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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043998 ID=TCONS_00043998|Name=TCONS_00043998|organism=Clytia hemisphaerica|type=transcript|length=1226bp
AAAAAGACGGATGGGTTcgtgatgttttggacatggtTAGAGGGAAGGAA
CCTGGATATATAAACGGACAGTTCACTTCAAACGAGAGGATCATTTTAAT
ACTTTAATGGTCTatgaaaaataacaagaaaTATGTTGTAATGATTTTTG
GAATAACAGACATTGAACCTTTGAATAAAACCAAAGGAGTCTTCCAAAAA
TTGTCAGAGTGATAATGACCTGTTCCTTTGAATCTGTGTTGGCTGACTGT
TCTGTTGGAACTGAGGTGAGGCCNTTGGAATAACAGACATTGAACCTTTG
AATAAAACCAAAGGAGTCTTCCAAAAATTGTCAGAGTGATAATGACCTGT
TCCTTTGAATCTGTGTTGGCTGACTGTTCTGTTGGAACTGAGGTGAGGCC
TTGAGTAGTCATTATGTTTCAGCATGTACCTATGTAAAGACCCTGTCTTC
GTAAACATTCGCCAACCAAAAGGCTGAAAGGCTGAAAGGAATTTTGAACT
TTGAATCTGACTGCAGActagtttttttgtaaaagtatttttgatttatt
tccttgtaaaatttcaattttatgttGGTTAGGGGTGGTTAGGCTAGGGC
CACATAATTGTTGAAAGTAAATCTTTCTCCATTAATCTCCTGAAATGTTG
AAGACATCACTACAGTAGTACAGCGGCCCATGTAAAAGGGGGGGAACTTT
TGGTAGGCTTGGCATGCCCCCTATTCCCCACTGTCTCTTTGCCTTGCGAA
TACATATAGTAGAACTTCTTTTTAGGGATATTTTTTGTGGAATTTGATGA
GTAAAGTGCAATTTGAACCGTTGAGAAATAGGAGAGCTATGACCTCATAC
GTATGGTAGTAGACAAAAATTGACCAGACATAATTTGAAATGGCTTTTAA
TCACTTTTTACTCTCTTGGGGTCTATGTAATACAACATTCATTTAgatat
tcttcattttcatgcTTGCTTTGCATCTCCCTTGAAATTTTGTGTATGTG
CACCTTAAAGGTATTATGGAGGattttttattgtattatttcaaagaatt
ttagtCCAGGAAACGTTCTACTATACTATAATTATGACCGAAAAGAATTT
ACATCCTCTGACTTGATATTATCATCATAACCTTGCTTTTCCCCCAACTT
TTAACTGTTGGTATTTCGATCACTTTGAGAGTAAACAAAGGCAAAACTTT
GAGAGATATATACATCATGGTATGAC Run BLAST on NCBI protein sequence of TCONS_00043998-protein >TCONS_00043998-protein ID=TCONS_00043998-protein|Name=TCONS_00043998-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MTTQGLTSVPTEQSANTDSKEQVIITLTIFGRLLWFYSKVQCLLFQXPHL
SSNRTVSQHRFKGTGHYHSDNFWKTPLVLFKGSMSVIPKIITTYFLLFFI
DH Run BLAST on NCBI transcript from alignment at sc0004826:4272..5497 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043998 ID=TCONS_00043998|Name=TCONS_00043998|organism=Clytia hemisphaerica|type=transcript|length=1226bp|location=Sequence derived from alignment at sc0004826:4272..5497 (Clytia hemisphaerica)
GTCATACCATGATGTATATATCTCTCAAAGTTTTGCCTTTGTTTACTCTC
AAAGTGATCGAAATACCAACAGTTAAAAGTTGGGGGAAAAGCAAGGTTAT
GATGATAATATCAAGTCAGAGGATGTAAATTCTTTTCGGTCATAATTATA
GTATAGTAGAACGTTTCCTGGactaaaattctttgaaataatacaataaa
