|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043895 ID=TCONS_00043895|Name=TCONS_00043895|organism=Clytia hemisphaerica|type=transcript|length=1280bp
CCGCCATCTTGATTTTAGGGTTCCAATTTAGTACCCAGTCTGTTGTCCAA
TTTATCATttcctgataaaattttaaaggaGACTGAGTCGGGAAcaggct
accattttgaattttctcgaTGTTTTCAATACTTTCCATCtaaatcattt
gaaaatttattggGTAATCGAGACCACACGAGGTCAAAACATTCCAAAAC
AACATGTCTTCCGAACTGGAATAAAAGCTGACAAGAAATTGGTAAAACTT
GGCCAAAACATTGCTTGAAATGGCTAGTTCCAGACGCAGAAGTGCTAGGA
TCCAGCAGAAAATTGTCGACTCAGAGACCAGCGATATAAATACCACAGAT
GACGAGTCTACATCACTagtttcagataaaaaaagaacCCCACGAAGAAA
GTCAAAATCAACTCCTTCGAAAAGCACCAAAAATATATCGCATCAAGTTG
AAAACATCCCACCTACGGTTATCGAGCTAGCTGAAGAAGAAACCGAGTCA
ACCGAAATTGTTGAGGAGATAGAAGAGTCTAAGTCTACGAAAAAGACTAG
AAGAAGGAAAAAGATTAACTGTGTTTCAGATGATCCCGCCCTAGAAGAAT
CCAAAGACGTAAGTCCTATCCAGTCAATCACAATAGACtcagaagaaagt
gaaaaagatAAACCATTAGAAAAACTTGGAGAAAGGAATACTgaaaatca
agaatttttaaaacCCTTGCAATCTGAAGAGACTAACTTTATTAAACTTG
TTTCGTCATCTGATGAGGAAAATAAAGATGACAACGATGAAGATACTTTG
GGTGAGCAGAAGAATAATTCCATAAGTGATAATGAAGTTGTGACAGAAGC
TGCTAATgtgccagaaaatgaaaaatctgaTGAAATCATAAAGGAAGACA
TCCAAGTCAAAAGGATACCAAGATTCAAAGTTGACTTGAAGAAATATGAA
TCCAACTTTCAATCCTCTAACCCATTATCAAAGCTGGGCTGGGAATTGAA
AAATAGTGCACCTTTCAGAGACCATTTGAGACGAATGAAAAAAAAGGAGC
CTGAAGTGAATGATGTCTGTGGTTTGCACGGTGTGCAGCTTTCTGAGACA
GAGAAAGAGCCTAAGATTGAATCTAAGTTAAAATTACAAAGTctgaaatc
aaatttaaaatcatcAGCTGATaaagaagttgaaaaattaatgaaacaaT
CTGCTTTGCCTGTAGATATGGAGAAAGAAAAGAACTGTCCAGTCTTCAAC
AAATCCAAACTTGCAAAAAATAAGGAAANN Run BLAST on NCBI protein sequence of TCONS_00043895-protein >TCONS_00043895-protein ID=TCONS_00043895-protein|Name=TCONS_00043895-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp
MASSRRRSARIQQKIVDSETSDINTTDDESTSLVSDKKRTPRRKSKSTPS
KSTKNISHQVENIPPTVIELAEEETESTEIVEEIEESKSTKKTRRRKKIN
CVSDDPALEESKDVSPIQSITIDSEESEKDKPLEKLGERNTENQEFLKPL
QSEETNFIKLVSSSDEENKDDNDEDTLGEQKNNSISDNEVVTEAANVPEN
EKSDEIIKEDIQVKRIPRFKVDLKKYESNFQSSNPLSKLGWELKNSAPFR
DHLRRMKKKEPEVNDVCGLHGVQLSETEKEPKIESKLKLQSLKSNLKSSA
DKEVEKLMKQSALPVDMEKEKNCPVFNKSKLAKNKEX Run BLAST on NCBI transcript from alignment at sc0004706:3502..4781 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043895 ID=TCONS_00043895|Name=TCONS_00043895|organism=Clytia hemisphaerica|type=transcript|length=1280bp|location=Sequence derived from alignment at sc0004706:3502..4781 (Clytia hemisphaerica)
NNTTTCCTTATTTTTTGCAAGTTTGGATTTGTTGAAGACTGGACAGTTCT
TTTCTTTCTCCATATCTACAGGCAAAGCAGAttgtttcattaatttttca
acttctttATCAGCTgatgattttaaatttgatttcagACTTTGTAATTT
TAACTTAGATTCAATCTTAGGCTCTTTCTCTGTCTCAGAAAGCTGCACAC
CGTGCAAACCACAGACATCATTCACTTCAGGCTCCTTTTTTTTCATTCGT
CTCAAATGGTCTCTGAAAGGTGCACTATTTTTCAATTCCCAGCCCAGCTT
TGATAATGGGTTAGAGGATTGAAAGTTGGATTCATATTTCTTCAAGTCAA
CTTTGAATCTTGGTATCCTTTTGACTTGGATGTCTTCCTTTATGATTTCA
tcagatttttcattttctggcacATTAGCAGCTTCTGTCACAACTTCATT
