TCONS_00043838 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043838
Unique NameTCONS_00043838
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length110

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043838 ID=TCONS_00043838|Name=TCONS_00043838|organism=Clytia hemisphaerica|type=transcript|length=110bp
tttcagAGGCCAAGAAGAGTCGGTGCTAAGTTTTCTGGTGAAGACATAAA
ACCTGACGAACTCCTACCTGGAGAACTGAAGTTTGACTTTGATGGTAAAA
GAGATAGGTA
Run BLAST on NCBI

transcript from alignment at sc0004645:4384..5114+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043838 ID=TCONS_00043838|Name=TCONS_00043838|organism=Clytia hemisphaerica|type=transcript|length=731bp|location=Sequence derived from alignment at sc0004645:4384..5114+ (Clytia hemisphaerica)
tttcagAGGCCAAGAAGAGTCGGTGCTAAGTTTTCTGGTGAAGACATAAA
ACCTGACGAACTCCTACCTGTAAGTAAATTTGAAAAGCTTATAGGAAAAA
CAAACAGTTCATATCTgtggatgaatgaatgaatgtatGAAGCTTTTTAT
TAGAAATACTAAAAATATTTcgaactaaatttttttttaagtgagTATTT
CTTTATTATAGAATAGGATATATACCTATATTCGTATTTCATCATTTATT
CAGATGGGGGATTTTCGATACCTTTCATAGttacatttttttgattttcc
taTTCCATTTTTATGTACACTAAAAAATCTTCCTCTGTATAAGTATAAGC
GTGTATTGTTAAAATCTTTGAAGTTAAATTCTTGAACTTGTTTCCTGATA
TTTTCCCAGTTAgtattttttgggatttttatGTGAAGGGTGAAGATCTT
GTATCTCCATCAAAAGTGCTAGATTTACTTTAGTCAGAAAACTTCTGATA
GTTATGAGACAAATTATATGTAATGTTTGCTGCTCCTTCAGGTAACAAAT
AGTTACAATAGATAAAAGAATAAGGATTGCATTAAATCTACGTTTATCAT
ATTCATATTCATGCCCAGTGGATTAAATTGTATCACTATTAGATTGTCTC
TTTATCAAATAAGTAGCATACAACAACTCCTACATTTTAGGGAGAACTGA
AGTTTGACTTTGATGGTAAAAGAGATAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027509XLOC_027509Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043838-exon-sc0004645-1491911889:4384..4452TCONS_00043838-exon-sc0004645-1491911889:4384..4452Clytia hemisphaericaexon
TCONS_00043838-exon-sc0004645-1510915933:4384..4452TCONS_00043838-exon-sc0004645-1510915933:4384..4452Clytia hemisphaericaexon
TCONS_00043838-exon-sc0004645-1575043694:4384..4452TCONS_00043838-exon-sc0004645-1575043694:4384..4452Clytia hemisphaericaexon
TCONS_00043838-exon-sc0004645-1491911889:5074..5114TCONS_00043838-exon-sc0004645-1491911889:5074..5114Clytia hemisphaericaexon
TCONS_00043838-exon-sc0004645-1510915933:5074..5114TCONS_00043838-exon-sc0004645-1510915933:5074..5114Clytia hemisphaericaexon
TCONS_00043838-exon-sc0004645-1575043694:5074..5114TCONS_00043838-exon-sc0004645-1575043694:5074..5114Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004645supercontigsc0004645:4384..5114 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043838 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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