TCONS_00043846 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043846
Unique NameTCONS_00043846
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length601

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043846 ID=TCONS_00043846|Name=TCONS_00043846|organism=Clytia hemisphaerica|type=transcript|length=601bp
GCAAAAGAGGGAAGTTTGTTGGCTTATTGGGATGGAAACGGTGTCAATAC
GATCGCTAACGCTCTCCAAGATTACGATAATAACAGGAACCAGCCTGTTT
GGACAGCCGGAAAATGGGACCAGCACCGCTATGTTTGGGACGGAaggcaa
aATGGCAATCTTACAGTTGAAGACACACAATGGAATCCTTACGCGGACAC
TAACAAGTGTATGGCATATAAGCGTGCCGAATACTCAGCAGGCACAGCTT
TTTTATCCGATAATTGTGGATCCAATCATAAGTTTTTATGTATGGCCTTA
AAAAACGGGCAAAACTGTCCTGGCTCGACTCTGGATGAGATCAAAGGAGG
TGAAAGATGTTATATCTTATTAAGACAGTCTTGGGACATAAATCAACTCA
TGCAGGCAGGCTCTTCTGATAAAAATTCTGCTTGCTTGGATGCGAGCACA
CATGGATCCAAAAAGTATGAAATGTTCATGAAAACTGCTGACATGATAAa
tgaagacatcttggaagacCTTGAAAGTCTTCCTGATGATATACCTGCTA
AAGTGTGGACTTATTTCAGACAGACAGACACTAACTCATGGAGAAAATTA
G
Run BLAST on NCBI

protein sequence of TCONS_00043846-protein

>TCONS_00043846-protein ID=TCONS_00043846-protein|Name=TCONS_00043846-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
AKEGSLLAYWDGNGVNTIANALQDYDNNRNQPVWTAGKWDQHRYVWDGRQ
NGNLTVEDTQWNPYADTNKCMAYKRAEYSAGTAFLSDNCGSNHKFLCMAL
KNGQNCPGSTLDEIKGGERCYILLRQSWDINQLMQAGSSDKNSACLDAST
HGSKKYEMFMKTADMINEDILEDLESLPDDIPAKVWTYFRQTDTNSWRKL
Run BLAST on NCBI

