TCONS_00043798 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043798
Unique NameTCONS_00043798
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1016

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043798 ID=TCONS_00043798|Name=TCONS_00043798|organism=Clytia hemisphaerica|type=transcript|length=1016bp
GTCCTTGTaaaaaattctggaaaaatCAGAAGGAATTCAAACGAAGAACG
ACAAACAGTCAAACCAGGCCAGGACTAGAACTGACTTTAGGAAGGAAATC
TTAAAATGTTTGGAAGATCAATGTTTGGGGATGATCCCTTTTTCAGTTCT
TCATCCAATATGTTTGAAGAGTTTAATCGTATGGATCAAATGATGTCATC
TTTTGGGATGCCAGGAGGCAGGATGGGACAGCCACCACACCACTCTGATA
TAGGTGACTCTTCTAATAGACAGCAAAGAAATCATCAAAGACGTCCacac
caacaacaacaacaccagAACGAGATGTTGTCACCTATTGGTAGAGGAGG
TATGTTTGGTGGTGGAAGTGTGTTCCAAGAGATGAATCGTATGATGGCTG
ACATGGAGAGAGGCTCTTCGTCATCCACTGGGCAATTTTATTCGTCATCA
AAAGTCATGTCCTACTCAAGAGGTGGTGAAGGAGACCAACCAAAATATTA
CGAAGCATCCTCTCAAATTACTCAAGGGCCAGATGGTTTACGTCAAACAC
GAAAAAGCGAACGAAACTCAGAGACTGGGACCGACAGAATGGCTATTGGT
CACCATATACATGATCGAGGTCACGTGGTCGAACGTATTCGAAACAATCG
AACCAATGAacgagaagaaaaacaaaatttcattaatcTTGATGAAGGTA
CGTCACTTCTGTTTTTCGTTAGTTGCCATTAATATTTTCcttactaactg
attttactaTTATCACAATGTTTATACTGTTATTACAAATAAAGCGCCCT
GCTAACTTAGCGAAAAGCTACCATTACGGAATAAAAACGTTCAAATTTGA
AGGCTGAGTTGATTTCTTATGcaatttgaaagttttattCATAATGAAGT
TTGGATTACTCTCGAGTCGAGTTTCTGATAAACGGAGGGCATAAAACTTG
ACTAAAGGAAATTTTCACTGAGGTTAGGGGGTAAATAATTGGTATAttta
atcaatttaatttaat
Run BLAST on NCBI

protein sequence of TCONS_00043798-protein

>TCONS_00043798-protein ID=TCONS_00043798-protein|Name=TCONS_00043798-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MFGRSMFGDDPFFSSSSNMFEEFNRMDQMMSSFGMPGGRMGQPPHHSDIG
DSSNRQQRNHQRRPHQQQQHQNEMLSPIGRGGMFGGGSVFQEMNRMMADM
ERGSSSSTGQFYSSSKVMSYSRGGEGDQPKYYEASSQITQGPDGLRQTRK
SERNSETGTDRMAIGHHIHDRGHVVERIRNNRTNEREEKQNFINLDEGTS
LLFFVSCH
Run BLAST on NCBI

transcript from alignment at sc0004594:39..6030+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043798 ID=TCONS_00043798|Name=TCONS_00043798|organism=Clytia hemisphaerica|type=transcript|length=5992bp|location=Sequence derived from alignment at sc0004594:39..6030+ (Clytia hemisphaerica)
GTCCTTGTaaaaaattctggaaaaatCAGAAGGAATTCAAACGAAGAACG
ACAAACAGTCAAACCAGGCCAGGACTAGAACTGACTTTAGGAAGGAAATC
TTAAAATGTTTGGAAGATCAATGTTTGGGGATGATCCCTTTTTCAGGTAT
ATTATTTTAtgtacaatgtatagcaatgtgccctcccggttattaccata
atggctttatggcaactcctgaacttgggcacaggatgtacggttgtTAT
TTTAtgtatacattttttatttctttcccACTGCTActactaccgtaagt
tggtctaatatcgacatccctcctcatctaaattccgacacccttcttta
