TCONS_00043880 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043880
Unique NameTCONS_00043880
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length361

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043880 ID=TCONS_00043880|Name=TCONS_00043880|organism=Clytia hemisphaerica|type=transcript|length=361bp
NNCAGTCCTGCTAATCCTGCCAGTCGTGCCAATCCTGCCAATCCTGCCAG
TCCTGCTAATCCTGCCAGTCGTGCCAATCCTGCCAGTCGTGCCAGTCCTG
CTAATCCTACCAGTCCTGCTAATCCTGCCAATCCTGCCAGTCGTGCCAAT
CCTGCTAATCCTGCCAGTCGTGCCAATCCTGCCAGTCGTGTCAGTCCTGC
CAATCCTGCCAGTCGTGCCAGTCAGTCACCCACACAATCGGCAAATCTTG
GCACCCCTGTGGACGCTAACAATAATGAAAATCAAGAAGGCTCGTCATCA
GCAGCTACTCCTGCCAGTCTTGACGCATCTGACGACGCTAGCAACAATGG
CAATAAAAGTA
Run BLAST on NCBI

protein sequence of TCONS_00043880-protein

>TCONS_00043880-protein ID=TCONS_00043880-protein|Name=TCONS_00043880-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
XSPANPASRANPANPASPANPASRANPASRASPANPTSPANPANPASRAN
PANPASRANPASRVSPANPASRASQSPTQSANLGTPVDANNNENQEGSSS
AATPASLDASDDASNNGNKS
Run BLAST on NCBI

transcript from alignment at sc0004694:2879..3389+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043880 ID=TCONS_00043880|Name=TCONS_00043880|organism=Clytia hemisphaerica|type=transcript|length=511bp|location=Sequence derived from alignment at sc0004694:2879..3389+ (Clytia hemisphaerica)
NNCAGTCCTGCTAATCCTGCCAGTCGTGCCAATCCTGCCAATCCTGCCAG
TCCTGCTAATCCTGCCAGTCGTGCCAATCCTGCCAGTCGTGCCAGTCCTG
CTAATCCTACCAGTCCTGCTAATCCTGCCAATCCTGCCAGTCGTGCCAAT
CCTGCTAATCCTGCCAGTCGTGCCAATCCTGCCAGTCGTGTCAGTCCTGC
CAATCCTGCCAGTCGTGCCAGTCAGTCACCCACACAATCGGCAAATCTTG
GCACCCCTGTGGACGCTAACAATAATGGTAATAAAAgtcggtgttttttt
tcaaaaacaaaatcttttctttCGCACTTTATCAGTTAAAAACTCTGTAT
CATTgagggaatttgaatttttgcttcaccATGCATATTCATTTTGATCA
AATAGAATTTCATCTTTAATGCCTTAGAAAATCAAGAAGGCTCGTCATCA
GCAGCTACTCCTGCCAGTCTTGACGCATCTGACGACGCTAGCAACAATGG
CAATAAAAGTA

Coding sequence (CDS) from alignment at sc0004694:2879..3389+

>TCONS_00043880 ID=TCONS_00043880|Name=TCONS_00043880|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at sc0004694:2879..3389+ (Clytia hemisphaerica)
NNCAGTCCTGCTAATCCTGCCAGTCGTGCCAATCCTGCCAATCCTGCCAG
TCCTGCTAATCCTGCCAGTCGTGCCAATCCTGCCAGTCGTGCCAGTCCTG
CTAATCCTACCAGTCCTGCTAATCCTGCCAATCCTGCCAGTCGTGCCAAT
CCTGCTAATCCTGCCAGTCGTGCCAATCCTGCCAGTCGTGTCAGTCCTGC
CAATCCTGCCAGTCGTGCCAGTCAGTCACCCACACAATCGGCAAATCTTG
GCACCCCTGTGGACGCTAACAATAATGAAAATCAAGAAGGCTCGTCATCA
GCAGCTACTCCTGCCAGTCTTGACGCATCTGACGACGCTAGCAACAATGG
CAATAAAAGTNNCAGTCCTGCTAATCCTGCCAGTCGTGCCAATCCTGCCA
ATCCTGCCAGTCCTGCTAATCCTGCCAGTCGTGCCAATCCTGCCAGTCGT
GCCAGTCCTGCTAATCCTACCAGTCCTGCTAATCCTGCCAATCCTGCCAG
TCGTGCCAATCCTGCTAATCCTGCCAGTCGTGCCAATCCTGCCAGTCGTG
TCAGTCCTGCCAATCCTGCCAGTCGTGCCAGTCAGTCACCCACACAATCG
GCAAATCTTGGCACCCCTGTGGACGCTAACAATAATGAAAATCAAGAAGG
CTCGTCATCAGCAGCTACTCCTGCCAGTCTTGACGCATCTGACGACGCTA
GCAACAATGGCAATAAAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027550XLOC_027550Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043880-proteinTCONS_00043880-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043880-exon-sc0004694-1491911889:2879..3155TCONS_00043880-exon-sc0004694-1491911889:2879..3155Clytia hemisphaericaexon
TCONS_00043880-exon-sc0004694-1510915933:2879..3155TCONS_00043880-exon-sc0004694-1510915933:2879..3155Clytia hemisphaericaexon
TCONS_00043880-exon-sc0004694-1575043694:2879..3155TCONS_00043880-exon-sc0004694-1575043694:2879..3155Clytia hemisphaericaexon
TCONS_00043880-exon-sc0004694-1491911889:3306..3389TCONS_00043880-exon-sc0004694-1491911889:3306..3389Clytia hemisphaericaexon
TCONS_00043880-exon-sc0004694-1510915933:3306..3389TCONS_00043880-exon-sc0004694-1510915933:3306..3389Clytia hemisphaericaexon
TCONS_00043880-exon-sc0004694-1575043694:3306..3389TCONS_00043880-exon-sc0004694-1575043694:3306..3389Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004694supercontigsc0004694:2879..3389 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.38841	1.54217	0.364883	0.318883	1.84934	4.27032	7.69681	1.28591	11.5253	11.2701	12.4918	13.3057	7.77574	8.42497	5.48591	9.73297	11.549	10.3457	7.81738	9.6518	19.0505	15.9928	5.07596	9.83507	0	0.800497	11.0347	4.70779	5.57708	4.18367
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043880 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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