TCONS_00043995 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043995
Unique NameTCONS_00043995
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length790

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043995 ID=TCONS_00043995|Name=TCONS_00043995|organism=Clytia hemisphaerica|type=transcript|length=790bp
atttaatgcattttcgctaagcgctatattttcttaatgattgtttttct
ccttattgctatttaagtttcatcatcaggtaggtccattcagcatgttg
cttgtttctcTTTCCTCTTTCCTATTCCAACAATACAATGCTTACATAGT
TGACACATAATACACATTGACAGAAGTATTCCCTGCAATGTctgcaataa
aaaaaaaagtggtctcttcttctCAGTGGCTGCTTTCATAactctttaga
gctttagggtTTTGTGTTTGTGTGCCGGATAAAGGAAGAAAGAAAGCCAG
TTGCAAAATATTATAAACATTATTGACATTAACAGTAAAAGATGGCAGAT
GATGGGTCAAAAATCTTAAGATTCACGTCTGATACTGCCAGTCCCAAGCA
TCAAGAACCCTCTGGTAAGAAGTACCAAGCTACCGCAAAATATGACCGTA
AAGCATTGAAGAAAAGACTGGTAGTTGAAGAGTGGCTTCATTATGAATTA
CGAAGATTGTATCAGTGCAAGGAGGGAGAAGAGTATGGTGTGGAGATTGA
TCTAGATATTTTACTCCAAGAAAAAGATGGTGAAAAGCAACAGGAAATGT
TACAGaatttacttTCAGGATCAAAAGAGCCTGTAGAAGAATTTATTCAA
AATCTTTTGGAGAAGATAAAAAGCAGATTCTAcatattaaaatgaaaaaa
taagattGTCAGATGGTGAAATGATGCGTAATAATGGATCCTTTTCTAGC
AAGAGCAAAATATAAGTATGATGGTGAACAGGCAGATTAC
Run BLAST on NCBI

transcript from alignment at sc0004821:11..4614-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043995 ID=TCONS_00043995|Name=TCONS_00043995|organism=Clytia hemisphaerica|type=transcript|length=4604bp|location=Sequence derived from alignment at sc0004821:11..4614- (Clytia hemisphaerica)
ATTTAATGCATTTTCGCTAAGCGCTATATTTTCTTAATGATTGTTTTTCT
CCTTATTGCTATTTAAGTTTCATCATCAGGTAGGTCCATTCAGCATGTTG
CTTGTTTCTCTTTCCTCTTTCCTATTCCAACAATACAATGCTTACATAGT
TGACACATAATACACATTGACAGAAGTATTCCCTGCAATGTCTGCAATAA
AAAAAAAAGTGGTCTCTTCTTCTCAGTGGCTGCTTTCATAACTCTTTAGA
GCTTTAGGGTTTTGTGTTTGTGTGCCGGATAAAGGAAGAAAGAAAGCCAG
TTGCAAAATATTATAAACATTATTGACATTAACAGTAAAAGATGGCAGAT
GATGGGTCAAAAATCTTAAGATTCACGTCTGATACTGCCAGTCCCAAGCA
TCAAGAACCCTCTGGTAAGAAGTACCAAGCTACCGCAAAATATGACCGTA
AAGCATTGAAGAAAAGACTGGTAGTTGAAGAGTGGCTTCATTATGAATTA
CGAAGATTGTATCAGTGCAAGGTATTACTTTCTCATTTATTATTCTCTTA
GGAGAGCCAAACCATAATACAAAAAATTGGTGTGACAGTTGAAGTTTAAA
CCACATTAGGTGTACGAAAAGATTTGTTGTTACTTGAATAAGACTACTGC
AAGAATGACTTTTCTATATATACAATTGGGTTTATACACACTTCAAGATT
TTCCCTACCTCAAGAATCTTCAGATATTTTTGGTAGATAAATTCAAAGGA
AAACTTTGGTCAAAGAGAGATTGATCTTAGATATTTTACTCCAAGAAAAA
GATAGCAAAAAACAACAAGAAATGTTACAGGTCCAGATGTATTTTTGTTT
AATCATCTCCTTTAATTCACTTTTTTATAGGAGGGAGAAGAGTATGGTGT
GGAGATTGATCTAGATATTTTACTCCAAGAAAAAGATGGTGAAAAGCAAC
AGGAAATGTTACAGGTGCAAATGTATTCTCGTTTAATCATTATAAATACC
ATAATTGTATGTTTTTAGCATCAAAAACCTTGAAAATGTTTGATATCTTC
ACAAAAAACTATGAACACAACAATTTTGGTTAAGAAAATCTTAATTAAAT
AAAACCTTAAACATCAATAAAATTCCACCATATCCAAGGAAAAACTATTT
TAAAGAAAAAGAAATCAAATTTACTGTTTCCACTATAATCTGATTTTTTT
ATCATGCTCACTTGGTTATATATATATTTTTTTTTTAGAATTTACTTTCA
GGATCAAAAGAGCCTGTAGAAGTAAGTGTTTTGCAAAGTTTTTGTTTTTT
ATTTTGTTTGATTGCTCCCATCCAATTACTTCCATTACTTGCTTCACCCA
CCATTTTGTGGGAAATAAAATGAAATGAATCTAACCTTATATTGAATCAA
ACATAAAAAGCCAAGATTGTGTGGATCAAAAAAGGAAAACATAAAAACAC
TTTTCTTTAAACAATATTTCAATCTTTACAGATCTTTATTACAGTATATG
TCCTTATATTGAAATATCCATGTTTTTCTGTTTAGGAATTTATTCAAAAT
CTTTTGGAGAAGATAAAAAGCATGTAAGATGTTTTGATTTTTATCTTCGT
TACTTATTAGTGCAACTAATAAATTTGTGGTCCTGAAAGGACCAATTTAC
ATTACCAATTTTGATTTGGGGACCTGTGATAAGATAAAAAAGTTATTGAG
TCTGATTGGTAAGATGCTTAGTGTATAAAGGTGTATATAAATGNNNNNNN
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NNNNNNAAGACCTCATTAAATTCTATAAATTCTAACGTTTTAGTAATATT
TTAGAAAGTGTAATTTTTCAAATATTTACTAGTTTTTGAAAAATATATTC
TGTAATGAGTTTACAGTTGTCGTTCATCAGCGTTCATATTTTTTCTGTTC
