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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043982 ID=TCONS_00043982|Name=TCONS_00043982|organism=Clytia hemisphaerica|type=transcript|length=1601bp
GGAGATTTGTATCAATTGCCACCTGTAAGAGCAAAGCAAGTGTTTTCCCT
TGATGGATTTATAATAAGTTTGCTAAAGCTTTGGCGTAACTTTCAATTTG
CAGAACTTGATAAAGTCATGCGTCAACAGGGTGACAACacatttattgat
ttattaaaTAACGTAAGAATTGGAAGATTAACAGAGGATGAAGAAAAAAT
CCTGCAGTCAAGATTTGTTTCACCAGAGAATCCAGATTATCCTTGGGATG
CTCTTCACTTGTTTGCTGAGAATAGTCTTGTAAAAATTCACAATGAAAGA
ATGCTCAACACTTTGTCTACTCCTTTAGTCAATATTTTTGCACTAGAAGA
ATATCCTCATGGACTTGCTCCAAGTAAAATTAGAGAAATCAGGGATAAAA
ATTATACTGATACAGGTGGTCTTGTATATAATCTTGGAATTAAAGTTGGT
GCACGAATCATGTTAACTGCGAATATAGACATAAGCTTGTATATGGTCAG
CTTGGTACTGTGAAACACCTGACTATTTTAAATGGAAAGTGTGAAAAAAT
CTACATCCTTTTTGATGATGTTAAAGCTGGTAATGTAAAGAAAGATAGTG
ACAATTTTGCACGTCGCCATGGATATGTTCCAGTTGAAAGAACTGAAACC
AAGTTTGgagtttctaataaaaaatcaactctTATGATAACATGGACACA
ATTTCCTATTGTTCCATCCTATGCATGTACAGTTCATAAAGTACAAGGCT
TGACTCTTGAAAAAATCGTTGTCAGTTTTCAGTTGAATAAACAAACTTAT
TTTAATCCAGGTCAAATCTATGTGGCTTTGAGCCGCGTGACTTCTTTAAA
TGGATTGTATCTTACTGGCAACTATACATCTTCTGCTATTAAAGCAAATG
CTAGTGCAGAAAAAGAATATCAAAGACTAAGATCTGCAGAAAACTTACTG
GAACCCTTACTTTCAATTGTTCCTACCAACTCTAACTTGGTTCTGACTTT
ATTAAATATCAGATCCCTGAGGATAAAGTCAGCCTCAATCAGACACTACA
AAGAACTTATTGATTCTGATGTTATATTCTTTACTGAAACACAGATTTCC
TATGACTCAAGTGTTGATGAAATTGAATACAACATAAGACCTTTCCAAAT
AGTCTTCAATAATGATGAAGACAAGTTCAAAAGCTTAGCTGTTGGTTACA
AAGAATCTGTCTCGATTTCAGAAATTCAACACGTTTCTGGTTTTTCTTTG
ATTAAATTACAGAGAAATACATTTACAGGTATATGTACCGCAAAACCCAC
ACTAAATTTCTGacctaaataattattttttgggcTGCCTTTATCAAGAA
AATTGTTTGATGGTGCGAGGAGTCCCATGAAAAGAGTTCTTcctgatatt
tttcaatgatatatgttagattgtttttatatcattgctttttaaaattt
tcactttttttgaatacgtacctcaaaacccacatTTATATAATAGACAA
TATCTTTAAGTCCACTGGGTCAATCAAGGTAAAAATTTGCACCTGTACAT
CTAGGTAAGTTTGTTGTAGAACTAttcatatgttgataagttagTCTCAA
T Run BLAST on NCBI protein sequence of TCONS_00043982-protein >TCONS_00043982-protein ID=TCONS_00043982-protein|Name=TCONS_00043982-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MITWTQFPIVPSYACTVHKVQGLTLEKIVVSFQLNKQTYFNPGQIYVALS
RVTSLNGLYLTGNYTSSAIKANASAEKEYQRLRSAENLLEPLLSIVPTNS
NLVLTLLNIRSLRIKSASIRHYKELIDSDVIFFTETQISYDSSVDEIEYN
IRPFQIVFNNDEDKFKSLAVGYKESVSISEIQHVSGFSLIKLQRNTFTGI
CTAKPTLNF Run BLAST on NCBI transcript from alignment at sc0004803:4635..6235 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043982 ID=TCONS_00043982|Name=TCONS_00043982|organism=Clytia hemisphaerica|type=transcript|length=1601bp|location=Sequence derived from alignment at sc0004803:4635..6235 (Clytia hemisphaerica)
ATTGAGActaacttatcaacatatgaaTAGTTCTACAACAAACTTACCTA
GATGTACAGGTGCAAATTTTTACCTTGATTGACCCAGTGGACTTAAAGAT
ATTGTCTATTATATAAatgtgggttttgaggtacgtattcaaaaaaagtg
aaaattttaaaaagcaatgatataaaaacaatctaacatatatcattgaa
aaatatcaggAAGAACTCTTTTCATGGGACTCCTCGCACCATCAAACAAT
TTTCTTGATAAAGGCAgcccaaaaaataattatttaggtCAGAAATTTAG
TGTGGGTTTTGCGGTACATATACCTGTAAATGTATTTCTCTGTAATTTAA
