TCONS_00043973 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043973
Unique NameTCONS_00043973
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1243

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043973 ID=TCONS_00043973|Name=TCONS_00043973|organism=Clytia hemisphaerica|type=transcript|length=1243bp
ATTCGACCTCCCAGGCCTAGcccaaatagaaaaggggatagactccctca
ctcccggctcaaACGAAAGCCACCAGACGAATATACTTACTTATGTAGAG
TGTACAAAGCAGAAGAGACATTGACAACAGACTTTCTAATATTCTGCCAG
CATCACTATGATATTTGTTTTATTGTAAGGGTGCAAGATCTGCCCCAATA
ATCACGTCCGCTTTTTCCATAATCACTAAAAGTCGTTACAGGTTTTtaac
cttcttttttttcaatctatACATTTAACATGGTGTTGGTGGTTTGGGGG
ATATTCATTTATTGCCCACTGTGTGGCGTTAGTTCTGGATGCAGCTTTTG
TGCTTCGTTTTATTGAACTTTCAACTGGTACTTCGATCTACAGTTATTTC
TCTCAATTTGTTCGacttacagagagattcgaattacagagagtatttta
gGAAGGTGACTGGAACTGAGAATGagctcgaattatagaaaaattcgaaa
aatagtCGAAAATTAGCGAGAGTCCACTGTATTTGCACTGCAAGAATACT
TCTAACTTTTCATTTATCAGGATTCTTGGGGAAGTGTAATGAGCATCATC
AATTACAATGGTGACCACCAAGATGAAATCATCCCATACGTTAGTAATGG
TGCTTATAATGATATTGATATGCTTTTAATTGGTGACTACAGCTTGAGTG
AAGATCAATCGAAAACACAATTCGCAATGTGGTCCATCTTAGCTGCACCT
TTGTTCATGTCTGCCGATTTGTCTTCCATGAAAGATTGGCAAAAGGATAT
CCTGCTAAACACCGAAGTGATTGCTGTCAATCAAGATCCTATGGGCAAAA
TGGGTAGAAGGTTCTATAAGCAAAACAATCAACAGAATTGGGTTCGTGAT
CTAGCCGACGGTGGAATGGCTGTGGCTATCATGAGCACACGTGAAGATAA
CCCAGTTTTTATGAGCGTCGATTTTTCACAGGTATTTCTCATTTCTCGTA
CCACTTGATGTACTCTATACCGGAGTGTAtgtcacgtttatcgcttcgta
atGCACTCTGCACGCATTGTCATTGTTCCTCTGCGATGaggtatgattta
taaatagcaacacttctctcgttgtctcccctctctcagcaacactccat
cgcagcggtcggttcaaaaatcctcaaataaaaaagacaatgccaacaga
ccctctacggtattagccgtagatactgagtctgtgtacagac
Run BLAST on NCBI

protein sequence of TCONS_00043973-protein

>TCONS_00043973-protein ID=TCONS_00043973-protein|Name=TCONS_00043973-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MSIINYNGDHQDEIIPYVSNGAYNDIDMLLIGDYSLSEDQSKTQFAMWSI
LAAPLFMSADLSSMKDWQKDILLNTEVIAVNQDPMGKMGRRFYKQNNQQN
WVRDLADGGMAVAIMSTREDNPVFMSVDFSQVFLISRTT
Run BLAST on NCBI

transcript from alignment at sc0004799:2544..5513-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043973 ID=TCONS_00043973|Name=TCONS_00043973|organism=Clytia hemisphaerica|type=transcript|length=2970bp|location=Sequence derived from alignment at sc0004799:2544..5513- (Clytia hemisphaerica)
ATTCGACCTCCCAGGCCTAGCCCAAATAGAAAAGGGGATAGACTCCCTCA
