TCONS_00043820 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043820
Unique NameTCONS_00043820
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043820 ID=TCONS_00043820|Name=TCONS_00043820|organism=Clytia hemisphaerica|type=transcript|length=323bp
tagAGTACCATACACATTTGATGTCAGTTATATGGAATGTGAAGAATTGA
TCCCGTATGGTCGAATGTCATACCTCAACTTCAACCCAGTTGTCCAGAAA
AAACATCATGAATTGTTGCAAGAAGCCAACATGGCGTTATCAGGAGAGCG
CGAAGAGTTTGATGGTGTTTCAGATGAAGAAATGGCTCACAGGTACACAA
AATTAACGGGCAAGACTAATGGTCTTTCATAttctctttttaataaaaaa
aactttcggaATCCCTTTGTCCCCTTGTTTTTAAGTGTTTGTTACCCCCT
GGTAGGCTCCCTATTTTCCTCTT
Run BLAST on NCBI

protein sequence of TCONS_00043820-protein

>TCONS_00043820-protein ID=TCONS_00043820-protein|Name=TCONS_00043820-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
RVPYTFDVSYMECEELIPYGRMSYLNFNPVVQKKHHELLQEANMALSGER
EEFDGVSDEEMAHRYTKLTGKTNGLSYSLFNKKNFRNPFVPLFLSVCYPL
VGSLFSS
Run BLAST on NCBI

transcript from alignment at sc0004625:346..1725-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043820 ID=TCONS_00043820|Name=TCONS_00043820|organism=Clytia hemisphaerica|type=transcript|length=1380bp|location=Sequence derived from alignment at sc0004625:346..1725- (Clytia hemisphaerica)
TAGAGTACCATACACATTTGATGTCAGTTATATGGAATGTGAAGAATTGA
TCCCGTATGGTCGAATGTCATACCTCAACTTCAACCCAGTTGTCCAGGTA
TGTTGTTCGGGGTATAAAGCAAATCTAATATACCAACTAGGTATTAAATG
GATCTTTAAATCTCTAAATTTAATTTTGTGCTTTGTGTAAGCGAAAACCA
ATAACAGTGCTNAAATCTAATATACCAACTAGGTATTAAATGGATCTTTA
AATCTCTAAATTTAATTTTGTGCTTTGTGTAAGCGAAAACCAATAACAGT
GCTCGATGTTAATGATAACAGAGCTTTTTACTAGTTTGAGTAAAGAAAAA
CTTAAAATTTGTTTTCCTTACTCAGACTATGTTCACACTATACCTGATAG
CTTTTCGAAACGGTTCGATAACCCATCCGACATAATGGGAACACCTTTCG
GCATGAAATGATACAAAGGACTATCTTACAAGGACTATTTTACACATCGT
AGACTCAAAAACTTTTTAAAAAGTTAAATGACTCACAGAATATGATCTCA
TGACGTAAATTTTTGTAAATATAATTAGCAACAAAAAGGTTTCAGTGACT
CAGAATCACTCCGAATGACTCTAGGTCCGCTTGAGATGGGATCCAGCTAG
CTTACAGTGTCCGGGGAAAAAACAATTGTAAATTAAAACCCTTATGATCA
TTTCTCTTTTAGAGTTTAGAATTTTTACAATTAGATAAAAGTTCTGTGTC
TAGTCATTAGTTATTTAGTTCCTGAAGTAATTTAAAACGGATATTAGGTG
AATTTGGCATTTTCAGGACGATTTTACTTAGAAAAACTTTCTTCCACCTT
TTTTTTCTGGGCACACTCTAGTTGTGATAAGCTTCCAGCAAGTTCAGCAT
TTTTGAAAGCAGCTCCTTAAAAAAAAACTACGATAAAATTTTGACTGTCT
AACAAGACATCATCTTTCTTTTCGTGTATGTATATTTAGGAACAATAACA
TTTCTGCCAAAATTTTAGAACTTTTTCAAAAATAATGTTTTAGCAAATGT
GAGCATGTAACAGTCTTCACATTTAGAATTTCTTTTCAAAAATGTGAAGA
GAAAATGTTGCGTCTGAATCGGCTTTTAAGATCTTCTCTTTTCTTCTCGT
GTAGAAAAAACATCATGAATTGTTGCAAGAAGCCAACATGGCGTTATCAG
GAGAGCGCGAAGAGTTTGATGGTGTTTCAGATGAAGAAATGGCTCACAGG
TACACAAAATTAACGGGCAAGACTAATGGTCTTTCATATTCTCTTTTTAA
TAAAAAAAACTTTCGGAATCCCTTTGTCCCCTTGTTTTTAAGTGTTTGTT
ACCCCCTGGTAGGCTCCCTATTTTCCTCTT