TCAAAGAAAAACCAGAAACGTGTTGAATTTCTGAAATCGAGACAGATTCT
TTGTAACCAACAGCTAAGCTTTTGAACTTGTCTTCATCATTATTGAAGAC
TATTTGGAAAGGTCTTATGTTGTATTCAATTTCATCAACACTTGAGTCAT
AGGAAATCTGTGTTTCAGTAAAGAATATAACATCAGAATCAATAAGTTCT
TTGTAGTGTCTGATTGAGGCTGACTTTATCCTCAGGGATCTGATATTTAA
TAAAGTCAGAACCAAGTTAGAGTTGGTAGGAACAATTGAAAGTAAGGGTT
CCAGTAAGTTTTCTGCAGATCTTAGTCTTTGATATTCTTTTTCTGCACTA
GCATTTGCTTTAATAGCAGAAGATGTATAGTTGCCAGTAAGATACAATCC
ATTTAAAGAAGTCACGCGGCTCAAAGCCACATAGATTTGACCTGGATTAA
AATAAGTTTGTTTATTCAACTGAAAACTGACAACGATTTTTTCAAGAGTC
AAGCCTTGTACTTTATGAACTGTACATGCATAGGATGGAACAATAGGAAA
TTGTGTCCATGTTATCATAagagttgattttttattagaaactcCAAACT
TGGTTTCAGTTCTTTCAACTGGAACATATCCATGGCGACGTGCAAAATTG
TCACTATCTTTCTTTACATTACCAGCTTTAACATCATCAAAAAGGATGTA
GATTTTTTCACACTTTCCATTTAAAATAGTCAGGTGTTTCACAGTACCAA
GCTGACCATATACAAGCTTATGTCTATATTCGCAGTTAACATGATTCGTG
CACCAACTTTAATTCCAAGATTATATACAAGACCACCTGTATCAGTATAA
TTTTTATCCCTGATTTCTCTAATTTTACTTGGAGCAAGTCCATGAGGATA
TTCTTCTAGTGCAAAAATATTGACTAAAGGAGTAGACAAAGTGTTGAGCA
TTCTTTCATTGTGAATTTTTACAAGACTATTCTCAGCAAACAAGTGAAGA
GCATCCCAAGGATAATCTGGATTCTCTGGTGAAACAAATCTTGACTGCAG
GATTTTTTCTTCATCCTCTGTTAATCTTCCAATTCTTACGTTAtttaata
aatcaataaatgtGTTGTCACCCTGTTGACGCATGACTTTATCAAGTTCT
GCAAATTGAAAGTTACGCCAAAGCTTTAGCAAACTTATTATAAATCCATC
AAGGGAAAACACTTGCTTTGCTCTTACAGGTGGCAATTGATACAAATCTC
C Coding sequence (CDS) from alignment at sc0004803:4635..6235 >TCONS_00043982 ID=TCONS_00043982|Name=TCONS_00043982|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at sc0004803:4635..6235 (Clytia hemisphaerica)
tCAGAAATTTAGTGTGGGTTTTGCGGTACATATACCTGTAAATGTATTTC
TCTGTAATTTAATCAAAGAAAAACCAGAAACGTGTTGAATTTCTGAAATC
GAGACAGATTCTTTGTAACCAACAGCTAAGCTTTTGAACTTGTCTTCATC
ATTATTGAAGACTATTTGGAAAGGTCTTATGTTGTATTCAATTTCATCAA
CACTTGAGTCATAGGAAATCTGTGTTTCAGTAAAGAATATAACATCAGAA
TCAATAAGTTCTTTGTAGTGTCTGATTGAGGCTGACTTTATCCTCAGGGA
TCTGATATTTAATAAAGTCAGAACCAAGTTAGAGTTGGTAGGAACAATTG
AAAGTAAGGGTTCCAGTAAGTTTTCTGCAGATCTTAGTCTTTGATATTCT
TTTTCTGCACTAGCATTTGCTTTAATAGCAGAAGATGTATAGTTGCCAGT
AAGATACAATCCATTTAAAGAAGTCACGCGGCTCAAAGCCACATAGATTT
GACCTGGATTAAAATAAGTTTGTTTATTCAACTGAAAACTGACAACGATT
TTTTCAAGAGTCAAGCCTTGTACTTTATGAACTGTACATGCATAGGATGG
AACAATAGGAAATTGTGTCCATGTTATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043982-exon-sc0004803-1491911889:4635..6235 | TCONS_00043982-exon-sc0004803-1491911889:4635..6235 | Clytia hemisphaerica | exon |
| TCONS_00043982-exon-sc0004803-1510915933:4635..6235 | TCONS_00043982-exon-sc0004803-1510915933:4635..6235 | Clytia hemisphaerica | exon |
| TCONS_00043982-exon-sc0004803-1575043694:4635..6235 | TCONS_00043982-exon-sc0004803-1575043694:4635..6235 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004803 | supercontig | sc0004803:4635..6235 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004386 | helicase activity |
| GO:0005524 | ATP binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0004386 |
helicase activity |
Blast
The following BLAST results are available for this feature:
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