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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043935 ID=TCONS_00043935|Name=TCONS_00043935|organism=Clytia hemisphaerica|type=transcript|length=2051bp
cgacgagatatttccccgacattttatcaccctAAATTTCTAAAATCGGC
CTGAAGTCAGCAATCAGAAAAATGTTCTACCAAAAGAAAACCGCCCACAG
AAAGACTGAAATAATGTAATTTTATTTCGTTACATTACGTATTGGTAAAC
TATTATTTGTCCTAAAAGAAATTCTCTCAATATGGCTAAATCACCAGTCA
TACTTACTGCTAACTTAGAAGATCAAAAAAATAANGGTAAACTATTATTT
GTCCTAAAAGAAATTCTCTCAATATGGCTAAATCACCAGTCATACTTACT
GCTAACTTAGaagatcaaaaaaataaaagcaaaccTTTAGGCATCTTGAA
TTAGAAAAACTGGGGACAAATTTGAGATGTAATCTGAGCCATATAGACTG
ATTTTATTCAAAGCAACAAAAGAAAGGATATCGCTACTGTTTTAAGAAAA
GGCTAGCTACCAAAAAACTCATCTTGAGATCTTCCAAAAATTgactaaat
aaaaaatagacAACAGGCTTGGAGACCAATAAGtacgggacaagctggag
tttttacaagcccttatttgatttggttggtcgttaagatgtaataaaag
aatctcattactttttctaaagaacgcgtcatctctatcactttaaatga
ccaNTAAAAGaatctcattactttttctaaagaacgcgtcatctctatca
ctttaaatgaccaagaatcttgtaaaaactccagctcatcccataAGTAC
TAAGCAAATTAAGCCATCCTAAGACACAAACAGAATAAAACAAGTCAACC
ACCAAACCTTGCTCATAAAACTTTTGAGCCTTCTCTGTTGAAAAAGTCTG
TACTCCTTCAAAAACATATGCTTTNAATAAAACAAGTCAACCACCAAACC
TTGCTCATAAAACTTTTGAGCCTTCTCTGTTGAAAAAGTCTGTACTCCTT
CAAAAACATATGcttttgtttcaaatatttcagtgCAAAAtcatatcttt
tttaaatatgtTGTTTCAAGGTCAGGTAGCTTGCTCCCAGTTTGTTTTGA
CTGAGGAAAAAATCTATACAAATATACAAACATAATCAGCTACCGTGATT
GATaaagttttcagattttaagaatttaggagaatttgttgaattttagg
agttttgacttattttaggaattttaggAGGATTGGGATGCCTGCTATAA
GCTATCACCTTTTACAACGAGCTTTCAAGGTTTGGGATCAAAGGGTCGAT
CTCGCTTGCATTCTTGTCAGAGATGTGGATCCTTAGAGGGGGGAATAATC
GAGATCAAAAAGGAACATATAGCAATAAGGCTTTATCTTCGAATATTACT
GATTGGAAGGTACAGGACTGTATGGATGTATGGAAACGGGTCAACACCgc
ttcaaaaacacaaaaaactcATCGTCAATCTCATATATCCACCAAACACT
TCCAAAGACTATCATCGTCTTGCCGCCAAACATAATTCTAAGTAGCTTTT
TTAAATATCACGGACGGGAAAGTCTCAGGAAGTAATTTCGCTGAAAACCA
GTATCCACATTCATCGCATCGCTAGGTTCTCACTTTTATTTAGTTCGATG
TTTTACTTATCCATTGAATAGCAACTATCGCTCCGTTCCATGAAATTGAA
CATCAATAATTGAAGATCAACGAGGATGCAAACATATTGAACCGATCAAA
TGAGGGTCGATAATCAAGAAGCAATGGACTTCAAATATTCCTCTTCTTCT
CGGTGCATTTTACTTGCCATGTGCATGTTGTAGGGTGTGGGACCATTCAA
CTGCTTATCGCAAATGTCACAGTAGTATAGTTTCTTGCTGCCAGGTGCGG
GCTTCACTTGGTTCTCCGTATATGCTAAGAAGAAAAGACCATTTACGAGA
AGTGTAAATACAATCGATTGGCTCTCATTTCTTTAGAAGACACCTAAGTT
TTAATAAGTAAATACACTACCCGCGTTGAAAAGATTGTTGTGAGTATTTT
CAATTATGCTGGTTGAGAAACACGTAAGTTCGGCAGATTTTTGACGCCTT
A Run BLAST on NCBI transcript from alignment at sc0004746:26..2076 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043935 ID=TCONS_00043935|Name=TCONS_00043935|organism=Clytia hemisphaerica|type=transcript|length=2051bp|location=Sequence derived from alignment at sc0004746:26..2076 (Clytia hemisphaerica)
TAAGGCGTCAAAAATCTGCCGAACTTACGTGTTTCTCAACCAGCATAATT
