TCONS_00043821 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043821
Unique NameTCONS_00043821
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length653

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043821 ID=TCONS_00043821|Name=TCONS_00043821|organism=Clytia hemisphaerica|type=transcript|length=653bp
CAAAAACGGAACTGAGAAACAAGAGGGAtcgaataaaaaaatcacaacgC
GGCGAAAttatatatctttatttttcagacttGAAGGAAATGAATGTGGA
TTTCCTGTTCCTCGTATTTGCCGCCCTTACTATGGCGAAGGCGGGTGACG
TTTTCAATGACTTTCACGTGTGCGGAAAAGTCAAATCCATTGGTGCTAAA
ACACCTCTCAATACCCGTATTGTCGGTGGAGTAAATGCCGAATCTGGAGA
TTTGCCATGGCAGATAGCAATCCGTGGTGGAAATTCCGGTTTACCATTTT
GTGGAGCAACTCTGATCAGTAAGAAATGGGCTATTTCTGCTGCACATTGC
GAAATTAAAGTTGGTCAACAAATTGTACTTGGTGCGAATGATCTAGGCAA
AACCAATGAAGATTCAAGACAGATTCGAAAAGTGAAGAAAGTGATCAACC
ACGGTGGATTCATTTCCAGTACACTCTCAAACGATATTTCTTTGTTTGAG
TTGGATCAAGAAGTGCAAATCAACGACTATGTTCGTCCTGCGTGCTTGCT
GGAGAAAGCAATAGCTGCAGGATCAAAAGTTGTTATTTCTGGCTGGGGAA
CAACGCAACCAGGTGGAAGCCGACCCAATATTCTCCAAAAAGCTGAGGTA
GCT
Run BLAST on NCBI

protein sequence of TCONS_00043821-protein

>TCONS_00043821-protein ID=TCONS_00043821-protein|Name=TCONS_00043821-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
KTELRNKRDRIKKSQRGEIIYLYFSDLKEMNVDFLFLVFAALTMAKAGDV
FNDFHVCGKVKSIGAKTPLNTRIVGGVNAESGDLPWQIAIRGGNSGLPFC
GATLISKKWAISAAHCEIKVGQQIVLGANDLGKTNEDSRQIRKVKKVINH
GGFISSTLSNDISLFELDQEVQINDYVRPACLLEKAIAAGSKVVISGWGT
TQPGGSRPNILQKAEVA
Run BLAST on NCBI

transcript from alignment at sc0004627:987..2202+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043821 ID=TCONS_00043821|Name=TCONS_00043821|organism=Clytia hemisphaerica|type=transcript|length=1216bp|location=Sequence derived from alignment at sc0004627:987..2202+ (Clytia hemisphaerica)
CAAAAACGGAACTGAGAAACAAGAGGGAtcgaataaaaaaatcacaacgC
GGCGAAAttatatatctttatttttcagacttGAAGGAAATGAATGTGGA
TTTCCTGTTCCTCGTATTTGCCGCCCTTACTATGGCGAAGgtataaaatc
ttttaaatgttAGAGCGAATTGAGGGTTTCGATACAAATTTGTTGTTCAG
ACAATTTACAAGATTCTTAAAATTGAATTATTCTATGTCTTTTTGTATAT
ATTCTTTTGTTTGTTATACTTAGGCGGGTGACGTTTTCAATGACTTTCAC
GTGTGCGGAAAAGTCAAATCCATTGGTGCTAAAACACCTCTCAATACCCG
TATTGTCGGTGGAGTAAATGCCGAATCTGGAGATTTGCCATGGCAGATAG
CAATCCGTGGTGGAAATTCCGGTTTACCATTTTGTGGAGCAACTCTGATC
AGTAAGAAATGGGCTATTTCTGCTGCACATTGCGAAATTAAAGTTGGTCA
ACAAATTGTACTTGGTGCGAATGATCTAGGCAAAACCAATGAAGGTATAT
TACTGGAATAATGATTCGAAATCCCACCAATTTGATAATAGCAGCTAAAA
ATGAGATTCCTTTCTATCAAGGCAATAACTTCATGACTTGAGTTATCGTT
GGGAAATTCTAGTTATTTACTCCCGGTAACTCGAAATTTATTCGAACACC
CACCGAATGATGATATGATATGAGCCCTCTTCACtggggaatgggtccta
ctctACTACTTGCGAAATAGAAATTCCTCCTCTTTCGATTTGGAACGCTT
AGCGCTGTCCAGACACCACTGGTTCTGTGCACGCGAGACACCGATACCAT
GATGCATAGTGAATAACCCACCGATTAACTTCGATTTATTTGTAGTAAAA
GTTAGTATTTCTAAATGctatatgtgttttttttttaaattggtttaacC
ACGGCTTCTATCTTTTCCAAACAGATTCAAGACAGATTCGAAAAGTGAAG
AAAGTGATCAACCACGGTGGATTCATTTCCAGTACACTCTCAAACGATAT
TTCTTTGTTTGAGTTGGATCAAGAAGTGCAAATCAACGACTATGTTCGTC
CTGCGTGCTTGCTGGAGAAAGCAATAGCTGCAGGATCAAAAGTTGTTATT
TCTGGCTGGGGAACAACGCAACCAGGTGGAAGCCGACCCAATATTCTCCA
AAAAGCTGAGGTAGCT