CTCCCGGCTCAAACGAAAGCCACCAGACGAATATACTTACTTATGTAGAG
TGTACAAAGCAGAAGAGACATTGACAACAGACTTTCTAATATTCTGCCAG
CATCACTATGATATTTGTTTTATTGTAAGGGTGCAAGATCTGCCCCAATA
ATCACGTCCGCTTTTTCCATAATCACTAAAAGTCGTTACAGGTTTTTAAC
CTTCTTTTTTTTCAATCTATACATTTAACATGGTGTTGGTGGTTTGGGGG
ATATTCATTTATTGCCCACTGTGTGGCGTTAGTTCTGGATGCAGCTTTTG
TGCTTCGTTTTATTGAACTTTCAACTGGTACTTCGATCTACAGTTATTTC
TCTCAATTTGTTCGACTTACAGAGAGATTCGAATTACAGAGAGTATTTTA
GGAAGGTGACTGGAACTGAGAATGAGCTCGAATTATAGAAAAATTCGAAA
AATAGTCGAAAATTAGCGAGAGTCCACTGTATTTGCACTGCAAGAATACT
TCTAACTTTTCATTTATCAGGATTCTTGGGGAAGTGTAATGAGCATCATC
AATTACAATGGTGACCACCAAGATGAAATCATCCCATACGTTAGTAATGG
TGCTTATAATGATATTGATATGGTGAGTATAGACCATGGGTCTGTTCGGT
GAATGATACCAAATTTTAGTCACTGATATCTTATGTAAAACACTAGCTAC
CTTAAGGGAAGAAGTTTTGGCTTTCTATTTCCGATTTTTCACAATTTACC
CCCGATATCAATATTTTAACCCTGATCTCGGATTTAAAAATCTGTCATCC
GCCAAATTAAATTCTCGTCAAAATTAGCTTTTTACCTGATCCGCCAAATT
AAATTCCCGCCAAAATTTGTTCCCTTAAGCTATTTCATTTCGATAAAGAC
AAACTTTACCTGATCAAAGATCTTTCTTTCCTTGACTTCAATAAGCTACG
CTACTGTTGTTCCTCTCATTCCAGCTTTTAATTGGTGACTACAGCTTGAG
TGAAGATCAATCGAAAACACAATTCGCAATGTGGTCCATCTTAGCTGCAG
TAAGGAATTAAACTTTAATGCTCTGTATCTAAAACTTGGCTTCAAAGATC
TCAAATATTACTTTTACTGCAACTGAATCAGAAGATTTAATAACTGTCTG
GTGGTAAGATAAAGGATTTCTTCTGGTTTTACTCTGATTTGATTTCGAAT
TGATTATGCTTGTTTTTTCGTTTTTAGCCTTTGTTCATGTCTGTCTATTT
GTACTTTGGGCTCTCTTAGCCACCAAACTGAATTAGATAATTGAATAATT
CATTTTTTGCAACCTCTTATGAATGTACTTTCATAAAATACCTAATTTCG
AAAATTTCCATTATATCGCAAAGTGTCGCAAAATTTTATTCAAATGTTTT
CAGCCTTTGTTCATGTCTGCCGATTTGTCTTCCATGAAAGATTGGCAAAA
GGATATCCTGCTAAACACGTAAGATATTTTTTTCATTTATCATCATATTT
CTTCAAATTGAACTTACCTGGAGGTTCTATAAATCAACCCATGTTCCTTC
GTCCGTCCGTCTGTTCGTTCGTTCGTTCGCCCGTCTGTTACCAGCTTTTC
TCGGGATTGGTTCATTACTAAGTTTTTCCTGAATTTTGTACAATGGTGCA
AAATGGTGATACCCAAAATGTGACGGAGCCCAATTTTATTTCCATTTACT
TATCAAATCAATCTTCAGGATATCTTCAGCATGTATTATGTTTTGAATCA
TTTCAAATCTGCTTACTTTTGTTGGGTTTGTTTAACGTACGGAGCAATTA
GCATTGTTGTTTTTGAGAATTTATATCATTATTTTTCAGCGAAGTGATTG
CTGTCAATCAAGATCCTATGGGCAAAATGGGTAGAAGGTTCTATAAGGTT
TGTCAAACAAGTTTCTTTAGCCTATAATGTATGGCATTCGTCTAAAGTGT
TCAGGGTCGTGCACTCAATAGACGGGTTTCAAATTAGTTTTTTGCTTTGA
TTTCATGTTATTCGTACCAAAAAATATCAAGTAAATAAACTTTTATTTGT
TGAAAGCTGCACACATTAACATATTATCCAATCACAGAGTTACTTACTTG
ACATTTTTTCGTGCTGCTTACACGGAATCTAAACATTGACCTAATTCGAA
AAGGGTGTATTTCTGGCTGGGTCTTTCCCGGGCGTGTAAAATGTGATCTT
