TCONS_00043985 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043985
Unique NameTCONS_00043985
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length879

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043985 ID=TCONS_00043985|Name=TCONS_00043985|organism=Clytia hemisphaerica|type=transcript|length=879bp
atcaaaagttatgacggaaagcgtaaaactgtcatttttcccaaaaagac
aaggcgtgcacggggtgaagttcccaaagagaaggcgtggtaaaggttaa
ggaCATATTTCCACAATTTGAATTTATAAAATGTCTTCAACATTAATTGT
TATGGGTAccattaaaaaggaaaattaatGTAGATTTTGAATATATCGCT
TTAAAAcgaaaagctgaaaatttttatggttaaaaatcgaattaaaaata
tctcatgaaaaaaaatattcacacCGGAAGATACGACCTTAATAGCAACG
AGAATGCTCCCTTCAACTTGATGGCCATCAGAGTTTCTACTATGCGGatc
gaaaagaaaataattttgattgtaATGCATTACAGCTAGACAATTTCCAG
CTATTACTAAAACTGCACCAGAATGCTGCATTAAGAGTTCCTCCTGAACA
AAATTCACTGCAATATTTCCAGTctcaaaaaagccttcaaaagTGTTGAA
ATTTAGTGCACAAGTGCTTTCTCCTATATCAATGGTCTTAGAAAACTGCT
CAATATATGGGGACTGCCCTTTAATacccaactttttaaaattaaaatca
ccTTGGTCTAAAACATAATCCAAATCATGACTCTTCCATAGTGATAATCT
TCTAAACTTGGCATagcaaatagcaaaaaaacaatttgaggaACATTGTA
TACCCGCTGTCTCACCAAATTTACTGTTGCCCTGATGAAATGAACCTTGA
ACATTTGGACCTGGGTTAAGCTCTACATCGCCTGATAATAGGAGTGTGTA
ATtaactttgaaaaaagtaagGTTTGGATCTCCCGCTACATTGGGATATT
GAACGAAAATTCCATTTCTTGAAAGATTN
Run BLAST on NCBI

protein sequence of TCONS_00043985-protein

>TCONS_00043985-protein ID=TCONS_00043985-protein|Name=TCONS_00043985-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
NLSRNGIFVQYPNVAGDPNLTFFKVNYTLLLSGDVELNPGPNVQGSFHQG
NSKFGETAGIQCSSNCFFAICYAKFRRLSLWKSHDLDYVLDQGDFNFKKL
GIKGQSPYIEQFSKTIDIGESTCALNFNTFEGFFETGNIAVNFVQEELLM
QHSGAVLVIAGNCLAVMHYNQNYFLFDPHSRNSDGHQVEGSILVAIKVVS
SGVNIFFHEIFLIRFLTIKIFSFSF
Run BLAST on NCBI

transcript from alignment at sc0004808:2538..3416

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043985 ID=TCONS_00043985|Name=TCONS_00043985|organism=Clytia hemisphaerica|type=transcript|length=879bp|location=Sequence derived from alignment at sc0004808:2538..3416 (Clytia hemisphaerica)
NAATCTTTCAAGAAATGGAATTTTCGTTCAATATCCCAATGTAGCGGGAG
ATCCAAACcttacttttttcaaagttaATTACACACTCCTATTATCAGGC
GATGTAGAGCTTAACCCAGGTCCAAATGTTCAAGGTTCATTTCATCAGGG
CAACAGTAAATTTGGTGAGACAGCGGGTATACAATGTtcctcaaattgtt
tttttgctatttgctATGCCAAGTTTAGAAGATTATCACTATGGAAGAGT
CATGATTTGGATTATGTTTTAGACCAAggtgattttaattttaaaaagtt
gggtATTAAAGGGCAGTCCCCATATATTGAGCAGTTTTCTAAGACCATTG
ATATAGGAGAAAGCACTTGTGCACTAAATTTCAACActtttgaaggcttt
tttgagACTGGAAATATTGCAGTGAATTTTGTTCAGGAGGAACTCTTAAT
GCAGCATTCTGGTGCAGTTTTAGTAATAGCTGGAAATTGTCTAGCTGTAA
TGCATtacaatcaaaattattttcttttcgatCCGCATAGTAGAAACTCT
GATGGCCATCAAGTTGAAGGGAGCATTCTCGTTGCTATTAAGGTCGTATC
TTCCGgtgtgaatattttttttcatgagatatttttaattcgatttttaa
ccataaaaattttcagcttttcgTTTTAAAGCGATATATTCAAAATCTAC
attaattttcctttttaatggTACCCATAACAATTAATGTTGAAGACATT
TTATAAATTCAAATTGTGGAAATATGtccttaacctttaccacgccttct
ctttgggaacttcaccccgtgcacgccttgtctttttgggaaaaatgaca
gttttacgctttccgtcataacttttgat

Coding sequence (CDS) from alignment at sc0004808:2538..3416

>TCONS_00043985 ID=TCONS_00043985|Name=TCONS_00043985|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at sc0004808:2538..3416 (Clytia hemisphaerica)
AATCTTTCAAGAAATGGAATTTTCGTTCAATATCCCAATGTAGCGGGAGA
TCCAAACcttacttttttcaaagttaATTACACACTCCTATTATCAGGCG
ATGTAGAGCTTAACCCAGGTCCAAATGTTCAAGGTTCATTTCATCAGGGC
AACAGTAAATTTGGTGAGACAGCGGGTATACAATGTtcctcaaattgttt
ttttgctatttgctATGCCAAGTTTAGAAGATTATCACTATGGAAGAGTC
ATGATTTGGATTATGTTTTAGACCAAggtgattttaattttaaaaagttg
ggtATTAAAGGGCAGTCCCCATATATTGAGCAGTTTTCTAAGACCATTGA
TATAGGAGAAAGCACTTGTGCACTAAATTTCAACActtttgaaggctttt
ttgagACTGGAAATATTGCAGTGAATTTTGTTCAGGAGGAACTCTTAATG
CAGCATTCTGGTGCAGTTTTAGTAATAGCTGGAAATTGTCTAGCTGTAAT
GCATtacaatcaaaattattttcttttcgatCCGCATAGTAGAAACTCTG
ATGGCCATCAAGTTGAAGGGAGCATTCTCGTTGCTATTAAGGTCGTATCT
TCCGgtgtgaatattttttttcatgagatatttttaattcgatttttaac
cataaaaattttcagcttttcgTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027645XLOC_027645Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043985-proteinTCONS_00043985-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043985-exon-sc0004808-1491911889:2538..3416TCONS_00043985-exon-sc0004808-1491911889:2538..3416Clytia hemisphaericaexon
TCONS_00043985-exon-sc0004808-1510915933:2538..3416TCONS_00043985-exon-sc0004808-1510915933:2538..3416Clytia hemisphaericaexon
TCONS_00043985-exon-sc0004808-1575043694:2538..3416TCONS_00043985-exon-sc0004808-1575043694:2538..3416Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004808supercontigsc0004808:2538..3416 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.411459	0.528717	1.43403	1.01875	2.25674	2.46929	2.16585	3.3505	0.750388	1.60125	1.38605	1.33608	0.700345	0.766717	0.283112	0.624369	0.375608	0.358756	0.285583	0.670542	0.228605	0.299664	0.441274	0.369992	4.03727	5.25981	1.1306	0.175123	1.26823	0.345181
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006928htUSP_central_domain
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043985 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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