TCONS_00043969 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043969
Unique NameTCONS_00043969
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length395

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043969 ID=TCONS_00043969|Name=TCONS_00043969|organism=Clytia hemisphaerica|type=transcript|length=395bp
ccttataaacgtgtttcttataaaaaaaacgtgtatcagtGCTCAAAATT
TACTAGAATCaatattatgaaaaataaaatacttttaaatcaATAAGGCT
TAATCAATTTTACCATAATAATTTAAAGTGGTTTTTGGTTAACGACATAC
GATATCCCCATAGCAACGGCTGAACTGGGGGCTGTTGATTTCGTTGGATT
TCTTTTTGGCTTTGTGTAAGTTTCTTTGAATAGTATTGGCCTAATAGTTA
GTTGGATATTGATTACCAACACTGTTTTTCATGGACATAAGTACTAAATT
TCTGAGTTTctttattttactttatttcttttcaatatttgggtattgta
taaattttttaaaactaaatGTAATGctaaatttttactttattg
Run BLAST on NCBI

transcript from alignment at sc0004787:5082..5476

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043969 ID=TCONS_00043969|Name=TCONS_00043969|organism=Clytia hemisphaerica|type=transcript|length=395bp|location=Sequence derived from alignment at sc0004787:5082..5476 (Clytia hemisphaerica)
caataaagtaaaaatttagCATTACatttagttttaaaaaatttatacaa
tacccaaatattgaaaagaaataaagtaaaataaagAAACTCAGAAATTT
AGTACTTATGTCCATGAAAAACAGTGTTGGTAATCAATATCCAACTAACT
ATTAGGCCAATACTATTCAAAGAAACTTACACAAAGCCAAAAAGAAATCC
AACGAAATCAACAGCCCCCAGTTCAGCCGTTGCTATGGGGATATCGTATG
TCGTTAACCAAAAACCACTTTAAATTATTATGGTAAAATTGATTAAGCCT
TATtgatttaaaagtattttatttttcataatattGATTCTAGTAAATTT
TGAGCactgatacacgttttttttataagaaacacgtttataagg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027630XLOC_027630Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043969-exon-sc0004787-1491911889:5082..5476TCONS_00043969-exon-sc0004787-1491911889:5082..5476Clytia hemisphaericaexon
TCONS_00043969-exon-sc0004787-1510915933:5082..5476TCONS_00043969-exon-sc0004787-1510915933:5082..5476Clytia hemisphaericaexon
TCONS_00043969-exon-sc0004787-1575043694:5082..5476TCONS_00043969-exon-sc0004787-1575043694:5082..5476Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004787supercontigsc0004787:5082..5476 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.21883	0.903952	0.718773	0	0	0.435096	0.352443	0	0.491545	0.191157	0.386794	0.302565	0.367499	0	0	0.484525	0	0	0.649625	0	0.000156583	0.611302	0	0	0.600677	0	0.399341	0.726159
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043969 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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