gagacaggaataatatgaaagcttgaatcactgattgaaaaaggattatt
cctctgttctagttctattgaattatcacataatacactacgtacatttt
cgtgattttaaacataaaggataaaataaaataaaaagttaaaaacatta
gcgCAGGATGTTCTAAGACGCTGGTGAAATGGAAAGCACAAAAGTAGGTG
TAGACTCAAATAGCAAAGTGTAAGATTGAGCTGAAACGAGACGATGACAT
GCCAAGCTAAGTAGAAAATTGTAGGAATTATagggaaaaatatttgtaat
tttgaaattaaaaactattaaaataaatattttcatatcaaaatgtaaga
taaaaatattaagtTGAAATATTAAAACCATCCATGTCCATGATTCCACG
ATGGTGATGAGGCCAGCAGTAAATAAATAACGTGGCACAAAAATTGTTCA
AACAGAAGACAAAGCATGGGGACACAAGACACGAAGAGTAAAATCGGAAG
AGACAAAAAGGACTAGCTCAGgatagaaaaagtaaaaatcaaaaagaaat
aaaaaaaaaattccacaaGTTAAAATTCGTATTGGAAATGCTAAGGCTAA
ATTTATCAGGGTCTTCTTTATTGACGATATGGGTTGGTAAGGCATTCCAC
AACCTAATTGTTGAAGGGGCATAGCTGTATTCATACGACTGGATTCGTGC
AATTATTGGTATAATTTTTAAGTTAGCGGTACGAGCACGACGTACAAGAG
AAGATAAACAAGCAATTCGACCGTGTAGAATCTTATGCATGTAGTTCAGT
TTAGTTTCAAGCCGTCTTTGCTGGAGGGTCTTAAGGTTAAGATTACGAAT
CATGGTGGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACATATAAA
TCTGGATGCCTTGCGTTGGACCATTTCTAATTGGTTGATGTTTGCTGAAG
TATGAGGATCCCAGACAACTGATGCGTATTCAAGAATCGGTCTCACATAG
GTACGATAAGCTTGGAGCTTGATTACTTGGTTACATGTATGCAGGTTACG
CTGGAGGAAGCATCTCATTTGTTTGGCTTTTTTCGAGGTGTAGTTTTGAC
ATGGGTATTCCAAGATAACTTTTTGTGTATAAATACGCCGAGGTATTTTG
CTGAGTCAACAAGCTCAAGGATCTGGTTATGCCTGGTTATGCATGGAATA
GTCAGATAGGATGATTTTGCGCTTATTGGTGACTCTGAGGACCTTGCATT
TGTTTGGATTGAATTTGATGGACCAATGCCTTTCCCACTCAATCAGATTA
TTTAGATCATGTTGAAGTTGATAAGTGTCATTGACTGGTTCAATTTTTCT
GTATAATAGAGCATCATCCGCAAAAAGACGTATTTGAGAGTTCACACACA
ATGGTAGATCGTTTATGTATACTACTACTAGAAATAGTAGTGGTCCCAAT
ACTGTCCCTTGGGGAACACCAGATAATACCGTGGCTTTGTCTGAGCTCTT
GCTGTTAATAACTACAGTTTGCGTTCTGTTTGCAAGGTAATTTCTGATCC
AGGAGAGAGTATTACCTCTTATTCCGTAGTGATCAAGCTTAATGCACAGT
TTGTCATGGTCTACCTTGTCAAATGCTTTGGAAAAATCAAGCAAGATGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTGaaattctatcagaagcttgtgTTAGACT
TGAAGTATATAGATTTGGAAGTAAGTGCAGTCTGTCAGGTGTATTTTCAT
TCAAGTAAAGATTACTCAAGCtcacaaaaataaaataggGCACctgcttt
tttcctttttcactcAAATAAATCGCGAtcgtttgtttgattttcaCTAT
AAGGAAATTTAGTATTTCAAGCATTCTTGAGTATTTATATGATCACGATC
ATGGTTTTTGGAGATAGAGGCTTAAATTCAATTATGCCTGAGATGATTCA
TTATACTAGCTACGTACAGAAACCTTTTGCTTTTAAGTTGAAAGACGAAT
GTCCGACCCCGCATAAAAATcaatcggacatgtccgacccaatttacttt
aaaagccttaggacatgtccgacccaaatcaatttttgatcggacaatgt
gtccgaccacctaaatattgttatttcgagccctgcaattagatgaaaaa
atattagATTTTTTCCAGTTAATGCTTATTAtatttttcctcctttttac
AGTTCTTCATCCAATATGTTTGAAGAGTTTAATCGTATGGATCAAATGAT
GTCATCTTTTGGGATGCCAGGAGGCAGGATGGGACAGCCACCACACCACT