ATCACTTATGGAATTATTCTTCTGCTCACCCAAAGTATCTTCATCGTTGT
CATCTTTATTTTCCTCATCAGATGACGAAACAAGTTTAATAAAGTTAGTC
TCTTCAGATTGCAAGGgttttaaaaattcttgattttcAGTATTCCTTTC
TCCAAGTTTTTCTAATGGTTTatctttttcactttcttctgaGTCTATTG
TGATTGACTGGATAGGACTTACGTCTTTGGATTCTTCTAGGGCGGGATCA
TCTGAAACACAGTTAATCTTTTTCCTTCTTCTAGTCTTTTTCGTAGACTT
AGACTCTTCTATCTCCTCAACAATTTCGGTTGACTCGGTTTCTTCTTCAG
CTAGCTCGATAACCGTAGGTGGGATGTTTTCAACTTGATGCGATATATTT
TTGGTGCTTTTCGAAGGAGTTGATTTTGACTTTCTTCGTGGGgttctttt
tttatctgaaactAGTGATGTAGACTCGTCATCTGTGGTATTTATATCGC
TGGTCTCTGAGTCGACAATTTTCTGCTGGATCCTAGCACTTCTGCGTCTG
GAACTAGCCATTTCAAGCAATGTTTTGGCCAAGTTTTACCAATTTCTTGT
CAGCTTTTATTCCAGTTCGGAAGACATGTTGTTTTGGAATGTTTTGACCT
CGTGTGGTCTCGATTACccaataaattttcaaatgatttaGATGGAAAGT
ATTGAAAACAtcgagaaaattcaaaatggtagcctgTTCCCGACTCAGTC
tcctttaaaattttatcaggaaATGATAAATTGGACAACAGACTGGGTAC
TAAATTGGAACCCTAAAATCAAGATGGCGG Coding sequence (CDS) from alignment at sc0004706:3502..4781 >TCONS_00043895 ID=TCONS_00043895|Name=TCONS_00043895|organism=Clytia hemisphaerica|type=CDS|length=1011bp|location=Sequence derived from alignment at sc0004706:3502..4781 (Clytia hemisphaerica)
NNTTTCCTTATTTTTTGCAAGTTTGGATTTGTTGAAGACTGGACAGTTCT
TTTCTTTCTCCATATCTACAGGCAAAGCAGAttgtttcattaatttttca
acttctttATCAGCTgatgattttaaatttgatttcagACTTTGTAATTT
TAACTTAGATTCAATCTTAGGCTCTTTCTCTGTCTCAGAAAGCTGCACAC
CGTGCAAACCACAGACATCATTCACTTCAGGCTCCTTTTTTTTCATTCGT
CTCAAATGGTCTCTGAAAGGTGCACTATTTTTCAATTCCCAGCCCAGCTT
TGATAATGGGTTAGAGGATTGAAAGTTGGATTCATATTTCTTCAAGTCAA
CTTTGAATCTTGGTATCCTTTTGACTTGGATGTCTTCCTTTATGATTTCA
tcagatttttcattttctggcacATTAGCAGCTTCTGTCACAACTTCATT
ATCACTTATGGAATTATTCTTCTGCTCACCCAAAGTATCTTCATCGTTGT
CATCTTTATTTTCCTCATCAGATGACGAAACAAGTTTAATAAAGTTAGTC
TCTTCAGATTGCAAGGgttttaaaaattcttgattttcAGTATTCCTTTC
TCCAAGTTTTTCTAATGGTTTatctttttcactttcttctgaGTCTATTG
TGATTGACTGGATAGGACTTACGTCTTTGGATTCTTCTAGGGCGGGATCA
TCTGAAACACAGTTAATCTTTTTCCTTCTTCTAGTCTTTTTCGTAGACTT
AGACTCTTCTATCTCCTCAACAATTTCGGTTGACTCGGTTTCTTCTTCAG
CTAGCTCGATAACCGTAGGTGGGATGTTTTCAACTTGATGCGATATATTT
TTGGTGCTTTTCGAAGGAGTTGATTTTGACTTTCTTCGTGGGgttctttt
tttatctgaaactAGTGATGTAGACTCGTCATCTGTGGTATTTATATCGC
TGGTCTCTGAGTCGACAATTTTCTGCTGGATCCTAGCACTTCTGCGTCTG
GAACTAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043895-exon-sc0004706-1491911889:3502..4781 | TCONS_00043895-exon-sc0004706-1491911889:3502..4781 | Clytia hemisphaerica | exon |
| TCONS_00043895-exon-sc0004706-1510915933:3502..4781 | TCONS_00043895-exon-sc0004706-1510915933:3502..4781 | Clytia hemisphaerica | exon |
| TCONS_00043895-exon-sc0004706-1575043694:3502..4781 | TCONS_00043895-exon-sc0004706-1575043694:3502..4781 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004706 | supercontig | sc0004706:3502..4781 . |
Blast
The following BLAST results are available for this feature:
|
