TCONS_00043853 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043853
Unique NameTCONS_00043853
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length463

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043853 ID=TCONS_00043853|Name=TCONS_00043853|organism=Clytia hemisphaerica|type=transcript|length=463bp
attttaggaCGTTGAAGCGACACCGGATAAAGACGATAGCCGTTCCCTAC
ACATCGTCATTCAACAACCTTTCACACGACGCTCGAAATCTGGTTTCAAC
CCTCTTCCAGTACTCACCGCAAAATTCGTTTTCGATGATTATATACGTTG
CATGTCCGCGCGGCAACGCTTACAAAAGAGATGCGATGCTTTACGACACC
GGAAGATGACCAACATTGCAACGCTATTGGAGTTACCAGCACTCGCTTCA
CCGACCAACTATTACTCCATCACAAGTGGTGTGGATAATGGAAATGCCGT
CTGGTCTCCGTCAAGCCGAAGCTATTCATCCTCGCGCAATGCGAGCGGTT
ACAGTTCACCCGTTCATTCGCCAAACACCTCCAATACACCTTCCGCCACC
TCTTTACATACGCCTCAAACCAAATCACGTCTTCTTTCACCAAAAATGGA
ACAGATACTACAG
Run BLAST on NCBI

protein sequence of TCONS_00043853-protein

>TCONS_00043853-protein ID=TCONS_00043853-protein|Name=TCONS_00043853-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MSARQRLQKRCDALRHRKMTNIATLLELPALASPTNYYSITSGVDNGNAV
WSPSSRSYSSSRNASGYSSPVHSPNTSNTPSATSLHTPQTKSRLLSPKME
QILQ
Run BLAST on NCBI

transcript from alignment at sc0004665:2..464

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043853 ID=TCONS_00043853|Name=TCONS_00043853|organism=Clytia hemisphaerica|type=transcript|length=463bp|location=Sequence derived from alignment at sc0004665:2..464 (Clytia hemisphaerica)
CTGTAGTATCTGTTCCATTTTTGGTGAAAGAAGACGTGATTTGGTTTGAG
GCGTATGTAAAGAGGTGGCGGAAGGTGTATTGGAGGTGTTTGGCGAATGA
ACGGGTGAACTGTAACCGCTCGCATTGCGCGAGGATGAATAGCTTCGGCT
TGACGGAGACCAGACGGCATTTCCATTATCCACACCACTTGTGATGGAGT
AATAGTTGGTCGGTGAAGCGAGTGCTGGTAACTCCAATAGCGTTGCAATG
TTGGTCATCTTCCGGTGTCGTAAAGCATCGCATCTCTTTTGTAAGCGTTG
CCGCGCGGACATGCAACGTATATAATCATCGAAAACGAATTTTGCGGTGA
GTACTGGAAGAGGGTTGAAACCAGATTTCGAGCGTCGTGTGAAAGGTTGT
TGAATGACGATGTGTAGGGAACGGCTATCGTCTTTATCCGGTGTCGCTTC
AACGtcctaaaat

Coding sequence (CDS) from alignment at sc0004665:2..464

>TCONS_00043853 ID=TCONS_00043853|Name=TCONS_00043853|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0004665:2..464 (Clytia hemisphaerica)
CTGTAGTATCTGTTCCATTTTTGGTGAAAGAAGACGTGATTTGGTTTGAG
GCGTATGTAAAGAGGTGGCGGAAGGTGTATTGGAGGTGTTTGGCGAATGA
ACGGGTGAACTGTAACCGCTCGCATTGCGCGAGGATGAATAGCTTCGGCT
TGACGGAGACCAGACGGCATTTCCATTATCCACACCACTTGTGATGGAGT
AATAGTTGGTCGGTGAAGCGAGTGCTGGTAACTCCAATAGCGTTGCAATG
TTGGTCATCTTCCGGTGTCGTAAAGCATCGCATCTCTTTTGTAAGCGTTG
CCGCGCGGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027523XLOC_027523Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043853-exon-sc0004665-1491911889:2..464TCONS_00043853-exon-sc0004665-1491911889:2..464Clytia hemisphaericaexon
TCONS_00043853-exon-sc0004665-1510915933:2..464TCONS_00043853-exon-sc0004665-1510915933:2..464Clytia hemisphaericaexon
TCONS_00043853-exon-sc0004665-1575043694:2..464TCONS_00043853-exon-sc0004665-1575043694:2..464Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043853-proteinTCONS_00043853-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004665supercontigsc0004665:2..464 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.79489	6.84034	8.46315	9.44262	1.94166	8.0457	8.96937	7.20814	7.74512	14.6318	6.22354	4.85247	9.93614	12.4706	6.51007	8.13059	11.1349	11.5272	9.86613	6.37082	5.75013	7.37256	10.3092	8.91728	4.19075	3.26498	4.51166	2.50383	10.8088	10.2858
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043853 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top