CTGATATAGGTGACTCTTCTAATAGACAGCAAAGGTAATGCAATTTGTAA
TGTacaaactaaaaaaatattgaatataaaAATTGGGCCAGAATATATGA
GACCAAGCTAAAGAAAGTAGGTCTTagtaattttgcattttttcccATTT
CTTTTTCCCAAATACATAAGCTCCAAGTACTTTAGGATATTTATTTGATG
TCAAGATGTTAAAAACTGTACGTAAATATTTGGTGGGTCACTGTCACCTG
GTATCTATTTTCCAAGAAAGGTGTTATTTGAAGCTAACCAGCTTATAATT
TATAAAAGTAAGAAGGAGGGTACGAAAACTTTCTACCATAGAAATCATCA
AAGACGTCCacaccaacaacaacaacaccagAACGAGATGTTGTCACCTA
TTGGTAGAGGAGGTATGTTTGGTGGTGGAAGTGTGTTCCAAGAGATGAAT
CGTATGATGGTATGTATAAATTCGCAAATATTTCAGTTTCAGCCGTGTTT
GAAGAATTAACTGGAATAATACAATTTGTACTTCTCGCTATACCATGGAT
TACAAGTTTACCTACCCCCCTCACCACCACCAACATTAGCTTCGGTTGAC
CCTAAGAAGTTCCAAACTACCCGGGAAAGCACCTTTTATCTTAACTAAGC
TTGGAAGGCCCTGAACCCTGGTTTGTTCCAACAGATGGAATTTGTTCATT
CTTCTGCTTATTTCCATTTTTCGCAGGCTGACATGGAGAGAGGCTCTTCG
TCATCCACTGGGCAATTTTATTCGTCATCAAAAGTCATGTCCTACTCAAG
AGGTGGTGAAGGAGACCAACCAAAATATTACGAAGCATCCTCTCAAATTA
CTCAAGGGCCAGATGGTGTAAGTATAAGAATCACACTTTACCGAACTTGA
GTCATTTCTAATCATCTCATAATAGATCATCTATTCTGTGCATACCACGA
TCTGCTCTAAAGAGATATAGCCAATGTGACATGGCTTTCATAGTGCATAC
GTGCCAGTGCGGAGTTGTCAGAATCTTTTCGGAAATTAGATCATTTTCAT
CGAAAAATTAAAAGTGTTTTATTTAGGTCTGTTTAATCAAAGTAAGCTTG
ctcattattatttttatttaaagctAATCTTTTGTTACTCTGACTTTCTA
GTTACGTCAAACACGAAAAAGCGAACGAAACTCAGAGACTGGGACCGACA
GAATGGCTATTGGTCACCATATACGTATGTTATAGCTTCTATACATTTCT
TATGTCAAATGAAAAATACACATTGGTATTCCATTGACATGCTTTGATTT
CAACTTaagaatttttccatttttgaatttgaaaattgttcCACTAGGAT
CAAGTCGTGTATGTATCTTCTTACTCCTTTTAGGTATTTCCAGTCGATAA
AAGGTGATAAAACAATGACGTTTCCTCTTTTTTTAGATGATCGAGGTCAC
GTGGTCGAACGTATTCGAAACAATCGAACCAATGAacgagaagaaaaaca
aaatttcattaatcTTGATGAAGGTACGTCACTTCTGTTTTTCGTTAGTT
GCCATTAATATTTTCcttactaactgattttactaTTATCACAATGTTTA
TACTGTTATTACAAATAAAGCGCCCTGCTAACTTAGCGAAAAGCTACCAT
TACGGAATAAAAACGTTCAAATTTGAAGGCTGAGTTGATTTCTTATGcaa
tttgaaagttttattCATAATGAAGTTTGGATTACTCTCGAGTCGAGTTT
CTGATAAACGGAGGGCATAAAACTTGACTAAAGGAAATTTTCACTGAGGT
TAGGGGGTAAATAATTGGTATAtttaatcaatttaatttaat

Coding sequence (CDS) from alignment at sc0004594:39..6030+

>TCONS_00043798 ID=TCONS_00043798|Name=TCONS_00043798|organism=Clytia hemisphaerica|type=CDS|length=3762bp|location=Sequence derived from alignment at sc0004594:39..6030+ (Clytia hemisphaerica)
ATGTTTGGAAGATCAATGTTTGGGGATGATCCCTTTTTCAGTTCTTCATC
CAATATGTTTGAAGAGTTTAATCGTATGGATCAAATGATGTCATCTTTTG
GGATGCCAGGAGGCAGGATGGGACAGCCACCACACCACTCTGATATAGGT
GACTCTTCTAATAGACAGCAAAGAAATCATCAAAGACGTCCacaccaaca
acaacaacaccagAACGAGATGTTGTCACCTATTGGTAGAGGAGGTATGT
TTGGTGGTGGAAGTGTGTTCCAAGAGATGAATCGTATGATGGCTGACATG