GAAAATACTCACAACAATCTTTTCAACGCGGGTAGTGTATTTACTTATTA
AAACTTAGGTGTCTTCTAAAGAAATGAGAGCCAATCGATTGTATTTACAC
TTCTCGTAAATGGTCTTTTCTTCTTAGCATATACGGAGAACCAAGTGAAG
CCCGCACCTGGCAGCAAGAAACTATACTACTGTGACATTTGCGATAAGCA
GTTGAATGGTCCCACACCCTACAACATGCACATGGCAAGTAAAATGCACC
GAGAAGAAGAGGAATATTTGAAGTCCATTGCTTCTTGATTATCGACCCTC
ATTTGATCGGTTCAATATGTTTGCATCCTCGTTGATCTTCAATTATTGAT
GTTCAATTTCATGGAACGGAGCGATAGTTGCTATTCAATGGATAAGTAAA
ACATCGAACTAAATAAAAGTGAGAACCTAGCGATGCGATGAATGTGGATA
CTGGTTTTCAGCGAAATTACTTCCTGAGACTTTCCCGTCCGTGATATTTA
AAAAAGCTACTTAGAATTATGTTTGGCGGCAAGACGATGATAGTCTTTGG
AAGTGTTTGGTGGATATATGAGATTGACGATgagttttttgtgtttttga
agcGGTGTTGACCCGTTTCCATACATCCATACAGTCCTGTACCTTCCAAT
CAGTAATATTCGAAGATAAAGCCTTATTGCTATATGTTCCTTTTTGATCT
CGATTATTCCCCCCTCTAAGGATCCACATCTCTGACAAGAATGCAAGCGA
GATCGACCCTTTGATCCCAAACCTTGAAAGCTCGTTGTAAAAGGTGATAG
CTTATAGCAGGCATCCCAATCCTcctaaaattcctaaaataagtcaaaac
tcctaaaattcaacaaattctcctaaattcttaaaatctgaaaactttAT
CAATCACGGTAGCTGATTATGTTTGTATATTTGTATAGATTTTTTCCTCA
GTCAAAACAAACTGGGAGCAAGCTACCTGACCTTGAAACAacatatttaa
aaaagatatgaTTTTGcactgaaatatttgaaacaaaagCATATGTTTTT
GAAGGAGTACAGACTTTTTCAACAGAGAAGGCTCAAAAGTTTTATGAGCA
AGGTTTGGTGGTTGACTTGTTTTATTNAAAGCATATGTTTTTGAAGGAGT
ACAGACTTTTTCAACAGAGAAGGCTCAAAAGTTTTATGAGCAAGGTTTGG
TGGTTGACTTGTTTTATTCTGTTTGTGTCTTAGGATGGCTTAATTTGCTT
AGTACTtatgggatgagctggagtttttacaagattcttggtcatttaaa
gtgatagagatgacgcgttctttagaaaaagtaatgagattCTTTTANtg
gtcatttaaagtgatagagatgacgcgttctttagaaaaagtaatgagat
tcttttattacatcttaacgaccaaccaaatcaaataagggcttgtaaaa
actccagcttgtcccgtaCTTATTGGTCTCCAAGCCTGTTgtctattttt
tatttagtcAATTTTTGGAAGATCTCAAGATGAGTTTTTTGGTAGCTAGC
CTTTTCTTAAAACAGTAGCGATATCCTTTCTTTTGTTGCTTTGAATAAAA
TCAGTCTATATGGCTCAGATTACATCTCAAATTTGTCCCCAGTTTTTCTA
ATTCAAGATGCCTAAAggtttgcttttatttttttgatcttCTAAGTTAG
CAGTAAGTATGACTGGTGATTTAGCCATATTGAGAGAATTTCTTTTAGGA
CAAATAATAGTTTACCNTTATTTTTTTGATCTTCTAAGTTAGCAGTAAGT
ATGACTGGTGATTTAGCCATATTGAGAGAATTTCTTTTAGGACAAATAAT
AGTTTACCAATACGTAATGTAACGAAATAAAATTACATTATTTCAGTCTT
TCTGTGGGCGGTTTTCTTTTGGTAGAACATTTTTCTGATTGCTGACTTCA
GGCCGATTTTAGAAATTTagggtgataaaatgtcggggaaatatctcgtc
g
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043935-exon-sc0004746-1491911889:26..2076 | TCONS_00043935-exon-sc0004746-1491911889:26..2076 | Clytia hemisphaerica | exon |
| TCONS_00043935-exon-sc0004746-1510915933:26..2076 | TCONS_00043935-exon-sc0004746-1510915933:26..2076 | Clytia hemisphaerica | exon |
| TCONS_00043935-exon-sc0004746-1575043694:26..2076 | TCONS_00043935-exon-sc0004746-1575043694:26..2076 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004746 | supercontig | sc0004746:26..2076 . |
Blast
The following BLAST results are available for this feature:
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