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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043884 ID=TCONS_00043884|Name=TCONS_00043884|organism=Clytia hemisphaerica|type=transcript|length=1572bp
CAGAAACCAGTGTATATAAACTGGCTAATTTCATTCAAGGTGAAGACAAA
CAGTAGAATTGtaagaaaataataatataaGTGTTTTGTACAGTTCTTAa
tgaatttcatttcattttcatagaaaacaaaaaataaaagtgacaaagaa
aaaaaagatcgaATAAACAATAAAATGGAGAAGAATGGAAACAATCACAG
CGAAACAAGAAGAAATCCATCAGGGAATGGTGCCACAAACAGAGAATATG
TCTTATTTGCTGGTAACCCAGGAAGTGGCAAAAGCACAATCTTGAACTGC
TTGATGACATCAAGAAGTCCAGACCCTCTTCATGAAAGCCAGAGATTCAA
GTCCGGTGTAGCTATTGCATCAGGGATGACGTACCAACTGGACAAGAAAG
AAGTTTGTGGAGTTACTTACATGGATACTCCAGGTCTGGATGACGTCAAT
AAACGAAAACAAGCTGCTGAAGCCATCACCAAGGCTTTGAGAGAGAATGG
AAAATATCAAGTCATTTTTGTGGTCACTTTGGAAGCTGGTCGAGTGAAGC
CGGCAGATGTGGCAACCATTCAATTGATCCTTGAAAGCGCAAAAGAGATA
ACTCATTATGGCGTCATCTTCAACAAGCTTAGCAAGCCAGTAATGAAAAA
GCTGACGGCCAAAGATGGCAAGATGGCGTTGATCACTCAAGTGTCTGTTC
AACCACAAAAGGGAAAACCGAAGCCGCTAccatttcctttgtttttgaag
aaagatGGTGAACTTGAAGATGAGGATGATGCAGTTGCTGAATTCCCTGA
ACTGGATACTTTCTTCGGTGGGTTGCCTTACATTGACATCAAGAAAGAGA
ACGTCCATGACATCCCAACTGAAAGTTTTGAAGCTATGAAAAGCAAGCTT
GAAGATGAGCTTGACCATATGAAGAAAGATCGAGAGTCCATGAAACGACA
AATGGACGAAGATCGAAAAAATTTCAGACGAACACTTGAAGAAATGAATA
GAAAAGAGCAAATGGAGAGAGAGAGATTCGAAAAGGAGCGGGAAAGATCG
GAGAAGAATCATGACAGTCAAATGGATATGATGAAAACAcaaattaaaga
aacaaaagaacaaGCAGCCAAGAGTGAGGTAGCATCGCAGAAAAGCCATG
AAGCTCAGATGAAGAAAGATCAACTTGATCATGCGTTGGCAATGAAACAA
TTGGACCAGGCACATCAAAGAAGAATGAAACAAATCGATAACAACAAAAG
AAGAGGATTCTTCAGCTTTCTATTTGGCTGATATTTCTTTCACATTCCTG
TGGACTAACAAGAAAAACTATTTTACAGTTTATATTTACTTCATACGAAT
ACCATTTTCTTACAATAAAATGTCAAAAGTATACTCACCATTGATTTCTA
AAGCCctaagggctagatggcgtgcttcggctaaaaagtgtgccgtggtt
aggtagaaaatcctacctaggtcacgtgacattacatgagaatttcagcg
cttgaccaatcagaagcttcgcaggttttcgaaaacaatagcaacaatat
tttttccgatattcaatttttt Run BLAST on NCBI protein sequence of TCONS_00043884-protein >TCONS_00043884-protein ID=TCONS_00043884-protein|Name=TCONS_00043884-protein|organism=Clytia hemisphaerica|type=polypeptide|length=368bp
MEKNGNNHSETRRNPSGNGATNREYVLFAGNPGSGKSTILNCLMTSRSPD
PLHESQRFKSGVAIASGMTYQLDKKEVCGVTYMDTPGLDDVNKRKQAAEA
