TCONS_00043874 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043874
Unique NameTCONS_00043874
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length657

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043874 ID=TCONS_00043874|Name=TCONS_00043874|organism=Clytia hemisphaerica|type=transcript|length=657bp
ATGGGCCCTTGAAAACAATAGACAGACTGTACATATAAGCTATAGTGTCT
TTTTGCAACNCTGGCAACTAATTATGATAGTGTCAGATGCCAGGAATGTG
TAAATGCACCCACTGTGAGGCTTACTGTAAAGGTACAACGGATTCATTCC
AACGTTTCTTCATAAACCAGCGTAACTTATGAACTCACTATTTATGAAAA
AGCCGTTAAGGCGAAGTCTGTGGTTAAAAGCACGAAGTGTAGCAAATTTT
TAACAATACATTTCATCACCTAGGCATCTGCTAATCCTCTAGTGAATAGA
GTTTCttatagatatgtagatatataggaagcatatctatagaggtctgt
gattgAGATTTATTATAACCTAGCTAATTTTCAGATGAGGTCAAGGAGTG
GCCAAGCTGAAATAATTGTATAGTGGGCCCGCTATGAATTGAATAATTAG
AATTTGAGTCAAGAGGAATTATTGATGACGATTTACACTTACAAATTTGA
TTTCATCTTTTCTGACTTCTTAGCTGAAGTCTTCATAGCGGCGCTATAGA
GTCGTGATCTTCGTCTTTGCTAtaatataaattaaaattattacTTATTA
CCACCACCTCAGTTTGTATTAGCTGcaatttcaaagaaaacataccTCAG
TGGcaag
Run BLAST on NCBI

transcript from alignment at sc0004688:1153..1809

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043874 ID=TCONS_00043874|Name=TCONS_00043874|organism=Clytia hemisphaerica|type=transcript|length=657bp|location=Sequence derived from alignment at sc0004688:1153..1809 (Clytia hemisphaerica)
cttgCCACTGAggtatgttttctttgaaattgCAGCTAATACAAACTGAG
GTGGTGGTAATAAgtaataattttaatttatattaTAGCAAAGACGAAGA
TCACGACTCTATAGCGCCGCTATGAAGACTTCAGCTAAGAAGTCAGAAAA
GATGAAATCAAATTTGTAAGTGTAAATCGTCATCAATAATTCCTCTTGAC
TCAAATTCTAATTATTCAATTCATAGCGGGCCCACTATACAATTATTTCA
GCTTGGCCACTCCTTGACCTCATCTGAAAATTAGCTAGGTTATAATAAAT
CTcaatcacagacctctatagatatgcttcctatatatctacatatctat
aaGAAACTCTATTCACTAGAGGATTAGCAGATGCCTAGGTGATGAAATGT
ATTGTTAAAAATTTGCTACACTTCGTGCTTTTAACCACAGACTTCGCCTT
AACGGCTTTTTCATAAATAGTGAGTTCATAAGTTACGCTGGTTTATGAAG
AAACGTTGGAATGAATCCGTTGTACCTTTACAGTAAGCCTCACAGTGGGT
GCATTTACACATTCCTGGCATCTGACACTATCATAATTAGTTGCCAGNGT
TGCAAAAAGACACTATAGCTTATATGTACAGTCTGTCTATTGTTTTCAAG
GGCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027544XLOC_027544Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043874-exon-sc0004688-1491911889:1153..1809TCONS_00043874-exon-sc0004688-1491911889:1153..1809Clytia hemisphaericaexon
TCONS_00043874-exon-sc0004688-1510915933:1153..1809TCONS_00043874-exon-sc0004688-1510915933:1153..1809Clytia hemisphaericaexon
TCONS_00043874-exon-sc0004688-1575043694:1153..1809TCONS_00043874-exon-sc0004688-1575043694:1153..1809Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004688supercontigsc0004688:1153..1809 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.07597	0.789505	0	0	0	0	0.200199	0.247979	0.160463	0.105482	0.158003	0	0.0449675	0	0	0	0.252547	0.0880906	0	0.224079	0	0	0	0	0.108587	0	0.175793	0.179105
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043874 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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