TCONS_00043955 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043955
Unique NameTCONS_00043955
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length731

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043955 ID=TCONS_00043955|Name=TCONS_00043955|organism=Clytia hemisphaerica|type=transcript|length=731bp
NNGAGATTTTCGGAATGTCAGAACTTGAGAAGATCGGATTTGAAGTTTTT
TACGACTCACGCCATGATTTTTATCGAGAAAAGTAAGACGGACTTTTACA
GACATGGGCATTGGTTGTGCCTCGCTAGGTTAAAATCACATTTTTGTCCA
GTGAGAGAATTAGAGTCGTACCGTACGAAGATAAAAGAAAATTCTAACTC
TAACAACTTTATTTTCAGAGCATtaacatcaaaacataaacttcGAAAGG
CTAACAAAGCAGTGTCGTATTCAACAATTCGTAACGAATTTAAAGCTATC
GTAAATGTGTTGGGTTTTGATAAAAGGTTGTNGCATtaacatcaaaacat
aaacttcGAAAGGCTAACAAAGCAGTGTCGTATTCAACAATTCGTAACGA
ATTTAAAGCTATCGTAAATGTGTTGGGTTTTGATAAAAAGTTGTACGGTT
TGCACAGTTTAAGATCAGGTGGTGGTTCCACAGCTGCAAATCTGGGTGTA
AAAGACAGATTGTTAATGAAACATGGAAGATGGAAATCTCATAACGTTAA
AAACAGGTATATATCCGAAAGTATTAAAAGTTTATTATATGTATCTAGGA
GTTTAGGTTTATGAATGTTTAAGTAACTTTTCATAATAAAGACTCACGAT
AATTGTCTCATGCTCTTAGTCTACAGGCTTTGGTACGGCTCCTACTACAT
GAAAGATATCAATCTGTCTCGAAATCGAGAT
Run BLAST on NCBI

protein sequence of TCONS_00043955-protein

>TCONS_00043955-protein ID=TCONS_00043955-protein|Name=TCONS_00043955-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
XRFSECQNLRRSDLKFFTTHAMIFIEKSKTDFYRHGHWLCLARLKSHFCP
VRELESYRTKIKENSNSNNFIFRALTSKHKLRKANKAVSYSTIRNEFKAI
VNVLGFDKRLXH
Run BLAST on NCBI

transcript from alignment at sc0004764:5..735

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043955 ID=TCONS_00043955|Name=TCONS_00043955|organism=Clytia hemisphaerica|type=transcript|length=731bp|location=Sequence derived from alignment at sc0004764:5..735 (Clytia hemisphaerica)
ATCTCGATTTCGAGACAGATTGATATCTTTCATGTAGTAGGAGCCGTACC
AAAGCCTGTAGACTAAGAGCATGAGACAATTATCGTGAGTCTTTATTATG
AAAAGTTACTTAAACATTCATAAACCTAAACTCCTAGATACATATAATAA
ACTTTTAATACTTTCGGATATATACCTGTTTTTAACGTTATGAGATTTCC
ATCTTCCATGTTTCATTAACAATCTGTCTTTTACACCCAGATTTGCAGCT
GTGGAACCACCACCTGATCTTAAACTGTGCAAACCGTACAACTTTTTATC
AAAACCCAACACATTTACGATAGCTTTAAATTCGTTACGAATTGTTGAAT
ACGACACTGCTTTGTTAGCCTTTCgaagtttatgttttgatgttaATGCN
ACAACCTTTTATCAAAACCCAACACATTTACGATAGCTTTAAATTCGTTA
CGAATTGTTGAATACGACACTGCTTTGTTAGCCTTTCgaagtttatgttt
tgatgttaATGCTCTGAAAATAAAGTTGTTAGAGTTAGAATTTTCTTTTA
TCTTCGTACGGTACGACTCTAATTCTCTCACTGGACAAAAATGTGATTTT
AACCTAGCGAGGCACAACCAATGCCCATGTCTGTAAAAGTCCGTCTTACT
TTTCTCGATAAAAATCATGGCGTGAGTCGTAAAAAACTTCAAATCCGATC
TTCTCAAGTTCTGACATTCCGAAAATCTCNN

Coding sequence (CDS) from alignment at sc0004764:5..735

>TCONS_00043955 ID=TCONS_00043955|Name=TCONS_00043955|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at sc0004764:5..735 (Clytia hemisphaerica)
ttaATGCNACAACCTTTTATCAAAACCCAACACATTTACGATAGCTTTAA
ATTCGTTACGAATTGTTGAATACGACACTGCTTTGTTAGCCTTTCgaagt
ttatgttttgatgttaATGCTCTGAAAATAAAGTTGTTAGAGTTAGAATT
TTCTTTTATCTTCGTACGGTACGACTCTAATTCTCTCACTGGACAAAAAT
GTGATTTTAACCTAGCGAGGCACAACCAATGCCCATGTCTGTAAAAGTCC
GTCTTACTTTTCTCGATAAAAATCATGGCGTGAGTCGTAAAAAACTTCAA
ATCCGATCTTCTCAAGTTCTGACATTCCGAAAATCTCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027617XLOC_027617Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043955-exon-sc0004764-1491911889:5..735TCONS_00043955-exon-sc0004764-1491911889:5..735Clytia hemisphaericaexon
TCONS_00043955-exon-sc0004764-1510915933:5..735TCONS_00043955-exon-sc0004764-1510915933:5..735Clytia hemisphaericaexon
TCONS_00043955-exon-sc0004764-1575043694:5..735TCONS_00043955-exon-sc0004764-1575043694:5..735Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043955-proteinTCONS_00043955-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004764supercontigsc0004764:5..735 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.7236	14.6466	10.856	6.57977	2.51778	2.3586	2.42153	2.134	1.14272	2.61471	1.04232	0.666361	1.3049	0.719961	0.889563	0.814404	0.768115	0.918491	0.32752	0.445102	0.941242	0.765219	5.97721	3.9608	0.440434	0.675015	1.36143	1.1866	5.52566	2.5823
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013762Integrase-like_cat
IPR011010DNA_brk_join_enz
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006310 DNA recombination
molecular_function GO:0003677 DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043955 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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