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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043882 ID=TCONS_00043882|Name=TCONS_00043882|organism=Clytia hemisphaerica|type=transcript|length=1169bpRun BLAST on NCBI protein sequence of TCONS_00043882-protein >TCONS_00043882-protein ID=TCONS_00043882-protein|Name=TCONS_00043882-protein|organism=Clytia hemisphaerica|type=polypeptide|length=389bp QVYWKGNTVAVLSFDKHQNDFRLKNSFSVETEIKDVIYTNFHLDEKSSELRun BLAST on NCBI transcript from alignment at sc0004696:1..5819- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00043882 ID=TCONS_00043882|Name=TCONS_00043882|organism=Clytia hemisphaerica|type=transcript|length=5819bp|location=Sequence derived from alignment at sc0004696:1..5819- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0004696:1..5819- >TCONS_00043882 ID=TCONS_00043882|Name=TCONS_00043882|organism=Clytia hemisphaerica|type=CDS|length=10503bp|location=Sequence derived from alignment at sc0004696:1..5819- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00043882 vs. Swiss-Prot (Human)
Match: APC1 (Anaphase-promoting complex subunit 1 OS=Homo sapiens GN=ANAPC1 PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.637e-24 Identity = 60/203 (29.56%), Postives = 108/203 (53.20%), Query Frame = 3
Query: 3 QVYWKGNTVAVLSFDKHQNDFRLKNSFSVETEIKDVIYTNFHLDE-------KSSELSQCLCVLEKSCLNIFTEVGKLFIASLPFKVKKIWGISKGICAEREANSKD---AEEEKGMPTLFSLAHPTEDFKPVVYH---YLDNRKPMYFTDATQHIVFTSPKDSLIMTYDSVLGLHSVWKARKALEQDFPEVL--SHQDSLPE 566
++Y GN V + S + +F+V++ ++ ++ +F + + S+E+ +C+C+L+ SC+N+ + GK +IASLPF+V +W G+ ER A+S + + +PT+FS+ HP ++ P+V + + Y D IVF + S++MTYD+V +HSVW R+ ++ VL S Q P+
Sbjct: 92 ELYVAGNMV-IWSKGSKSQALAVYKAFTVDSPVQQALWCDFIISQDKSEKAYSSNEVEKCICILQSSCINMHSIEGKDYIASLPFQVANVWPTKYGLLFERSASSHEVPPGSPREPLPTMFSMLHPLDEITPLVCKSGSLFGSSRVQYVVDHAMKIVFLNTDPSIVMTYDAVQNVHSVWTLRRVKSEEENVVLKFSEQGGTPQ 293 The following BLAST results are available for this feature:
BLAST of TCONS_00043882 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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