GAGAGAGGCTCTTCGTCATCCACTGGGCAATTTTATTCGTCATCAAAAGT
CATGTCCTACTCAAGAGGTGGTGAAGGAGACCAACCAAAATATTACGAAG
CATCCTCTCAAATTACTCAAGGGCCAGATGGTTTACGTCAAACACGAAAA
AGCGAACGAAACTCAGAGACTGGGACCGACAGAATGGCTATTGGTCACCA
TATACATGATCGAGGTCACGTGGTCGAACGTATTCGAAACAATCGAACCA
ATGAacgagaagaaaaacaaaatttcattaatcTTGATGAAGGTACGTCA
CTTCTGTTTTTCGTTAGTTGCCATTAAATGTTTGGAAGATCAATGTTTGG
GGATGATCCCTTTTTCAGTTCTTCATCCAATATGTTTGAAGAGTTTAATC
GTATGGATCAAATGATGTCATCTTTTGGGATGCCAGGAGGCAGGATGGGA
CAGCCACCACACCACTCTGATATAGGTGACTCTTCTAATAGACAGCAAAG
AAATCATCAAAGACGTCCacaccaacaacaacaacaccagAACGAGATGT
TGTCACCTATTGGTAGAGGAGGTATGTTTGGTGGTGGAAGTGTGTTCCAA
GAGATGAATCGTATGATGGCTGACATGGAGAGAGGCTCTTCGTCATCCAC
TGGGCAATTTTATTCGTCATCAAAAGTCATGTCCTACTCAAGAGGTGGTG
AAGGAGACCAACCAAAATATTACGAAGCATCCTCTCAAATTACTCAAGGG
CCAGATGGTTTACGTCAAACACGAAAAAGCGAACGAAACTCAGAGACTGG
GACCGACAGAATGGCTATTGGTCACCATATACATGATCGAGGTCACGTGG
TCGAACGTATTCGAAACAATCGAACCAATGAacgagaagaaaaacaaaat
ttcattaatcTTGATGAAGGTACGTCACTTCTGTTTTTCGTTAGTTGCCA
TTAAATGTTTGGAAGATCAATGTTTGGGGATGATCCCTTTTTCAGTTCTT
CATCCAATATGTTTGAAGAGTTTAATCGTATGGATCAAATGATGTCATCT
TTTGGGATGCCAGGAGGCAGGATGGGACAGCCACCACACCACTCTGATAT
AGGTGACTCTTCTAATAGACAGCAAAGAAATCATCAAAGACGTCCacacc
aacaacaacaacaccagAACGAGATGTTGTCACCTATTGGTAGAGGAGGT
ATGTTTGGTGGTGGAAGTGTGTTCCAAGAGATGAATCGTATGATGGCTGA
CATGGAGAGAGGCTCTTCGTCATCCACTGGGCAATTTTATTCGTCATCAA
AAGTCATGTCCTACTCAAGAGGTGGTGAAGGAGACCAACCAAAATATTAC
GAAGCATCCTCTCAAATTACTCAAGGGCCAGATGGTTTACGTCAAACACG
AAAAAGCGAACGAAACTCAGAGACTGGGACCGACAGAATGGCTATTGGTC
ACCATATACATGATCGAGGTCACGTGGTCGAACGTATTCGAAACAATCGA
ACCAATGAacgagaagaaaaacaaaatttcattaatcTTGATGAAGGTAC
GTCACTTCTGTTTTTCGTTAGTTGCCATTAAATGTTTGGAAGATCAATGT
TTGGGGATGATCCCTTTTTCAGTTCTTCATCCAATATGTTTGAAGAGTTT
AATCGTATGGATCAAATGATGTCATCTTTTGGGATGCCAGGAGGCAGGAT
GGGACAGCCACCACACCACTCTGATATAGGTGACTCTTCTAATAGACAGC
AAAGAAATCATCAAAGACGTCCacaccaacaacaacaacaccagAACGAG
ATGTTGTCACCTATTGGTAGAGGAGGTATGTTTGGTGGTGGAAGTGTGTT
CCAAGAGATGAATCGTATGATGGCTGACATGGAGAGAGGCTCTTCGTCAT
CCACTGGGCAATTTTATTCGTCATCAAAAGTCATGTCCTACTCAAGAGGT
GGTGAAGGAGACCAACCAAAATATTACGAAGCATCCTCTCAAATTACTCA
AGGGCCAGATGGTTTACGTCAAACACGAAAAAGCGAACGAAACTCAGAGA
CTGGGACCGACAGAATGGCTATTGGTCACCATATACATGATCGAGGTCAC
GTGGTCGAACGTATTCGAAACAATCGAACCAATGAacgagaagaaaaaca
aaatttcattaatcTTGATGAAGGTACGTCACTTCTGTTTTTCGTTAGTT
GCCATTAAATGTTTGGAAGATCAATGTTTGGGGATGATCCCTTTTTCAGT
TCTTCATCCAATATGTTTGAAGAGTTTAATCGTATGGATCAAATGATGTC
ATCTTTTGGGATGCCAGGAGGCAGGATGGGACAGCCACCACACCACTCTG
ATATAGGTGACTCTTCTAATAGACAGCAAAGAAATCATCAAAGACGTCCa
