TCONS_00044008 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044008
Unique NameTCONS_00044008
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length456

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044008 ID=TCONS_00044008|Name=TCONS_00044008|organism=Clytia hemisphaerica|type=transcript|length=456bp
ATAGATGTAAAACTATAAATtcgaaatgtttaaaaatgtcaTACACAAAT
ACAAGCTCAATTTTAAAACAGTGGGACGTGTAGCAATAATACAGTAAAAT
CTGTGGtgtaaaaaacaaaaagcaaaatCGGTGATCCAAGTTTCAAAAGT
CTTTCTACGATGCATTCAAGGTACTGTACttgtaggctgcacgcatcccc
taaaatagtttttgatataggggatgcgaatcagacTCTCAAACTAGTTC
CGACTTCGCAAATTTTTTGCTAAGTGATTTGGCGAGTTATATAATGCTGA
CGCAGGCTGACTATATCAAAAGTAATCAGAGGGGATGCAGGCAGCCTACT
GTACTTGGAGATTTCTCTGttataatttttcataattatcaacaaaattt
agaaattacaATCTAATAGAAAGTGTTTGagataaacaaaaattttcata
gGCGtt
Run BLAST on NCBI

transcript from alignment at sc0004840:632..1087

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044008 ID=TCONS_00044008|Name=TCONS_00044008|organism=Clytia hemisphaerica|type=transcript|length=456bp|location=Sequence derived from alignment at sc0004840:632..1087 (Clytia hemisphaerica)
aaCGCctatgaaaatttttgtttatctCAAACACTTTCTATTAGATtgta
atttctaaattttgttgataattatgaaaaattataaCAGAGAAATCTCC
AAGTACAGTAGGCTGCCTGCATCCCCTCTGATTACTTTTGATATAGTCAG
CCTGCGTCAGCATTATATAACTCGCCAAATCACTTAGCAAAAAATTTGCG
AAGTCGGAACTAGTTTGAGAgtctgattcgcatcccctatatcaaaaact
attttaggggatgcgtgcagcctacaaGTACAGTACCTTGAATGCATCGT
AGAAAGACTTTTGAAACTTGGATCACCGattttgctttttgttttttaca
CCACAGATTTTACTGTATTATTGCTACACGTCCCACTGTTTTAAAATTGA
GCTTGTATTTGTGTAtgacatttttaaacatttcgaATTTATAGTTTTAC
ATCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027664XLOC_027664Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044008-exon-sc0004840-1491911889:632..1087TCONS_00044008-exon-sc0004840-1491911889:632..1087Clytia hemisphaericaexon
TCONS_00044008-exon-sc0004840-1510915933:632..1087TCONS_00044008-exon-sc0004840-1510915933:632..1087Clytia hemisphaericaexon
TCONS_00044008-exon-sc0004840-1575043694:632..1087TCONS_00044008-exon-sc0004840-1575043694:632..1087Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004840supercontigsc0004840:632..1087 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
330.503	342.641	258.582	229.594	0.193699	0.175988	0	0	0.126309	0.29985	0	0.19132	0	0	0.0815605	0	0	0.223978	0	0.159776	0.555496	0.204321	56.4882	53.9013	0	0.55053	2.56037	3.78346	27.9412	32.4854
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044008 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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