Coding sequence (CDS) from alignment at sc0004627:987..2202+

>TCONS_00043821 ID=TCONS_00043821|Name=TCONS_00043821|organism=Clytia hemisphaerica|type=CDS|length=1953bp|location=Sequence derived from alignment at sc0004627:987..2202+ (Clytia hemisphaerica)
AAAACGGAACTGAGAAACAAGAGGGAtcgaataaaaaaatcacaacgCGG
CGAAAttatatatctttatttttcagacttGAAGGAAATGAATGTGGATT
TCCTGTTCCTCGTATTTGCCGCCCTTACTATGGCGAAGGCGGGTGACGTT
TTCAATGACTTTCACGTGTGCGGAAAAGTCAAATCCATTGGTGCTAAAAC
ACCTCTCAATACCCGTATTGTCGGTGGAGTAAATGCCGAATCTGGAGATT
TGCCATGGCAGATAGCAATCCGTGGTGGAAATTCCGGTTTACCATTTTGT
GGAGCAACTCTGATCAGTAAGAAATGGGCTATTTCTGCTGCACATTGCGA
AATTAAAGTTGGTCAACAAATTGTACTTGGTGCGAATGATCTAGGCAAAA
CCAATGAAGATTCAAGACAGATTCGAAAAGTGAAGAAAGTGATCAACCAC
GGTGGATTCATTTCCAGTACACTCTCAAACGATATTTCTTTGTTTGAGTT
GGATCAAGAAGTGCAAATCAACGACTATGTTCGTCCTGCGTGCTTGCTGG
AGAAAGCAATAGCTGCAGGATCAAAAGTTGTTATTTCTGGCTGGGGAACA
ACGCAACCAGGTGGAAGCCGACCCAATATTCTCCAAAAAGCTGAGGTAGC
TAAAACGGAACTGAGAAACAAGAGGGAtcgaataaaaaaatcacaacgCG
GCGAAAttatatatctttatttttcagacttGAAGGAAATGAATGTGGAT
TTCCTGTTCCTCGTATTTGCCGCCCTTACTATGGCGAAGGCGGGTGACGT
TTTCAATGACTTTCACGTGTGCGGAAAAGTCAAATCCATTGGTGCTAAAA
CACCTCTCAATACCCGTATTGTCGGTGGAGTAAATGCCGAATCTGGAGAT
TTGCCATGGCAGATAGCAATCCGTGGTGGAAATTCCGGTTTACCATTTTG
TGGAGCAACTCTGATCAGTAAGAAATGGGCTATTTCTGCTGCACATTGCG
AAATTAAAGTTGGTCAACAAATTGTACTTGGTGCGAATGATCTAGGCAAA
ACCAATGAAGATTCAAGACAGATTCGAAAAGTGAAGAAAGTGATCAACCA
CGGTGGATTCATTTCCAGTACACTCTCAAACGATATTTCTTTGTTTGAGT
TGGATCAAGAAGTGCAAATCAACGACTATGTTCGTCCTGCGTGCTTGCTG
GAGAAAGCAATAGCTGCAGGATCAAAAGTTGTTATTTCTGGCTGGGGAAC
AACGCAACCAGGTGGAAGCCGACCCAATATTCTCCAAAAAGCTGAGGTAG
CTAAAACGGAACTGAGAAACAAGAGGGAtcgaataaaaaaatcacaacgC
GGCGAAAttatatatctttatttttcagacttGAAGGAAATGAATGTGGA
TTTCCTGTTCCTCGTATTTGCCGCCCTTACTATGGCGAAGGCGGGTGACG
TTTTCAATGACTTTCACGTGTGCGGAAAAGTCAAATCCATTGGTGCTAAA
ACACCTCTCAATACCCGTATTGTCGGTGGAGTAAATGCCGAATCTGGAGA
TTTGCCATGGCAGATAGCAATCCGTGGTGGAAATTCCGGTTTACCATTTT
GTGGAGCAACTCTGATCAGTAAGAAATGGGCTATTTCTGCTGCACATTGC
GAAATTAAAGTTGGTCAACAAATTGTACTTGGTGCGAATGATCTAGGCAA
AACCAATGAAGATTCAAGACAGATTCGAAAAGTGAAGAAAGTGATCAACC
ACGGTGGATTCATTTCCAGTACACTCTCAAACGATATTTCTTTGTTTGAG
TTGGATCAAGAAGTGCAAATCAACGACTATGTTCGTCCTGCGTGCTTGCT
GGAGAAAGCAATAGCTGCAGGATCAAAAGTTGTTATTTCTGGCTGGGGAA
CAACGCAACCAGGTGGAAGCCGACCCAATATTCTCCAAAAAGCTGAGGTA
GCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027495XLOC_027495Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043821-proteinTCONS_00043821-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043821-exon-sc0004627-1491911889:987..1126TCONS_00043821-exon-sc0004627-1491911889:987..1126Clytia hemisphaericaexon
