TCONS_00043912 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043912
Unique NameTCONS_00043912
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length478

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043912 ID=TCONS_00043912|Name=TCONS_00043912|organism=Clytia hemisphaerica|type=transcript|length=478bp
CCGCTCTTCATCCTTCACGACCAAACTAAAGAAAATATCCGAATTGCGCC
CAAAATACCCGTTCAATTTCAAACCATATAAAATTCCTGTGATAAATTTA
TCATCAATAGAACTAACTGAGAAAGAACTGATGCAGTTAAGTTATGGGTT
AGATCAGAGTTTCATCGATAAAAATAAACATGTGAAAAAGAATTTAGCTG
CAAACCTCGAATCCTTAGCACAATCGACCGATAAAGACGTACCGAACGAA
CAAAAAGAAGAGTTTCATGAACTTTTACGAGCGTACTGTGATATGTTCAC
GAAAAATATATATGATTCAAAAGATTACACTTACACTAATTTAAAGAGAC
TCATCAATAATGATAGTATTGTTATCATACCAGGAGACAAAGACTCGTCC
GTTGTGGTTATGAACAAAGTCGACTATGTAAATAAACTACAGGCTATGAT
AAATGAAGGTATTGATCAAGGAGTTTAC
Run BLAST on NCBI

protein sequence of TCONS_00043912-protein

>TCONS_00043912-protein ID=TCONS_00043912-protein|Name=TCONS_00043912-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
RSSSFTTKLKKISELRPKYPFNFKPYKIPVINLSSIELTEKELMQLSYGL
DQSFIDKNKHVKKNLAANLESLAQSTDKDVPNEQKEEFHELLRAYCDMFT
KNIYDSKDYTYTNLKRLINNDSIVIIPGDKDSSVVVMNKVDYVNKLQAMI
NEGIDQGVY
Run BLAST on NCBI

transcript from alignment at sc0004723:12..489

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043912 ID=TCONS_00043912|Name=TCONS_00043912|organism=Clytia hemisphaerica|type=transcript|length=478bp|location=Sequence derived from alignment at sc0004723:12..489 (Clytia hemisphaerica)
GTAAACTCCTTGATCAATACCTTCATTTATCATAGCCTGTAGTTTATTTA
CATAGTCGACTTTGTTCATAACCACAACGGACGAGTCTTTGTCTCCTGGT
ATGATAACAATACTATCATTATTGATGAGTCTCTTTAAATTAGTGTAAGT
GTAATCTTTTGAATCATATATATTTTTCGTGAACATATCACAGTACGCTC
GTAAAAGTTCATGAAACTCTTCTTTTTGTTCGTTCGGTACGTCTTTATCG
GTCGATTGTGCTAAGGATTCGAGGTTTGCAGCTAAATTCTTTTTCACATG
TTTATTTTTATCGATGAAACTCTGATCTAACCCATAACTTAACTGCATCA
GTTCTTTCTCAGTTAGTTCTATTGATGATAAATTTATCACAGGAATTTTA
TATGGTTTGAAATTGAACGGGTATTTTGGGCGCAATTCGGATATTTTCTT
TAGTTTGGTCGTGAAGGATGAAGAGCGG

Coding sequence (CDS) from alignment at sc0004723:12..489

>TCONS_00043912 ID=TCONS_00043912|Name=TCONS_00043912|organism=Clytia hemisphaerica|type=CDS|length=477bp|location=Sequence derived from alignment at sc0004723:12..489 (Clytia hemisphaerica)
GTAAACTCCTTGATCAATACCTTCATTTATCATAGCCTGTAGTTTATTTA
CATAGTCGACTTTGTTCATAACCACAACGGACGAGTCTTTGTCTCCTGGT
ATGATAACAATACTATCATTATTGATGAGTCTCTTTAAATTAGTGTAAGT
GTAATCTTTTGAATCATATATATTTTTCGTGAACATATCACAGTACGCTC
GTAAAAGTTCATGAAACTCTTCTTTTTGTTCGTTCGGTACGTCTTTATCG
GTCGATTGTGCTAAGGATTCGAGGTTTGCAGCTAAATTCTTTTTCACATG
TTTATTTTTATCGATGAAACTCTGATCTAACCCATAACTTAACTGCATCA
GTTCTTTCTCAGTTAGTTCTATTGATGATAAATTTATCACAGGAATTTTA
TATGGTTTGAAATTGAACGGGTATTTTGGGCGCAATTCGGATATTTTCTT
TAGTTTGGTCGTGAAGGATGAAGAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027579XLOC_027579Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043912-exon-sc0004723-1491911889:12..489TCONS_00043912-exon-sc0004723-1491911889:12..489Clytia hemisphaericaexon
TCONS_00043912-exon-sc0004723-1510915933:12..489TCONS_00043912-exon-sc0004723-1510915933:12..489Clytia hemisphaericaexon
TCONS_00043912-exon-sc0004723-1575043694:12..489TCONS_00043912-exon-sc0004723-1575043694:12..489Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043912-proteinTCONS_00043912-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004723supercontigsc0004723:12..489 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.395663	0.514444	0.597319	2.04534	1.06715	0.702728	1.52606	1.58742	0.222278	1.10131	0	0.702691	0	0.182184	0.22467	0.482211	0	0	0	0.146709	0	0	0.15122	0	0.424805	0.252752	0	0.193002	0.146385	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043912 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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