aaatCCTCCATAATACCTTTAAGGTGCACATACACAAAATTTCAAGGGAG
ATGCAAAGCAAgcatgaaaatgaagaatatcTAAATGAATGTTGTATTAC
ATAGACCCCAAGAGAGTAAAAAGTGATTAAAAGCCATTTCAAATTATGTC
TGGTCAATTTTTGTCTACTACCATACGTATGAGGTCATAGCTCTCCTATT
TCTCAACGGTTCAAATTGCACTTTACTCATCAAATTCCACAAAAAATATC
CCTAAAAAGAAGTTCTACTATATGTATTCGCAAGGCAAAGAGACAGTGGG
GAATAGGGGGCATGCCAAGCCTACCAAAAGTTCCCCCCCTTTTACATGGG
CCGCTGTACTACTGTAGTGATGTCTTCAACATTTCAGGAGATTAATGGAG
AAAGATTTACTTTCAACAATTATGTGGCCCTAGCCTAACCACCCCTAACC
aacataaaattgaaattttacaaggaaataaatcaaaaatacttttacaa
aaaaactagTCTGCAGTCAGATTCAAAGTTCAAAATTCCTTTCAGCCTTT
CAGCCTTTTGGTTGGCGAATGTTTACGAAGACAGGGTCTTTACATAGGTA
CATGCTGAAACATAATGACTACTCAAGGCCTCACCTCAGTTCCAACAGAA
CAGTCAGCCAACACAGATTCAAAGGAACAGGTCATTATCACTCTGACAAT
TTTTGGAAGACTCCTTTGGTTTTATTCAAAGGTTCAATGTCTGTTATTCC
AANGGCCTCACCTCAGTTCCAACAGAACAGTCAGCCAACACAGATTCAAA
GGAACAGGTCATTATCACTCTGACAATTTTTGGAAGACTCCTTTGGTTTT
ATTCAAAGGTTCAATGTCTGTTATTCCAAAAATCATTACAACATAtttct
tgttatttttcatAGACCATTAAAGTATTAAAATGATCCTCTCGTTTGAA
GTGAACTGTCCGTTTATATATCCAGGTTCCTTCCCTCTAaccatgtccaa
aacatcacgAACCCATCCGTCTTTTT Coding sequence (CDS) from alignment at sc0004826:4272..5497 >TCONS_00043998 ID=TCONS_00043998|Name=TCONS_00043998|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at sc0004826:4272..5497 (Clytia hemisphaerica)
ATGACTACTCAAGGCCTCACCTCAGTTCCAACAGAACAGTCAGCCAACAC
AGATTCAAAGGAACAGGTCATTATCACTCTGACAATTTTTGGAAGACTCC
TTTGGTTTTATTCAAAGGTTCAATGTCTGTTATTCCAANGGCCTCACCTC
AGTTCCAACAGAACAGTCAGCCAACACAGATTCAAAGGAACAGGTCATTA
TCACTCTGACAATTTTTGGAAGACTCCTTTGGTTTTATTCAAAGGTTCAA
TGTCTGTTATTCCAAAAATCATTACAACATAtttcttgttatttttcatA
GACCATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043998-exon-sc0004826-1491911889:4272..5497 | TCONS_00043998-exon-sc0004826-1491911889:4272..5497 | Clytia hemisphaerica | exon |
| TCONS_00043998-exon-sc0004826-1510915933:4272..5497 | TCONS_00043998-exon-sc0004826-1510915933:4272..5497 | Clytia hemisphaerica | exon |
| TCONS_00043998-exon-sc0004826-1575043694:4272..5497 | TCONS_00043998-exon-sc0004826-1575043694:4272..5497 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004826 | supercontig | sc0004826:4272..5497 . |
Blast
The following BLAST results are available for this feature:
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