TCONS_00043827 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043827
Unique NameTCONS_00043827
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length531

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043827 ID=TCONS_00043827|Name=TCONS_00043827|organism=Clytia hemisphaerica|type=transcript|length=531bp
GCATGAGATTATAAAGCTAAGTTATAGTTACAATTTCCAATTTAAAAAGC
ATAATAATCCACATTTTAAAGAGTACAAAGTTCTTAGTAGTGGAAGCCAA
AGGAAGATCAAACACCTATTTTATATTTCTATGAAATCCAAATAATATGC
AATGCATTACAGAAATCTTTATGATTGCTAACGAAATACTTAAAATCATG
GATCGAAACTTCGCAGACATCAACTTTGATAAGTCTCCTTTCAACTACAT
ACATTCCCAAAGAAATTGGTAAAATAAAAGACAACTACTAAACCATTAAA
TTAAAGTGAAAGAAACCACAGAGAAATACACATGTTCTTGCCGAcatctt
gaaaaatattataaaaataatccGCAGGTTGTATCTCAGTGGCTGGAAAA
TGAATAATATGATCTGCAGACCTAGGCTTTAGTATAAAGCGcgctggtct
gtaaaatacacaaaacacAATCTACCGATTCTTAAAAACGAAAGGCTTCT
ATTGTTAAAACTCCCGCAATGTCCCTTTAAT
Run BLAST on NCBI

transcript from alignment at sc0004635:2226..2756

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043827 ID=TCONS_00043827|Name=TCONS_00043827|organism=Clytia hemisphaerica|type=transcript|length=531bp|location=Sequence derived from alignment at sc0004635:2226..2756 (Clytia hemisphaerica)
ATTAAAGGGACATTGCGGGAGTTTTAACAATAGAAGCCTTTCGTTTTTAA
GAATCGGTAGATTgtgttttgtgtattttacagaccagcgCGCTTTATAC
TAAAGCCTAGGTCTGCAGATCATATTATTCATTTTCCAGCCACTGAGATA
CAACCTGCggattatttttataatatttttcaagatgTCGGCAAGAACAT
GTGTATTTCTCTGTGGTTTCTTTCACTTTAATTTAATGGTTTAGTAGTTG
TCTTTTATTTTACCAATTTCTTTGGGAATGTATGTAGTTGAAAGGAGACT
TATCAAAGTTGATGTCTGCGAAGTTTCGATCCATGATTTTAAGTATTTCG
TTAGCAATCATAAAGATTTCTGTAATGCATTGCATATTATTTGGATTTCA
TAGAAATATAAAATAGGTGTTTGATCTTCCTTTGGCTTCCACTACTAAGA
ACTTTGTACTCTTTAAAATGTGGATTATTATGCTTTTTAAATTGGAAATT
GTAACTATAACTTAGCTTTATAATCTCATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027499XLOC_027499Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043827-exon-sc0004635-1491911889:2226..2756TCONS_00043827-exon-sc0004635-1491911889:2226..2756Clytia hemisphaericaexon
TCONS_00043827-exon-sc0004635-1510915933:2226..2756TCONS_00043827-exon-sc0004635-1510915933:2226..2756Clytia hemisphaericaexon
TCONS_00043827-exon-sc0004635-1575043694:2226..2756TCONS_00043827-exon-sc0004635-1575043694:2226..2756Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004635supercontigsc0004635:2226..2756 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.145986	0.179897	0.830835	2.22874	1.22945	1.44347	0.90702	1.97017	2.00617	1.23263	0.942385	0.794056	0.493075	0.0625635	0.220299	0	0.0847763	0.117123	0.259152	0.350123	0.467644	0.252659	0.124402	1.53783	1.50601	1.13238	1.89665	0.282236	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043827 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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