transcript from alignment at sc0004655:996..2718-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043846 ID=TCONS_00043846|Name=TCONS_00043846|organism=Clytia hemisphaerica|type=transcript|length=1723bp|location=Sequence derived from alignment at sc0004655:996..2718- (Clytia hemisphaerica)
GCAAAAGAGGGAAGTTTGTTGGCTTATTGGGATGGAAACGGTGTCAATAC
GATCGCTAACGCTCTCCAAGATTACGATAATAACAGGAACCAGCCTGTTT
GGACAGCCGGAAAATGGGACCAGCACCGCTATGTTTGGGACGGAAGGCAA
AGTAAAAAAAATCTCATTGGAATTTTTTATTATTTTATCATCAAACGATG
TCGTTTTAATTCCAATTTCTTTATGATTATTAATTTTTGGAGTGATAATT
AATTTAGGTCACAACCTGAAGGTATAGAGCAATTTATGAATCCTGAGTAG
ATCTTCCTAATTTGGCTGCTATTTATTGGTCATAAATATTTAGGGTATAT
TTTCTTTATGTTTTTGAGACATGAAACATACCCTAACTCACCCGAGTTCG
ATCGTAGTCGAGAAACCGATACAAATTGTCATATTTTGATGAGTAAATCA
ATAATTTTAAGTTAAGAACCTCCGAAGGCTCCAAAAATTTTGAATGTTCT
TATAAAAAAACGTGTATAAATTTCATTCTCCTTCTTATATCAACAGATGG
CAATCTTACAGTTGAAGACACACAATGGAATCCTTACGCGGACACTAACA
AGTGTATGGCATATAAGCGTGCCGAATACTCAGCAGGCACAGCTTTTTTA
TCCGATAATTGTGGATCCAATCATAAGTTTTTATGTATGGCCTTAAAAAA
CGGTAAGATGAAAAATAATTCTTTTTTTGAAATTATCATTAGCCTATTTG
ATAGGATTTCTGCGTCAAAATCTCTCACAATATGATCCTTCATTGTTGGT
AAAAAAAGATCGTCTTCAAAAAGTGACAAAAAACTCTCGGTGACAAAATG
TTTTTACAATTTTACAATCATGTTATTGACAATTATTGATAATTGATAAT
TATTGACAAAGAAAATGTGGAAATGCAAAATTGCTTATTTTTTTGGTATT
TTACTGTGTTGTTCCAGCCTTTATTCTTTTAAAAACCCAACGTGTATTAT
TTGTTTGTTTGTTTATTAAAGGATATACAGGATATACAGTCCAGGCACAC
TAGGACCTCCAAACCGGTCTATCTACATAATAATACAAAAGTGATCTTGA
ATCGTAACGTAATGGCTGCTTTATCCATGCCTGAGTCAGTTCTTCTTTAA
ATGCTTTAAATGATTGACTTATAGCATTAACAACATTTTTTGGGATCTGG
TTCCACGCCGGTATGGATCTGTAATAAAATGATTTTATTTGCACACCCCT
TAATCCATCATCTGAGAAATCTGAGATCAATTCGTTTACGATGGAGACGA
GTTCGGCGAGAAAACTTTTTGACGATGGTATTACTTCAATAAAAAGTCTG
TCGGCAAAAGTTAAATCTTTTCTTTGCAAGTGACGAAATTATTAACCTCC
TATCAGCCTGAATTTATTCTTTATAATAGGGCAAAACTGTCCTGGCTCGA
CTCTGGATGAGATCAAAGGAGGTGAAAGATGTTATATCTTATTAAGACAG
TCTTGGGACATAAATCAACTCATGCAGGCAGGCTCTTCTGATAAAAATTC
TGCTTGCTTGGATGCGAGCACACATGGATCCAAAAAGTATGAAATGTTCA
TGAAAACTGCTGACATGATAAATGAAGACATCTTGGAAGACCTTGAAAGT
CTTCCTGATGATATACCTGCTAAAGTGTGGACTTATTTCAGACAGACAGA
CACTAACTCATGGAGAAAATTAG