TTAATAAGATATTTTAAAGTCAATCTTTGCATATATGAAGCTGTTTGCTG
ATCTTGCGAAAACAATGCAGAAATATTTACTTCAATCATCAGCAGTGTAG
ATCATTCGTTGTAATTCTTATTCAACATTTTCGTCGCAAAAGCGCTCTAA
ATTGATGGACTGCATTATATAACTTTAGACATTCCATTTTCATAAAGAAC
TATGAACTGACGTAACGCGCGCTTTTTTGTTTTGATGATTCGTTTTAGAA
GTTGCAATGTTTTTGCAAGCTCAGCATTATTCATAGCGATTAAGACTTGA
AATTCAGCGAGAATTCAACAACTCTCTCTCTCTTTCTTTCTTTATAGCAA
AACAATCAACAGAATTGGGTTCGTGATCTAGCCGACGGTGGAATGGCTGT
GGCTATCATGAGCACACGTGAAGATAACCCAGTTTTTATGAGCGTCGATT
TTTCACAGGTATTTCTCATTTCTCGTACCACTTGATGTACTCTATACCGG
AGTGTATGTCACGTTTATCGCTTCGTAATGCACTCTGCACGCATTGTCAT
TGTTCCTCTGCGATGAGGTATGATTTATAAATAGCAACACTTCTCTCGTT
GTCTCCCCTCTCTCAGCAACACTCCATCGCAGCGGTCGGTTCAAAAATCC
TCAAATAAAAAAGACAATGCCAACAGACCCTCTACGGTATTAGCCGTAGA
TACTGAGTCTGTGTACAGAC

Coding sequence (CDS) from alignment at sc0004799:2544..5513-

>TCONS_00043973 ID=TCONS_00043973|Name=TCONS_00043973|organism=Clytia hemisphaerica|type=CDS|length=2100bp|location=Sequence derived from alignment at sc0004799:2544..5513- (Clytia hemisphaerica)
CAAAACAATCAACAGAATTGGGTTCGTGATCTAGCCGACGGTGGAATGGC
TGTGGCTATCATGAGCACACGTGAAGATAACCCAGTTTTTATGAGCGTCG
ATTTTTCACAGGTATTTCTCATTTCTCGTACCACTTGACGAAGTGATTGC
TGTCAATCAAGATCCTATGGGCAAAATGGGTAGAAGGTTCTATAAGCCTT
TGTTCATGTCTGCCGATTTGTCTTCCATGAAAGATTGGCAAAAGGATATC
CTGCTAAACACCTTTTAATTGGTGACTACAGCTTGAGTGAAGATCAATCG
AAAACACAATTCGCAATGTGGTCCATCTTAGCTGCAATGAGCATCATCAA
TTACAATGGTGACCACCAAGATGAAATCATCCCATACGTTAGTAATGGTG
CTTATAATGATATTGATATGCAAAACAATCAACAGAATTGGGTTCGTGAT
CTAGCCGACGGTGGAATGGCTGTGGCTATCATGAGCACACGTGAAGATAA
CCCAGTTTTTATGAGCGTCGATTTTTCACAGGTATTTCTCATTTCTCGTA
CCACTTGACGAAGTGATTGCTGTCAATCAAGATCCTATGGGCAAAATGGG
TAGAAGGTTCTATAAGCCTTTGTTCATGTCTGCCGATTTGTCTTCCATGA
AAGATTGGCAAAAGGATATCCTGCTAAACACCTTTTAATTGGTGACTACA
GCTTGAGTGAAGATCAATCGAAAACACAATTCGCAATGTGGTCCATCTTA
GCTGCAATGAGCATCATCAATTACAATGGTGACCACCAAGATGAAATCAT
CCCATACGTTAGTAATGGTGCTTATAATGATATTGATATGCAAAACAATC
AACAGAATTGGGTTCGTGATCTAGCCGACGGTGGAATGGCTGTGGCTATC
ATGAGCACACGTGAAGATAACCCAGTTTTTATGAGCGTCGATTTTTCACA
GGTATTTCTCATTTCTCGTACCACTTGACGAAGTGATTGCTGTCAATCAA
GATCCTATGGGCAAAATGGGTAGAAGGTTCTATAAGCCTTTGTTCATGTC
TGCCGATTTGTCTTCCATGAAAGATTGGCAAAAGGATATCCTGCTAAACA
CCTTTTAATTGGTGACTACAGCTTGAGTGAAGATCAATCGAAAACACAAT
TCGCAATGTGGTCCATCTTAGCTGCAATGAGCATCATCAATTACAATGGT
GACCACCAAGATGAAATCATCCCATACGTTAGTAATGGTGCTTATAATGA
