TCONS_00044035 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044035
Unique NameTCONS_00044035
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length839

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044035 ID=TCONS_00044035|Name=TCONS_00044035|organism=Clytia hemisphaerica|type=transcript|length=839bp
TCTTCAGAGGAACTTAGGATGAAAGAGACATGTCAAATGACGATGTCAAA
TTAAACTACAGAAAGGCTTATTAAAGAACTTTGTAAACTGTATTAATGGT
TTGTCTTTTCCTTTTTTAGTGAAACCATCTGGTTATGAATTATTTAAGAG
TTTCGTCGATTTGGGTGCAGGATTAAGTGTAGGTCTTAGTGGATTAGCTG
CAGGCTTTGCCATTGGAATTGTTGGTGATGCCGGTGTCCGAGGAACTGCT
CAACAACCAAGATTGTATGTTGGAATGATTTTGATTCTTATTTTCGCTGA
AGTATTGGGTTTATACGGACTAATTGTCGCTCTTATGTTGACCACCAAAT
AAAGTATTTCATTGAATTAACTTCACACAATAGTTTTTTTATcgaattaa
attaaaatttaacaTGTACAAAAAGTAAACTTGTAAAAGATCTTTGTCTT
ACCAACAGTTGAACAAAAGCGAAAGATTTTCTCTTTCAGCTGactaaaaa
atttattttacataattctctagggtatttttctttttatatttttgtac
gCATTaagttatgtttttgtttccaTGTTGACGTACTCTTTAGTGGGTTT
TTAATATTCTTTGTTCATCCATCCATTGGTGTAGTAATAATGGTGCCACT
GCTCATCAATTTAGAATGATTTTTAAATGTTATTAGGACTCACATTTCCT
TCATTTACTTTATGTGATTAGAGAaattgtaaattattttgatcCAAATA
TACTTCGTTGGTCCTCGTTGTCATACTACTTATCAAATAACTATCTTTCT
TTTCTATAGTTGGAAAACAATTCTAATTTTAGAAATTGT
Run BLAST on NCBI

transcript from alignment at sc0004869:3..1107+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044035 ID=TCONS_00044035|Name=TCONS_00044035|organism=Clytia hemisphaerica|type=transcript|length=1105bp|location=Sequence derived from alignment at sc0004869:3..1107+ (Clytia hemisphaerica)
TCTTCAGAGGAACTTAGGATGAAAGAGACATGTCAAATGACGATGTCAAA
TTAAACTACAGAAAGGCTTATTAAAGAACTTTGTAAACTGTATTAATGGT
TTGTCTTTTCCTTTTTTAGTGAAACCATCTGGTTATGAATTATTTAAGTA
AGTTATTATAACTTTTAAACCATGAATAAAGTGATGTCAAAGACTTAAGA
TTAATTGAAAAATTCGGAGCATATACACATTGTGGATATATAATCATAGT
GCCCTAGTAGGTTGGTTCccccttaaaaattgaaaaaatcccCCCGGGAC
ACTTTTGtaaaattaaaacctttaaGGTAGACGGTACTTGTTTATCCaac
ctctttgaaaaaaaaacttgaatcaAACTCCCtttgaaaatactaaaaat
tctttcttttcagGAGTTTCGTCGATTTGGGTGCAGGATTAAGTGTAGGT
CTTAGTGGATTAGCTGCAGGCTTTGCCATTGGAATTGTTGGTGATGCCGG
TGTCCGAGGAACTGCTCAACAACCAAGATTGTATGTTGGAATGATTTTGA
TTCTTATTTTCGCTGAAGTATTGGGTTTATACGGACTAATTGTCGCTCTT
ATGTTGACCACCAAATAAAGTATTTCATTGAATTAACTTCACACAATAGT
TTTTTTATcgaattaaattaaaatttaacaTGTACAAAAAGTAAACTTGT
AAAAGATCTTTGTCTTACCAACAGTTGAACAAAAGCGAAAGATTTTCTCT
TTCAGCTGactaaaaaatttattttacataattctctagggtatttttct
ttttatatttttgtacgCATTaagttatgtttttgtttccaTGTTGACGT
ACTCTTTAGTGGGTTTTTAATATTCTTTGTTCATCCATCCATTGGTGTAG
TAATAATGGTGCCACTGCTCATCAATTTAGAATGATTTTTAAATGTTATT
AGGACTCACATTTCCTTCATTTACTTTATGTGATTAGAGAaattgtaaat
tattttgatcCAAATATACTTCGTTGGTCCTCGTTGTCATACTACTTATC
AAATAACTATCTTTCTTTTCTATAGTTGGAAAACAATTCTAATTTTAGAA
ATTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027691XLOC_027691Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044035-exon-sc0004869-1491911889:3..149TCONS_00044035-exon-sc0004869-1491911889:3..149Clytia hemisphaericaexon
TCONS_00044035-exon-sc0004869-1510915933:3..149TCONS_00044035-exon-sc0004869-1510915933:3..149Clytia hemisphaericaexon
TCONS_00044035-exon-sc0004869-1575043694:3..149TCONS_00044035-exon-sc0004869-1575043694:3..149Clytia hemisphaericaexon
TCONS_00044035-exon-sc0004869-1491911889:416..1107TCONS_00044035-exon-sc0004869-1491911889:416..1107Clytia hemisphaericaexon
TCONS_00044035-exon-sc0004869-1510915933:416..1107TCONS_00044035-exon-sc0004869-1510915933:416..1107Clytia hemisphaericaexon
TCONS_00044035-exon-sc0004869-1575043694:416..1107TCONS_00044035-exon-sc0004869-1575043694:416..1107Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004869supercontigsc0004869:3..1107 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1430.01	1416.85	1422.64	1486.81	315.72	240.361	392.687	397.359	539.465	507.576	454.909	465.14	463.811	468.682	552.987	573.998	438.109	430.129	420.257	450.881	479.469	468.205	908.39	805.48	207.04	209.861	545.558	575.67	1147.31	1080.09
Blast
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BLAST of TCONS_00044035 vs. Swiss-Prot (Human)
Match: VATL (V-type proton ATPase 16 kDa proteolipid subunit OS=Homo sapiens GN=ATP6V0C PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.545e-21
Identity = 64/71 (90.14%), Postives = 69/71 (97.18%), Query Frame = 2 
Query:  137 ELFKSFVDXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLYVGMILILIFAEVLGLYGLIVALMLTTK 349
             L+KSF+ LGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRL+VGMILILIFAEVLGLYGLIVAL+L+TK
Sbjct:   85 SLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155
The following BLAST results are available for this feature:
BLAST of TCONS_00044035 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VATL7.545e-2190.14V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
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