AATTTGAATTAACATGTCTAAATGAAATGAGCTTCTAGAATGGTATCTAA
TCCAAATAGACCATTTTCCTGTAAATTTGCAAGATTTGTTGAGATTTTTT
GAAAAATCATTTTTTTGTTCTTTTGTATTTTATGTTTTACAGATTCTACA
TATTAAAATGAAAAAATAAGATTGTCAGATGGTGAAATGATGCGTAATAA
TGGATCCTTGTAAGTTTTTTAAGAAACCTTGTTATATAAATGGGCCAAAG
CTTAAATATCCATACCCAAAAACAAAGGCTTCATAATAGTTGGTTTAGCG
TTGGAAAGAAAATGCAGCTATAGTTGAGAGGCTTATTTAGTGCGAACCTA
CTAAGGCAATCATTCCACATATGCCATGACAAGGTGATTTTTACCGAGAA
TGGCAATTCAGCTTCCAAAAGAACAATTTTTATCTTTTTTTTGAATTATT
ATTTCAGTTCTAGCAAGAGCAAAATATAAGTATGATGGTGAACAGGCAGA
TTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027653XLOC_027653Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043995-exon-sc0004821-1575043694:4094..4614TCONS_00043995-exon-sc0004821-1575043694:4094..4614Clytia hemisphaericaexon
TCONS_00043995-exon-sc0004821-1575043694:3651..3734TCONS_00043995-exon-sc0004821-1575043694:3651..3734Clytia hemisphaericaexon
TCONS_00043995-exon-sc0004821-1575043694:3344..3376TCONS_00043995-exon-sc0004821-1575043694:3344..3376Clytia hemisphaericaexon
TCONS_00043995-exon-sc0004821-1575043694:3044..3079TCONS_00043995-exon-sc0004821-1575043694:3044..3079Clytia hemisphaericaexon
TCONS_00043995-exon-sc0004821-1575043694:306..374TCONS_00043995-exon-sc0004821-1575043694:306..374Clytia hemisphaericaexon
TCONS_00043995-exon-sc0004821-1575043694:11..57TCONS_00043995-exon-sc0004821-1575043694:11..57Clytia hemisphaericaexon
TCONS_00043995-exon-sc0004821-1510915933:4094..4614TCONS_00043995-exon-sc0004821-1510915933:4094..4614Clytia hemisphaericaexon
TCONS_00043995-exon-sc0004821-1510915933:3651..3734TCONS_00043995-exon-sc0004821-1510915933:3651..3734Clytia hemisphaericaexon
TCONS_00043995-exon-sc0004821-1510915933:3344..3376TCONS_00043995-exon-sc0004821-1510915933:3344..3376Clytia hemisphaericaexon
TCONS_00043995-exon-sc0004821-1510915933:3044..3079TCONS_00043995-exon-sc0004821-1510915933:3044..3079Clytia hemisphaericaexon
TCONS_00043995-exon-sc0004821-1510915933:306..374TCONS_00043995-exon-sc0004821-1510915933:306..374Clytia hemisphaericaexon
TCONS_00043995-exon-sc0004821-1510915933:11..57TCONS_00043995-exon-sc0004821-1510915933:11..57Clytia hemisphaericaexon
TCONS_00043995-exon-sc0004821-1491911889:4094..4614TCONS_00043995-exon-sc0004821-1491911889:4094..4614Clytia hemisphaericaexon
TCONS_00043995-exon-sc0004821-1491911889:3651..3734TCONS_00043995-exon-sc0004821-1491911889:3651..3734Clytia hemisphaericaexon
TCONS_00043995-exon-sc0004821-1491911889:3344..3376TCONS_00043995-exon-sc0004821-1491911889:3344..3376Clytia hemisphaericaexon
TCONS_00043995-exon-sc0004821-1491911889:3044..3079TCONS_00043995-exon-sc0004821-1491911889:3044..3079Clytia hemisphaericaexon
TCONS_00043995-exon-sc0004821-1491911889:306..374TCONS_00043995-exon-sc0004821-1491911889:306..374Clytia hemisphaericaexon
TCONS_00043995-exon-sc0004821-1491911889:11..57TCONS_00043995-exon-sc0004821-1491911889:11..57Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004821supercontigsc0004821:11..4614 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.59958e-07	1.52209	1.10646	0.59566	0.00133529	0.0826095	8.16113	0.0017651	0.186596	0.00340007	0.106167	1.42798	0.0308534	0	10.4881	0.2694	6.12103	6.54072	3.64894	6.11487	4.96138	3.50102e-06	0.351216	9.46021	8.51642	9.9526	7.14164	5.86959	0.0138817	0.513324
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043995 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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