TATTGATATGCAAAACAATCAACAGAATTGGGTTCGTGATCTAGCCGACG
GTGGAATGGCTGTGGCTATCATGAGCACACGTGAAGATAACCCAGTTTTT
ATGAGCGTCGATTTTTCACAGGTATTTCTCATTTCTCGTACCACTTGACG
AAGTGATTGCTGTCAATCAAGATCCTATGGGCAAAATGGGTAGAAGGTTC
TATAAGCCTTTGTTCATGTCTGCCGATTTGTCTTCCATGAAAGATTGGCA
AAAGGATATCCTGCTAAACACCTTTTAATTGGTGACTACAGCTTGAGTGA
AGATCAATCGAAAACACAATTCGCAATGTGGTCCATCTTAGCTGCAATGA
GCATCATCAATTACAATGGTGACCACCAAGATGAAATCATCCCATACGTT
AGTAATGGTGCTTATAATGATATTGATATGCAAAACAATCAACAGAATTG
GGTTCGTGATCTAGCCGACGGTGGAATGGCTGTGGCTATCATGAGCACAC
GTGAAGATAACCCAGTTTTTATGAGCGTCGATTTTTCACAGGTATTTCTC
ATTTCTCGTACCACTTGACGAAGTGATTGCTGTCAATCAAGATCCTATGG
GCAAAATGGGTAGAAGGTTCTATAAGCCTTTGTTCATGTCTGCCGATTTG
TCTTCCATGAAAGATTGGCAAAAGGATATCCTGCTAAACACCTTTTAATT
GGTGACTACAGCTTGAGTGAAGATCAATCGAAAACACAATTCGCAATGTG
GTCCATCTTAGCTGCAATGAGCATCATCAATTACAATGGTGACCACCAAG
ATGAAATCATCCCATACGTTAGTAATGGTGCTTATAATGATATTGATATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027634XLOC_027634Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043973-exon-sc0004799-1575043694:4842..5513TCONS_00043973-exon-sc0004799-1575043694:4842..5513Clytia hemisphaericaexon
TCONS_00043973-exon-sc0004799-1575043694:4415..4489TCONS_00043973-exon-sc0004799-1575043694:4415..4489Clytia hemisphaericaexon
TCONS_00043973-exon-sc0004799-1575043694:3996..4060TCONS_00043973-exon-sc0004799-1575043694:3996..4060Clytia hemisphaericaexon
TCONS_00043973-exon-sc0004799-1575043694:3567..3624TCONS_00043973-exon-sc0004799-1575043694:3567..3624Clytia hemisphaericaexon
TCONS_00043973-exon-sc0004799-1575043694:2544..2916TCONS_00043973-exon-sc0004799-1575043694:2544..2916Clytia hemisphaericaexon
TCONS_00043973-exon-sc0004799-1510915933:4842..5513TCONS_00043973-exon-sc0004799-1510915933:4842..5513Clytia hemisphaericaexon
TCONS_00043973-exon-sc0004799-1510915933:4415..4489TCONS_00043973-exon-sc0004799-1510915933:4415..4489Clytia hemisphaericaexon
TCONS_00043973-exon-sc0004799-1510915933:3996..4060TCONS_00043973-exon-sc0004799-1510915933:3996..4060Clytia hemisphaericaexon
TCONS_00043973-exon-sc0004799-1510915933:3567..3624TCONS_00043973-exon-sc0004799-1510915933:3567..3624Clytia hemisphaericaexon
TCONS_00043973-exon-sc0004799-1510915933:2544..2916TCONS_00043973-exon-sc0004799-1510915933:2544..2916Clytia hemisphaericaexon