Coding sequence (CDS) from alignment at sc0004625:346..1725-

>TCONS_00043820 ID=TCONS_00043820|Name=TCONS_00043820|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at sc0004625:346..1725- (Clytia hemisphaerica)
AAAAAACATCATGAATTGTTGCAAGAAGCCAACATGGCGTTATCAGGAGA
GCGCGAAGAGTTTGATGGTGTTTCAGATGAAGAAATGGCTCACAGGTACA
CAAAATTAACGGGCAAGACTAATGGTCTTTCATATTCTCTTTTTAATAAA
AAAAACTTTCGGAATCCCTTTGTCCCCTTGTTTTTAAGTGTTTGTTACCC
CCTGGTAGGCTCCCTATTTTCCTCTAGAGTACCATACACATTTGATGTCA
GTTATATGGAATGTGAAGAATTGATCCCGTATGGTCGAATGTCATACCTC
AACTTCAACCCAGTTGTCCAGAAAAAACATCATGAATTGTTGCAAGAAGC
CAACATGGCGTTATCAGGAGAGCGCGAAGAGTTTGATGGTGTTTCAGATG
AAGAAATGGCTCACAGGTACACAAAATTAACGGGCAAGACTAATGGTCTT
TCATATTCTCTTTTTAATAAAAAAAACTTTCGGAATCCCTTTGTCCCCTT
GTTTTTAAGTGTTTGTTACCCCCTGGTAGGCTCCCTATTTTCCTCTAGAG
TACCATACACATTTGATGTCAGTTATATGGAATGTGAAGAATTGATCCCG
TATGGTCGAATGTCATACCTCAACTTCAACCCAGTTGTCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027494XLOC_027494Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043820-proteinTCONS_00043820-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043820-exon-sc0004625-1575043694:1629..1725TCONS_00043820-exon-sc0004625-1575043694:1629..1725Clytia hemisphaericaexon
TCONS_00043820-exon-sc0004625-1575043694:346..571TCONS_00043820-exon-sc0004625-1575043694:346..571Clytia hemisphaericaexon
TCONS_00043820-exon-sc0004625-1510915933:1629..1725TCONS_00043820-exon-sc0004625-1510915933:1629..1725Clytia hemisphaericaexon
TCONS_00043820-exon-sc0004625-1510915933:346..571TCONS_00043820-exon-sc0004625-1510915933:346..571Clytia hemisphaericaexon
TCONS_00043820-exon-sc0004625-1491911889:1629..1725TCONS_00043820-exon-sc0004625-1491911889:1629..1725Clytia hemisphaericaexon
TCONS_00043820-exon-sc0004625-1491911889:346..571TCONS_00043820-exon-sc0004625-1491911889:346..571Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004625supercontigsc0004625:346..1725 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.29011	4.55178	9.5131	9.9965	8.8126	4.31094	6.00112	8.23999	15.7337	18.5143	22.6994	19.2739	11.7966	13.1106	15.7263	16.3078	14.717	19.1549	4.63112	14.5384	12.3356	7.92469	8.56311	11.6777	4.34334	7.45448	8.10717	6.3753	7.94394	7.03793
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019324MPP6
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043820 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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