caccaacaacaacaacaccagAACGAGATGTTGTCACCTATTGGTAGAGG
AGGTATGTTTGGTGGTGGAAGTGTGTTCCAAGAGATGAATCGTATGATGG
CTGACATGGAGAGAGGCTCTTCGTCATCCACTGGGCAATTTTATTCGTCA
TCAAAAGTCATGTCCTACTCAAGAGGTGGTGAAGGAGACCAACCAAAATA
TTACGAAGCATCCTCTCAAATTACTCAAGGGCCAGATGGTTTACGTCAAA
CACGAAAAAGCGAACGAAACTCAGAGACTGGGACCGACAGAATGGCTATT
GGTCACCATATACATGATCGAGGTCACGTGGTCGAACGTATTCGAAACAA
TCGAACCAATGAacgagaagaaaaacaaaatttcattaatcTTGATGAAG
GTACGTCACTTCTGTTTTTCGTTAGTTGCCATTAAATGTTTGGAAGATCA
ATGTTTGGGGATGATCCCTTTTTCAGTTCTTCATCCAATATGTTTGAAGA
GTTTAATCGTATGGATCAAATGATGTCATCTTTTGGGATGCCAGGAGGCA
GGATGGGACAGCCACCACACCACTCTGATATAGGTGACTCTTCTAATAGA
CAGCAAAGAAATCATCAAAGACGTCCacaccaacaacaacaacaccagAA
CGAGATGTTGTCACCTATTGGTAGAGGAGGTATGTTTGGTGGTGGAAGTG
TGTTCCAAGAGATGAATCGTATGATGGCTGACATGGAGAGAGGCTCTTCG
TCATCCACTGGGCAATTTTATTCGTCATCAAAAGTCATGTCCTACTCAAG
AGGTGGTGAAGGAGACCAACCAAAATATTACGAAGCATCCTCTCAAATTA
CTCAAGGGCCAGATGGTTTACGTCAAACACGAAAAAGCGAACGAAACTCA
GAGACTGGGACCGACAGAATGGCTATTGGTCACCATATACATGATCGAGG
TCACGTGGTCGAACGTATTCGAAACAATCGAACCAATGAacgagaagaaa
aacaaaatttcattaatcTTGATGAAGGTACGTCACTTCTGTTTTTCGTT
AGTTGCCATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027472XLOC_027472Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043798-proteinTCONS_00043798-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043798-exon-sc0004594-1491911889:39..184TCONS_00043798-exon-sc0004594-1491911889:39..184Clytia hemisphaericaexon
TCONS_00043798-exon-sc0004594-1510915933:39..184TCONS_00043798-exon-sc0004594-1510915933:39..184Clytia hemisphaericaexon
TCONS_00043798-exon-sc0004594-1575043694:39..184TCONS_00043798-exon-sc0004594-1575043694:39..184Clytia hemisphaericaexon
TCONS_00043798-exon-sc0004594-1491911889:4091..4222TCONS_00043798-exon-sc0004594-1491911889:4091..4222Clytia hemisphaericaexon
TCONS_00043798-exon-sc0004594-1510915933:4091..4222TCONS_00043798-exon-sc0004594-1510915933:4091..4222Clytia hemisphaericaexon
TCONS_00043798-exon-sc0004594-1575043694:4091..4222TCONS_00043798-exon-sc0004594-1575043694:4091..4222Clytia hemisphaericaexon
TCONS_00043798-exon-sc0004594-1491911889:4530..4647TCONS_00043798-exon-sc0004594-1491911889:4530..4647Clytia hemisphaericaexon
TCONS_00043798-exon-sc0004594-1510915933:4530..4647TCONS_00043798-exon-sc0004594-1510915933:4530..4647Clytia hemisphaericaexon
TCONS_00043798-exon-sc0004594-1575043694:4530..4647TCONS_00043798-exon-sc0004594-1575043694:4530..4647Clytia hemisphaericaexon