TCONS_00043973-exon-sc0004799-1491911889:4842..5513TCONS_00043973-exon-sc0004799-1491911889:4842..5513Clytia hemisphaericaexon
TCONS_00043973-exon-sc0004799-1491911889:4415..4489TCONS_00043973-exon-sc0004799-1491911889:4415..4489Clytia hemisphaericaexon
TCONS_00043973-exon-sc0004799-1491911889:3996..4060TCONS_00043973-exon-sc0004799-1491911889:3996..4060Clytia hemisphaericaexon
TCONS_00043973-exon-sc0004799-1491911889:3567..3624TCONS_00043973-exon-sc0004799-1491911889:3567..3624Clytia hemisphaericaexon
TCONS_00043973-exon-sc0004799-1491911889:2544..2916TCONS_00043973-exon-sc0004799-1491911889:2544..2916Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043973-proteinTCONS_00043973-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004799supercontigsc0004799:2544..5513 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
87.8255	89.6087	97.18	96.3132	20.4787	17.4354	34.8163	34.9943	49.295	46.2723	44.2154	35.0975	37.4754	34.6648	49.4342	63.7384	45.8678	40.622	47.6086	53.7852	26.8702	25.5958	40.4889	39.1778	22.1	21.881	26.2735	26.0826	67.6189	58.4173
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002241Glyco_hydro_27
IPR013785Aldolase_TIM
IPR017853Glycoside_hydrolase_SF
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
molecular_function GO:0003824 catalytic activity
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
Blast
[Close]
BLAST of TCONS_00043973 vs. Swiss-Prot (Human)
Match: NAGAB (Alpha-N-acetylgalactosaminidase OS=Homo sapiens GN=NAGA PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 2.212e-29
Identity = 59/130 (45.38%), Postives = 86/130 (66.15%), Query Frame = 1 
Query:  568 QDSWGSVMSIINYNGDHQDEIIPYVSNGAYNDIDMLLIGDYSLSEDQSKTQFAMWSILAAPLFMSADLSSMKDWQKDILLNTEVIAVNQDPMGKMGRRFYKQNNQ-QNWVRDLADGGMAVAIMSTREDNP 954
            QDSW SV+SI+N+  +HQD + P    G +ND DMLLIG++ LS +QS+ Q A+W++LAAPL MS DL ++     DIL N  +I +NQDP+G  GRR +K+ +  + ++R L++   A+   S R D P
Sbjct:  219 QDSWWSVLSILNWFVEHQDILQPVAGPGHWNDPDMLLIGNFGLSLEQSRAQMALWTVLAAPLLMSTDLRTISAQNMDILQNPLMIKINQDPLGIQGRRIHKEKSLIEVYMRPLSNKASALVFFSCRTDMP 348
The following BLAST results are available for this feature:
BLAST of TCONS_00043973 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NAGAB2.212e-2945.38Alpha-N-acetylgalactosaminidase OS=Homo sapiens GN... [more]
back to top