ITKALRENGKYQVIFVVTLEAGRVKPADVATIQLILESAKEITHYGVIFN
KLSKPVMKKLTAKDGKMALITQVSVQPQKGKPKPLPFPLFLKKDGELEDE
DDAVAEFPELDTFFGGLPYIDIKKENVHDIPTESFEAMKSKLEDELDHMK
KDRESMKRQMDEDRKNFRRTLEEMNRKEQMERERFEKERERSEKNHDSQM
DMMKTQIKETKEQAAKSEVASQKSHEAQMKKDQLDHALAMKQLDQAHQRR
MKQIDNNKRRGFFSFLFG Run BLAST on NCBI transcript from alignment at sc0004698:3555..5624- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043884 ID=TCONS_00043884|Name=TCONS_00043884|organism=Clytia hemisphaerica|type=transcript|length=2070bp|location=Sequence derived from alignment at sc0004698:3555..5624- (Clytia hemisphaerica)
CAGAAACCAGTGTATATAAACTGGCTAATTTCATTCAAGGTGAAGACAAA
CAGTAGAATTGTAAGAAAATAATAATATAAGTGTTTTGTACAGTTCTTAA
TGAATTTCATTTCATTTTCATAGAAAACAAAAAATAAAAGTGACAAAGAA
AAAAAAGATCGAATAAACAATAAAATGGAGAAGAATGGAAACAATCACAG
CGAAACAAGAAGAAATCCATCAGGTATATAAATCAATTGTTCATTCATTT
TCCTTTATAAACTAGAAAATAAGCCCTAAGACTAAGAATATGAATTCGTT
CTTCGTACATCATACTCCCGAGCTTATTCGGTATTTGTAGCGGCCGTAGC
ATGAAGGTAAGCTACGGTGGGCAATGTTGTGGGTTCAATCCTCAACTGGT
CATATCAAGACCTTAAAATGCTACTTGGTGCCTCTCTACTTGATACTCAG
AAATTAAAGAAAAGGGTCAAGGGTGAGAGGAGAAATCTAGGGAAAGGAGA
GGCGACAACAAGAGACAAGGGAGCCTACGGGTCACCCTCCACTGCAAAAC
TTACTTACTAGTAGCTAACAGCTGCAATTCAGTATAAATTCTGTTTTTAT
AATGAACACGTTTGAAAGAACAAAATTCAGTGCTTCGGACTATTTCCCCA
AAACCTTCTTCAACACAAAGGTAATAAATCTGGAGACATGCAAACACTCT
TAAGCAATGCCTTTTCTTTAGGGAATGGTGCCACAAACAGAGAATATGTC
TTATTTGCTGGTAACCCAGGAAGTGGCAAAAGCACAATCTTGAACTGCTT
GATGACATCAAGAAGTCCAGACCCTCTTCATGAAAGCCAGAGATTCAAGT
CCGGTGTAGCTATTGCATCAGGGATGACGTACCAACTGGACAAGAAAGAA
GTTTGTGGAGTTACTTACATGGATACTCCAGGTCTGGATGACGTCAATAA
ACGAAAACAAGCTGCTGAAGCCATCACCAAGGCTTTGAGAGAGAATGGAA
AATATCAAGTCATTTTTGTGGTCACTTTGGAAGCTGGTCGAGTGAAGCCG
GCAGATGTGGCAACCATTCAATTGATCCTTGAAAGCGCAAAAGAGATAAC
TCATTATGGCGTCATCTTCAACAAGCTTAGCAAGCCAGTAATGAAAAAGC
TGACGGCCAAAGATGGCAAGATGGCGTTGATCACTCAAGTGTCTGTTCAA
CCACAAAAGGGAAAACCGAAGCCGCTACCATTTCCTTTGTTTTTGAAGAA
AGATGGTGAACTTGAAGATGAGGATGATGCAGTTGCTGAATTCCCTGAAC
TGGATACTTTCTTCGGTGGGTTGCCTTACATTGACATCAAGAAAGAGAAC
GTCCATGACATCCCAACTGAAAGTTTTGAAGCTATGAAAAGCAAGCTTGA
AGATGAGCTTGACCATATGAAGAAAGATCGAGAGTCCATGAAACGACAAA
TGGACGAAGATCGAAAAAATTTCAGACGAACACTTGAAGAAATGAATAGA
AAAGAGCAAATGGAGAGAGAGAGATTCGAAAAGGAGCGGGAAAGATCGGA
