TCONS_00043981 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043981
Unique NameTCONS_00043981
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length586

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043981 ID=TCONS_00043981|Name=TCONS_00043981|organism=Clytia hemisphaerica|type=transcript|length=586bp
GTCCTTCTGACAATAAAAAAGGTTAAGCcaaatgaagaaaagaaagCAAC
CACAACTACAAGGGTGACTCAGGTATACGGTTCAATGAGGGCTAAAGATG
TAGCAACCAAGGTAAAAAAATCAAGGATGAGAAGCTGAAGAAGGaaagtg
aaaaagaagaagagagaGGAGATCAGAGAAACATTCATCAAATGCAAAAA
CTTAATGTATCTGTTTACAACAAAAATGCTTGGCTTTGGGATTAAAGCAG
TTCCCAGTATGTCTATGTTCTTCGTTCAGTTTGCAGCAAAGCAAGCTATA
ATATAAAGTTAATGGAATCAAACCACTGATGATATTACCAACTAAACAAC
ATTAAATCTCTAAATGATTGTTTGAGGAGGATTCGTCATCAGATGAGGAA
GGTGAGGAATTTGAATCGGAAGGAAGCGAAATGTCCGAAGATGAAACTGT
TGATGAAAGCGACATCCCAAAACTCAAGAATTGCTGGAAAGGCCTGGCAC
TGCAAACAGACTGGTATGCGGCCATCTACAccacaaagaaaacaaaaagg
ttgtATATTGGTCGTTTGTTGAAGAGATTCTTAAAA
Run BLAST on NCBI

transcript from alignment at sc0004803:2988..3573

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043981 ID=TCONS_00043981|Name=TCONS_00043981|organism=Clytia hemisphaerica|type=transcript|length=586bp|location=Sequence derived from alignment at sc0004803:2988..3573 (Clytia hemisphaerica)
TTTTAAGAATCTCTTCAACAAACGACCAATATacaacctttttgttttct
ttgtggTGTAGATGGCCGCATACCAGTCTGTTTGCAGTGCCAGGCCTTTC
CAGCAATTCTTGAGTTTTGGGATGTCGCTTTCATCAACAGTTTCATCTTC
GGACATTTCGCTTCCTTCCGATTCAAATTCCTCACCTTCCTCATCTGATG
ACGAATCCTCCTCAAACAATCATTTAGAGATTTAATGTTGTTTAGTTGGT
AATATCATCAGTGGTTTGATTCCATTAACTTTATATTATAGCTTGCTTTG
CTGCAAACTGAACGAAGAACATAGACATACTGGGAACTGCTTTAATCCCA
AAGCCAAGCATTTTTGTTGTAAACAGATACATTAAGTTTTTGCATTTGAT
GAATGTTTCTCTGATCTCCtctctcttcttctttttcactttCCTTCTTC
AGCTTCTCATCCTTGATTTTTTTACCTTGGTTGCTACATCTTTAGCCCTC
ATTGAACCGTATACCTGAGTCACCCTTGTAGTTGTGGTTGctttcttttc
ttcatttgGCTTAACCTTTTTTATTGTCAGAAGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027641XLOC_027641Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043981-exon-sc0004803-1491911889:2988..3573TCONS_00043981-exon-sc0004803-1491911889:2988..3573Clytia hemisphaericaexon
TCONS_00043981-exon-sc0004803-1510915933:2988..3573TCONS_00043981-exon-sc0004803-1510915933:2988..3573Clytia hemisphaericaexon
TCONS_00043981-exon-sc0004803-1575043694:2988..3573TCONS_00043981-exon-sc0004803-1575043694:2988..3573Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004803supercontigsc0004803:2988..3573 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.97768	1.16961	1.4569	2.14075	0.90091	0.427134	0.296733	0.116495	0.138585	0.682737	0.322848	0.84866	0.599433	0.808431	0.180132	0.586557	0.498684	0.314052	0.497594	0.362477	0.308466	0.173139	0.604123	0.121046	0	0.664247	0.129037	0.819364	0.267333	0.881839
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043981 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top