Coding sequence (CDS) from alignment at sc0004655:996..2718-

>TCONS_00043846 ID=TCONS_00043846|Name=TCONS_00043846|organism=Clytia hemisphaerica|type=CDS|length=1800bp|location=Sequence derived from alignment at sc0004655:996..2718- (Clytia hemisphaerica)
GGCAAAACTGTCCTGGCTCGACTCTGGATGAGATCAAAGGAGGTGAAAGA
TGTTATATCTTATTAAGACAGTCTTGGGACATAAATCAACTCATGCAGGC
AGGCTCTTCTGATAAAAATTCTGCTTGCTTGGATGCGAGCACACATGGAT
CCAAAAAGTATGAAATGTTCATGAAAACTGCTGACATGATAAATGAAGAC
ATCTTGGAAGACCTTGAAAGTCTTCCTGATGATATACCTGCTAAAGTGTG
GACTTATTTCAGACAGACAGACACTAACTCATGGAGAAAATTAATGGCAA
TCTTACAGTTGAAGACACACAATGGAATCCTTACGCGGACACTAACAAGT
GTATGGCATATAAGCGTGCCGAATACTCAGCAGGCACAGCTTTTTTATCC
GATAATTGTGGATCCAATCATAAGTTTTTATGTATGGCCTTAAAAAACGG
CAAAAGAGGGAAGTTTGTTGGCTTATTGGGATGGAAACGGTGTCAATACG
ATCGCTAACGCTCTCCAAGATTACGATAATAACAGGAACCAGCCTGTTTG
GACAGCCGGAAAATGGGACCAGCACCGCTATGTTTGGGACGGAAGGCAAA
GGCAAAACTGTCCTGGCTCGACTCTGGATGAGATCAAAGGAGGTGAAAGA
TGTTATATCTTATTAAGACAGTCTTGGGACATAAATCAACTCATGCAGGC
AGGCTCTTCTGATAAAAATTCTGCTTGCTTGGATGCGAGCACACATGGAT
CCAAAAAGTATGAAATGTTCATGAAAACTGCTGACATGATAAATGAAGAC
ATCTTGGAAGACCTTGAAAGTCTTCCTGATGATATACCTGCTAAAGTGTG
GACTTATTTCAGACAGACAGACACTAACTCATGGAGAAAATTAATGGCAA
TCTTACAGTTGAAGACACACAATGGAATCCTTACGCGGACACTAACAAGT
GTATGGCATATAAGCGTGCCGAATACTCAGCAGGCACAGCTTTTTTATCC
GATAATTGTGGATCCAATCATAAGTTTTTATGTATGGCCTTAAAAAACGG
CAAAAGAGGGAAGTTTGTTGGCTTATTGGGATGGAAACGGTGTCAATACG
ATCGCTAACGCTCTCCAAGATTACGATAATAACAGGAACCAGCCTGTTTG
GACAGCCGGAAAATGGGACCAGCACCGCTATGTTTGGGACGGAAGGCAAA
GGCAAAACTGTCCTGGCTCGACTCTGGATGAGATCAAAGGAGGTGAAAGA
TGTTATATCTTATTAAGACAGTCTTGGGACATAAATCAACTCATGCAGGC
AGGCTCTTCTGATAAAAATTCTGCTTGCTTGGATGCGAGCACACATGGAT
CCAAAAAGTATGAAATGTTCATGAAAACTGCTGACATGATAAATGAAGAC
ATCTTGGAAGACCTTGAAAGTCTTCCTGATGATATACCTGCTAAAGTGTG
GACTTATTTCAGACAGACAGACACTAACTCATGGAGAAAATTAATGGCAA
TCTTACAGTTGAAGACACACAATGGAATCCTTACGCGGACACTAACAAGT
GTATGGCATATAAGCGTGCCGAATACTCAGCAGGCACAGCTTTTTTATCC
GATAATTGTGGATCCAATCATAAGTTTTTATGTATGGCCTTAAAAAACGG
CAAAAGAGGGAAGTTTGTTGGCTTATTGGGATGGAAACGGTGTCAATACG
ATCGCTAACGCTCTCCAAGATTACGATAATAACAGGAACCAGCCTGTTTG
GACAGCCGGAAAATGGGACCAGCACCGCTATGTTTGGGACGGAAGGCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027516XLOC_027516Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043846-proteinTCONS_00043846-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043846-exon-sc0004655-1575043694:2568..2718TCONS_00043846-exon-sc0004655-1575043694:2568..2718Clytia hemisphaericaexon
TCONS_00043846-exon-sc0004655-1575043694:2017..2172TCONS_00043846-exon-sc0004655-1575043694:2017..2172Clytia hemisphaericaexon
TCONS_00043846-exon-sc0004655-1575043694:996..1289TCONS_00043846-exon-sc0004655-1575043694:996..1289Clytia hemisphaericaexon
TCONS_00043846-exon-sc0004655-1510915933:2568..2718TCONS_00043846-exon-sc0004655-1510915933:2568..2718Clytia hemisphaericaexon
TCONS_00043846-exon-sc0004655-1510915933:2017..2172TCONS_00043846-exon-sc0004655-1510915933:2017..2172Clytia hemisphaericaexon
TCONS_00043846-exon-sc0004655-1510915933:996..1289TCONS_00043846-exon-sc0004655-1510915933:996..1289Clytia hemisphaericaexon
TCONS_00043846-exon-sc0004655-1491911889:2568..2718TCONS_00043846-exon-sc0004655-1491911889:2568..2718Clytia hemisphaericaexon
TCONS_00043846-exon-sc0004655-1491911889:2017..2172TCONS_00043846-exon-sc0004655-1491911889:2017..2172Clytia hemisphaericaexon
TCONS_00043846-exon-sc0004655-1491911889:996..1289TCONS_00043846-exon-sc0004655-1491911889:996..1289Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004655supercontigsc0004655:996..2718 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.216692	0	0.137578	0.100255	0.12205	0	0	0	0.327297	0.188936	0.275079	0	5.01768	3.94741	1.11066	0.515801	0	0.557102	7.83635	12.0118	1.33105	1.79071	0.207541	0.188685	0.787527	1.2432	0.1241	0	0.100453	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043846 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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