GAAGAATCATGACAGTCAAATGGATATGATGAAAACACAAATTAAAGAAA
CAAAAGAACAAGCAGCCAAGAGTGAGGTAGCATCGCAGAAAAGCCATGAA
GCTCAGATGAAGAAAGATCAACTTGATCATGCGTTGGCAATGAAACAATT
GGACCAGGCACATCAAAGAAGAATGAAACAAATCGATAACAACAAAAGAA
GAGGATTCTTCAGCTTTCTATTTGGCTGATATTTCTTTCACATTCCTGTG
GACTAACAAGAAAAACTATTTTACAGTTTATATTTACTTCATACGAATAC
CATTTTCTTACAATAAAATGTCAAAAGTATACTCACCATTGATTTCTAAA
GCCCTAAGGGCTAGATGGCGTGCTTCGGCTAAAAAGTGTGCCGTGGTTAG
GTAGAAAATCCTACCTAGGTCACGTGACATTACATGAGAATTTCAGCGCT
TGACCAATCAGAAGCTTCGCAGGTTTTCGAAAACAATAGCAACAATATTT
TTTCCGATATTCAATTTTTT Coding sequence (CDS) from alignment at sc0004698:3555..5624- >TCONS_00043884 ID=TCONS_00043884|Name=TCONS_00043884|organism=Clytia hemisphaerica|type=CDS|length=2214bp|location=Sequence derived from alignment at sc0004698:3555..5624- (Clytia hemisphaerica)
GGAATGGTGCCACAAACAGAGAATATGTCTTATTTGCTGGTAACCCAGGA
AGTGGCAAAAGCACAATCTTGAACTGCTTGATGACATCAAGAAGTCCAGA
CCCTCTTCATGAAAGCCAGAGATTCAAGTCCGGTGTAGCTATTGCATCAG
GGATGACGTACCAACTGGACAAGAAAGAAGTTTGTGGAGTTACTTACATG
GATACTCCAGGTCTGGATGACGTCAATAAACGAAAACAAGCTGCTGAAGC
CATCACCAAGGCTTTGAGAGAGAATGGAAAATATCAAGTCATTTTTGTGG
TCACTTTGGAAGCTGGTCGAGTGAAGCCGGCAGATGTGGCAACCATTCAA
TTGATCCTTGAAAGCGCAAAAGAGATAACTCATTATGGCGTCATCTTCAA
CAAGCTTAGCAAGCCAGTAATGAAAAAGCTGACGGCCAAAGATGGCAAGA
TGGCGTTGATCACTCAAGTGTCTGTTCAACCACAAAAGGGAAAACCGAAG
CCGCTACCATTTCCTTTGTTTTTGAAGAAAGATGGTGAACTTGAAGATGA
GGATGATGCAGTTGCTGAATTCCCTGAACTGGATACTTTCTTCGGTGGGT
TGCCTTACATTGACATCAAGAAAGAGAACGTCCATGACATCCCAACTGAA
AGTTTTGAAGCTATGAAAAGCAAGCTTGAAGATGAGCTTGACCATATGAA
GAAAGATCGAGAGTCCATGAAACGACAAATGGACGAAGATCGAAAAAATT
TCAGACGAACACTTGAAGAAATGAATAGAAAAGAGCAAATGGAGAGAGAG
AGATTCGAAAAGGAGCGGGAAAGATCGGAGAAGAATCATGACAGTCAAAT
GGATATGATGAAAACACAAATTAAAGAAACAAAAGAACAAGCAGCCAAGA
GTGAGGTAGCATCGCAGAAAAGCCATGAAGCTCAGATGAAGAAAGATCAA
CTTGATCATGCGTTGGCAATGAAACAATTGGACCAGGCACATCAAAGAAG
AATGAAACAAATCGATAACAACAAAAGAAGAGGATTCTTCAGCTTTCTAT
TTGGCTGAATGGAGAAGAATGGAAACAATCACAGCGAAACAAGAAGAAAT
CCATCAGGGAATGGTGCCACAAACAGAGAATATGTCTTATTTGCTGGTAA
CCCAGGAAGTGGCAAAAGCACAATCTTGAACTGCTTGATGACATCAAGAA
GTCCAGACCCTCTTCATGAAAGCCAGAGATTCAAGTCCGGTGTAGCTATT
GCATCAGGGATGACGTACCAACTGGACAAGAAAGAAGTTTGTGGAGTTAC
