaacttgaaaatgcACTG
AATGGACCACATAGATCCACTTGAGTTGAATAAAATGGTGGTGCAATATT
GAGACTGTGCTGGGATACTGGACCCATTTCAACNTCactgaaaatactga
aaaatgcACTTAAAAGAAACCAGAATAGACACAAAAACAAATGGAAGAGA
CTCAAGATAAAATGAGATCAAACTTGAGATATTGGTAAATTTTGCAGTTC
ATTAAGTTCAACATTGGTCAAATTACACTGCCCAAAGACACGATGCAAAA
TTTATTCATTAATACAACCAGCAAATGCCAATTCTTCACTTATACTCAAT
TCATCATACGGGTGAATCATGATCAAGCCANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGATGCAAAATTTATTCATTAATA
CAACCAGCAAATGCCAATTCTTCACTTATACTCAATTCATCATACGGGTG
AATCATGATCAAGCCACGAGTTGCACGAAACGTTTCACGATCAACATTTT
CGCTATGATTTCGATACTTCACCAATACCTTTCGAATCTTTCCATCTGTA
CTTTTATCGACACTTTTCACCATTCCATATTGGTATGTGCTTGAGAGTGC
ATTCTCACGCTTTGCAAATAGGACAATGTCTCCGGTTTTGATGTCGTATT
CGTTCTTGAACCATTTTGGTCGATGCATTAGCCGTGGCACATGGACAACG
AGCCATGTTTCGAAC Run BLAST on NCBI protein sequence of TCONS_00044042-protein >TCONS_00044042-protein ID=TCONS_00044042-protein|Name=TCONS_00044042-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
MGPVSQHSLNIAPPFYSTQVDLCGPFSAFSSFNKRKSIKVWLVVFCCTTT
SATKIHIMDDYSTPSFILSVIRFSSNVGYPKYLLPDEGSQLVKGCDSLRL
NFKDLQNQLHRDTMIEFEVCPVSGHFMHGKVERKIQEIKKSIEMNFHNHK
LSLMQWETVAAQVGNTINDMPLALAGQTDYEISDVLTPNRLLLGRNNERS
PTFPVDVSTKPDKFIRLNQEIFQAWFETWLVVHVPRLMHRPK Run BLAST on NCBI transcript from alignment at sc0004874:2..1366 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044042 ID=TCONS_00044042|Name=TCONS_00044042|organism=Clytia hemisphaerica|type=transcript|length=1365bp|location=Sequence derived from alignment at sc0004874:2..1366 (Clytia hemisphaerica)
GTTCGAAACATGGCTCGTTGTCCATGTGCCACGGCTAATGCATCGACCAA
AATGGTTCAAGAACGAATACGACATCAAAACCGGAGACATTGTCCTATTT
GCAAAGCGTGAGAATGCACTCTCAAGCACATACCAATATGGAATGGTGAA
AAGTGTCGATAAAAGTACAGATGGAAAGATTCGAAAGGTATTGGTGAAGT
ATCGAAATCATAGCGAAAATGTTGATCGTGAAACGTTTCGTGCAACTCGT
GGCTTGATCATGATTCACCCGTATGATGAATTGAGTATAAGTGAAGAATT
GGCATTTGCTGGTTGTATTAATGAATAAATTTTGCATCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGCTTGATCATGAT
TCACCCGTATGATGAATTGAGTATAAGTGAAGAATTGGCATTTGCTGGTT
GTATTAATGAATAAATTTTGCATCGTGTCTTTGGGCAGTGTAATTTGACC
AATGTTGAACTTAATGAACTGCAAAATTTACCAATATCTCAAGTTTGATC
TCATTTTATCTTGAGTCTCTTCCATTTGTTTTTGTGTCTATTCTGGTTTC
TTTTAAGTgcatttttcagtattttcagtGANGTTGAAATGGGTCCAGTA
TCCCAGCACAGTCTCAATATTGCACCACCATTTTATTCAACTCAAGTGGA
TCTATGTGGTCCATTCAGTgcattttcaagtttcaataaGCGAAAGAGTA