TCONS_00043821-exon-sc0004627-1510915933:987..1126TCONS_00043821-exon-sc0004627-1510915933:987..1126Clytia hemisphaericaexon
TCONS_00043821-exon-sc0004627-1575043694:987..1126TCONS_00043821-exon-sc0004627-1575043694:987..1126Clytia hemisphaericaexon
TCONS_00043821-exon-sc0004627-1491911889:1260..1530TCONS_00043821-exon-sc0004627-1491911889:1260..1530Clytia hemisphaericaexon
TCONS_00043821-exon-sc0004627-1510915933:1260..1530TCONS_00043821-exon-sc0004627-1510915933:1260..1530Clytia hemisphaericaexon
TCONS_00043821-exon-sc0004627-1575043694:1260..1530TCONS_00043821-exon-sc0004627-1575043694:1260..1530Clytia hemisphaericaexon
TCONS_00043821-exon-sc0004627-1491911889:1961..2202TCONS_00043821-exon-sc0004627-1491911889:1961..2202Clytia hemisphaericaexon
TCONS_00043821-exon-sc0004627-1510915933:1961..2202TCONS_00043821-exon-sc0004627-1510915933:1961..2202Clytia hemisphaericaexon
TCONS_00043821-exon-sc0004627-1575043694:1961..2202TCONS_00043821-exon-sc0004627-1575043694:1961..2202Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004627supercontigsc0004627:987..2202 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.107756	0.0851503	0	0	0	0.0834043	0	0.0532162	25.3588	15.7637	0	0.0973835	1.1397	0.676301	369.226	343.557	3.77271	4.76726	5.77189	5.01098	5.319	6.12526	37.5529	32.169	0.251614	0.180718
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001314Peptidase_S1A
IPR001254Trypsin_dom
IPR018114TRYPSIN_HIS
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
[Close]
BLAST of TCONS_00043821 vs. Swiss-Prot (Human)
Match: ST14 (Suppressor of tumorigenicity 14 protein OS=Homo sapiens GN=ST14 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 7.565e-26
Identity = 57/156 (36.54%), Postives = 86/156 (55.13%), Query Frame = 3 
Query:  216 RIVGGVNAESGDLPWQIAIRGGNSGLPFCGATLISKKWAISAAHCEI---------KVGQQIVLGANDLGKTNEDSRQIRKVKKVINHGGFISSTLSNDISLFELDQEVQINDYVRPACLLEKA--IAAGSKVVISGWGTTQPGGSRPNILQKAEV 650
            R+VGG +A+ G+ PWQ+++     G   CGA+LIS  W +SAAHC I                LG +D  + +    Q R++K++I+H  F   T   DI+L EL++  + +  VRP CL + +    AG  + ++GWG TQ GG+   ILQK E+
Sbjct:  614 RVVGGTDADEGEWPWQVSLHALGQGH-ICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLPDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEI 768
The following BLAST results are available for this feature:
BLAST of TCONS_00043821 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ST147.565e-2636.54Suppressor of tumorigenicity 14 protein OS=Homo sa... [more]
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