TTACATGGATACTCCAGGTCTGGATGACGTCAATAAACGAAAACAAGCTG
CTGAAGCCATCACCAAGGCTTTGAGAGAGAATGGAAAATATCAAGTCATT
TTTGTGGTCACTTTGGAAGCTGGTCGAGTGAAGCCGGCAGATGTGGCAAC
CATTCAATTGATCCTTGAAAGCGCAAAAGAGATAACTCATTATGGCGTCA
TCTTCAACAAGCTTAGCAAGCCAGTAATGAAAAAGCTGACGGCCAAAGAT
GGCAAGATGGCGTTGATCACTCAAGTGTCTGTTCAACCACAAAAGGGAAA
ACCGAAGCCGCTACCATTTCCTTTGTTTTTGAAGAAAGATGGTGAACTTG
AAGATGAGGATGATGCAGTTGCTGAATTCCCTGAACTGGATACTTTCTTC
GGTGGGTTGCCTTACATTGACATCAAGAAAGAGAACGTCCATGACATCCC
AACTGAAAGTTTTGAAGCTATGAAAAGCAAGCTTGAAGATGAGCTTGACC
ATATGAAGAAAGATCGAGAGTCCATGAAACGACAAATGGACGAAGATCGA
AAAAATTTCAGACGAACACTTGAAGAAATGAATAGAAAAGAGCAAATGGA
GAGAGAGAGATTCGAAAAGGAGCGGGAAAGATCGGAGAAGAATCATGACA
GTCAAATGGATATGATGAAAACACAAATTAAAGAAACAAAAGAACAAGCA
GCCAAGAGTGAGGTAGCATCGCAGAAAAGCCATGAAGCTCAGATGAAGAA
AGATCAACTTGATCATGCGTTGGCAATGAAACAATTGGACCAGGCACATC
AAAGAAGAATGAAACAAATCGATAACAACAAAAGAAGAGGATTCTTCAGC
TTTCTATTTGGCTGAATGGAGAAGAATGGAAACAATCACAGCGAAACAAG
AAGAAATCCATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043884-exon-sc0004698-1575043694:5402..5624 | TCONS_00043884-exon-sc0004698-1575043694:5402..5624 | Clytia hemisphaerica | exon |
| TCONS_00043884-exon-sc0004698-1575043694:3555..4903 | TCONS_00043884-exon-sc0004698-1575043694:3555..4903 | Clytia hemisphaerica | exon |
| TCONS_00043884-exon-sc0004698-1510915933:5402..5624 | TCONS_00043884-exon-sc0004698-1510915933:5402..5624 | Clytia hemisphaerica | exon |
| TCONS_00043884-exon-sc0004698-1510915933:3555..4903 | TCONS_00043884-exon-sc0004698-1510915933:3555..4903 | Clytia hemisphaerica | exon |
| TCONS_00043884-exon-sc0004698-1491911889:5402..5624 | TCONS_00043884-exon-sc0004698-1491911889:5402..5624 | Clytia hemisphaerica | exon |
| TCONS_00043884-exon-sc0004698-1491911889:3555..4903 | TCONS_00043884-exon-sc0004698-1491911889:3555..4903 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004698 | supercontig | sc0004698:3555..5624 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005525 | GTP binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005525 |
GTP binding |
Blast
The following BLAST results are available for this feature:
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