TAAAGGTTTGGTTGGTGGTTTTTTGTTGTACAACAACATCAGCAACAAAA
ATACATATTATGGATGACTACAGTACACCATCATTCATCCTATCGGTTAT
CAGATTTTCAAGCAACGTTGGCTATCCCAAGTATTTGTTGCCAGATGAAG
GCAGTCAATTAGTCAAAGGATGTGATTCTCTCCGACTCAACTTTAAGGAT
CTTCAAAACCAACTTCATCGCGACACAATGATCGAATTTGAAGTATGTCC
AGTTTCAGGTCATTTCATGCACGGAAAGGTAGAAAGGAAGattcaagaaa
taaagaaatcaaTCGAGATGAATTTCCACAACCATAAGCTTTCCTTAATG
CAATGGGAAACTGTTGCAGCACAAGTTGGAAATACAATCAATGACATGCC
ACTTGCTCTTGCTGGACAGACTGATTACGAGATATCTGATGTCTTAACAC
CAAATCGTCTGCTACTGGGCAGAAATAACGAGAGAAGTCCAACCTTTCCT
GTTGATGTTAGCACAAAACCTGATAAATTCATCAGGTTGAATCAAGAGAT
ATTTCAAGCGTGGTTCGAAACATGGCTCGTTGTCCATGTGCCACGGCTAA
TGCATCGACCAAAAT Coding sequence (CDS) from alignment at sc0004874:2..1366 >TCONS_00044042 ID=TCONS_00044042|Name=TCONS_00044042|organism=Clytia hemisphaerica|type=CDS|length=726bp|location=Sequence derived from alignment at sc0004874:2..1366 (Clytia hemisphaerica)
ATGGGTCCAGTATCCCAGCACAGTCTCAATATTGCACCACCATTTTATTC
AACTCAAGTGGATCTATGTGGTCCATTCAGTgcattttcaagtttcaata
aGCGAAAGAGTATAAAGGTTTGGTTGGTGGTTTTTTGTTGTACAACAACA
TCAGCAACAAAAATACATATTATGGATGACTACAGTACACCATCATTCAT
CCTATCGGTTATCAGATTTTCAAGCAACGTTGGCTATCCCAAGTATTTGT
TGCCAGATGAAGGCAGTCAATTAGTCAAAGGATGTGATTCTCTCCGACTC
AACTTTAAGGATCTTCAAAACCAACTTCATCGCGACACAATGATCGAATT
TGAAGTATGTCCAGTTTCAGGTCATTTCATGCACGGAAAGGTAGAAAGGA
AGattcaagaaataaagaaatcaaTCGAGATGAATTTCCACAACCATAAG
CTTTCCTTAATGCAATGGGAAACTGTTGCAGCACAAGTTGGAAATACAAT
CAATGACATGCCACTTGCTCTTGCTGGACAGACTGATTACGAGATATCTG
ATGTCTTAACACCAAATCGTCTGCTACTGGGCAGAAATAACGAGAGAAGT
CCAACCTTTCCTGTTGATGTTAGCACAAAACCTGATAAATTCATCAGGTT
GAATCAAGAGATATTTCAAGCGTGGTTCGAAACATGGCTCGTTGTCCATG
TGCCACGGCTAATGCATCGACCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044042-exon-sc0004874-1491911889:2..1366 | TCONS_00044042-exon-sc0004874-1491911889:2..1366 | Clytia hemisphaerica | exon |
| TCONS_00044042-exon-sc0004874-1510915933:2..1366 | TCONS_00044042-exon-sc0004874-1510915933:2..1366 | Clytia hemisphaerica | exon |
| TCONS_00044042-exon-sc0004874-1575043694:2..1366 | TCONS_00044042-exon-sc0004874-1575043694:2..1366 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004874 | supercontig | sc0004874:2..1366 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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