TCONS_00044036 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044036
Unique NameTCONS_00044036
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1056

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044036 ID=TCONS_00044036|Name=TCONS_00044036|organism=Clytia hemisphaerica|type=transcript|length=1056bp
GAGACATGTCAAATGACGATGTCAAATTAAACTACAGAAAGGCTTATTAA
AGAACTTTGTAAACTGTATTAATGGTTTGTCTTTTCCTTTTTTAGTGAAA
CCATCTGGTTATGAATTATTTAAGTAAGTTATTATAACTTTTAAACCATG
AATAAAGTGATGTCAAAGACTTAAGATTAATTGAAAAATTCGGAGCATAT
ACACATTGTGGATATATAATCATAGTGCCCTAGTAGGTTGGTTCcccctt
aaaaattgaaaaaatcccCCCGGGACACTTTTGtaaaattaaaaccttta
aGGTAGACGGTACTTGTTTATCCaacctctttgaaaaaaaaacttgaatc
aAACTCCCtttgaaaatactaaaaattctttcttttcagGAGTTTCGTCG
ATTTGGGTGCAGGATTAAGTGTAGGTCTTAGTGGATTAGCTGCAGGCTTT
GCCATTGGAATTGTTGGTGATGCCGGTGTCCGAGGAACTGCTCAACAACC
AAGATTGTATGTTGGAATGATTTTGATTCTTATTTTCGCTGAAGTATTGG
GTTTATACGGACTAATTGTCGCTCTTATGTTGACCACCAAATAAAGTATT
TCATTGAATTAACTTCACACAATAGTTTTTTTATcgaattaaattaaaat
ttaacaTGTACAAAAAGTAAACTTGTAAAAGATCTTTGTCTTACCAACAG
TTGAACAAAAGCGAAAGATTTTCTCTTTCAGCTGactaaaaaatttattt
tacataattctctagggtatttttctttttatatttttgtacgCATTaag
ttatgtttttgtttccaTGTTGACGTACTCTTTAGTGGGTTTTTAATATT
CTTTGTTCATCCATCCATTGGTGTAGTAATAATGGTGCCACTGCTCATCA
ATTTAGAATGATTTTTAAATGTTATTAGGACTCACATTTCCTTCATTTAC
TTTATGTGATTAGAGAaattgtaaattattttgatcCAAATATACTTCGT
TGGTCCTCGTTGTCATACTACTTATCAAATAACTATCTTTCTTTTCTATA
GTTGGA
Run BLAST on NCBI

transcript from alignment at sc0004869:27..1082+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044036 ID=TCONS_00044036|Name=TCONS_00044036|organism=Clytia hemisphaerica|type=transcript|length=1056bp|location=Sequence derived from alignment at sc0004869:27..1082+ (Clytia hemisphaerica)
GAGACATGTCAAATGACGATGTCAAATTAAACTACAGAAAGGCTTATTAA
AGAACTTTGTAAACTGTATTAATGGTTTGTCTTTTCCTTTTTTAGTGAAA
CCATCTGGTTATGAATTATTTAAGTAAGTTATTATAACTTTTAAACCATG
AATAAAGTGATGTCAAAGACTTAAGATTAATTGAAAAATTCGGAGCATAT
ACACATTGTGGATATATAATCATAGTGCCCTAGTAGGTTGGTTCcccctt
aaaaattgaaaaaatcccCCCGGGACACTTTTGtaaaattaaaaccttta
aGGTAGACGGTACTTGTTTATCCaacctctttgaaaaaaaaacttgaatc
aAACTCCCtttgaaaatactaaaaattctttcttttcagGAGTTTCGTCG
ATTTGGGTGCAGGATTAAGTGTAGGTCTTAGTGGATTAGCTGCAGGCTTT
GCCATTGGAATTGTTGGTGATGCCGGTGTCCGAGGAACTGCTCAACAACC
AAGATTGTATGTTGGAATGATTTTGATTCTTATTTTCGCTGAAGTATTGG
GTTTATACGGACTAATTGTCGCTCTTATGTTGACCACCAAATAAAGTATT
TCATTGAATTAACTTCACACAATAGTTTTTTTATcgaattaaattaaaat
ttaacaTGTACAAAAAGTAAACTTGTAAAAGATCTTTGTCTTACCAACAG
TTGAACAAAAGCGAAAGATTTTCTCTTTCAGCTGactaaaaaatttattt
tacataattctctagggtatttttctttttatatttttgtacgCATTaag
ttatgtttttgtttccaTGTTGACGTACTCTTTAGTGGGTTTTTAATATT
CTTTGTTCATCCATCCATTGGTGTAGTAATAATGGTGCCACTGCTCATCA
ATTTAGAATGATTTTTAAATGTTATTAGGACTCACATTTCCTTCATTTAC
TTTATGTGATTAGAGAaattgtaaattattttgatcCAAATATACTTCGT
TGGTCCTCGTTGTCATACTACTTATCAAATAACTATCTTTCTTTTCTATA
GTTGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027691XLOC_027691Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044036-exon-sc0004869-1491911889:27..1082TCONS_00044036-exon-sc0004869-1491911889:27..1082Clytia hemisphaericaexon
TCONS_00044036-exon-sc0004869-1510915933:27..1082TCONS_00044036-exon-sc0004869-1510915933:27..1082Clytia hemisphaericaexon
TCONS_00044036-exon-sc0004869-1575043694:27..1082TCONS_00044036-exon-sc0004869-1575043694:27..1082Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004869supercontigsc0004869:27..1082 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
116.087	109.966	119.04	123.819	2.80356	1.36996	2.4864	2.90143	3.74076	3.66588	2.74238	6.13241	2.95442	1.93965	3.17904	3.83381	2.15657	2.71391	1.67736	3.55417	36.1206	40.3203	68.6943	63.682	0.345502	1.07732	42.0299	45.3246	82.0624	82.9058
Blast
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BLAST of TCONS_00044036 vs. Swiss-Prot (Human)
Match: VATL (V-type proton ATPase 16 kDa proteolipid subunit OS=Homo sapiens GN=ATP6V0C PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.394e-20
Identity = 63/70 (90.00%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:  382 LFRSFVDXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLYVGMILILIFAEVLGLYGLIVALMLTTK 591
            L++SF+ LGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRL+VGMILILIFAEVLGLYGLIVAL+L+TK
Sbjct:   86 LYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155
The following BLAST results are available for this feature:
BLAST of TCONS_00044036 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VATL4.394e-2090.00V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
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