TCONS_00043798-exon-sc0004594-1491911889:4915..5055TCONS_00043798-exon-sc0004594-1491911889:4915..5055Clytia hemisphaericaexon
TCONS_00043798-exon-sc0004594-1510915933:4915..5055TCONS_00043798-exon-sc0004594-1510915933:4915..5055Clytia hemisphaericaexon
TCONS_00043798-exon-sc0004594-1575043694:4915..5055TCONS_00043798-exon-sc0004594-1575043694:4915..5055Clytia hemisphaericaexon
TCONS_00043798-exon-sc0004594-1491911889:5340..5412TCONS_00043798-exon-sc0004594-1491911889:5340..5412Clytia hemisphaericaexon
TCONS_00043798-exon-sc0004594-1510915933:5340..5412TCONS_00043798-exon-sc0004594-1510915933:5340..5412Clytia hemisphaericaexon
TCONS_00043798-exon-sc0004594-1575043694:5340..5412TCONS_00043798-exon-sc0004594-1575043694:5340..5412Clytia hemisphaericaexon
TCONS_00043798-exon-sc0004594-1491911889:5625..6030TCONS_00043798-exon-sc0004594-1491911889:5625..6030Clytia hemisphaericaexon
TCONS_00043798-exon-sc0004594-1510915933:5625..6030TCONS_00043798-exon-sc0004594-1510915933:5625..6030Clytia hemisphaericaexon
TCONS_00043798-exon-sc0004594-1575043694:5625..6030TCONS_00043798-exon-sc0004594-1575043694:5625..6030Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004594supercontigsc0004594:39..6030 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
31.9994	32.9397	11.9109	8.99549	29.4651	22.3071	23.8384	24.4825	29.2293	24.5542	34.6617	30.0273	33.6607	36.2926	27.9994	23.42	17.6979	24.6527	26.5832	21.782	23.3257	23.5655	45.1178	41.3131	58.8304	62.2856	27.6538	35.9792	30.1771	33.5182
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019376Myeloid_leukemia_factor
Blast
[Close]
BLAST of TCONS_00043798 vs. Swiss-Prot (Human)
Match: MLF1 (Myeloid leukemia factor 1 OS=Homo sapiens GN=MLF1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.425e-16
Identity = 39/87 (44.83%), Postives = 65/87 (74.71%), Query Frame = 1 
Query:  454 VMSYSRGGEGDQPKYYEASSQITQGPDGLRQTRKSERNSETGTDRMAIGHHIHDRGHVVXXXXXXXXXXXXXXXXFINLDEGTSLLF 714
            VM+YS+ G+ + PK ++AS+Q  + P G+++TRK+ R+S++G ++MAIGHHIHDR HV+++ +N +T + E  Q FIN++E  +  F
Sbjct:  110 VMTYSKIGD-EPPKVFQASTQTRRAPGGIKETRKAMRDSDSGLEKMAIGHHIHDRAHVIKKSKNKKTGDEEVNQEFINMNESDAHAF 195
The following BLAST results are available for this feature:
BLAST of TCONS_00043798 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MLF14.425e-1644.83Myeloid leukemia factor 1 OS=Homo sapiens GN=MLF1 ... [more]
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