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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043795 ID=TCONS_00043795|Name=TCONS_00043795|organism=Clytia hemisphaerica|type=transcript|length=857bp
NNCATCACAAGTTGATCTGTCCGGTCCATATTTATCCTTTTCACCTAGTC
ACAAGCGCACAACTGTGAAGATTTGGCTTGTTGTTATCTGCTGTTCTACA
ACCTCAGCTATATCTATTAAAGTGATGGACGATTATTCTACTGATTGGTT
CATATTATCATTCACCCGATTTGCTTGCGACCATGGATATCCGAAGAAGC
TCTACTGTGATGGTGGAAGTCAACTGATCAAAGGATGTAACAACATGAAG
TTGGACTTTGTCGATCTTCAATCCAAATTACATCGAAACAAAGCCATCGA
CTTTTCTATATGCCCAGTTGGCGGGCATAACATGCATGGAAAAGTTGAAC
GAAAAATCCAAGAAGTCAACAAATCGTTACAGAAGTTCATCAACAATCAG
CGACTATCACTCATGCAATGGGAAACGTTAGCTGCTGTCATTGCTAACTC
AATCAATGATCTGCCAATTTGTGTTGGTAGTAAAACTGATCTGGAGAATC
TCGATCTGATCACGCCTAATCGCCTACTCTTGGGACGTAATAACGAAAGA
AGCCCCATCGGTGACATGATTCTATCAAACAACNGGAGAATCTCGATCTC
TGATCACGCCTAATCGCCTACTCTTGGGACGTAATAACGAAAGAAGCATT
ATTAAATTGGTAAATGGAATTTGCTGAATTGAATATTTAATAATAATTTG
CATTTCACTGTGGATTTACCCAGCTGGTAATCCACTCATTTCACTGGTCA
TTTTCACAGCAATCACATTGGGCCAGCCGtttAAACGCAAAGATATCAAT
CCTTCAATCAATATCTTGTTACAAACCCTCTCAAGTGTGTTGCACTATTC
Cacaata Run BLAST on NCBI protein sequence of TCONS_00043795-protein >TCONS_00043795-protein ID=TCONS_00043795-protein|Name=TCONS_00043795-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
XSQVDLSGPYLSFSPSHKRTTVKIWLVVICCSTTSAISIKVMDDYSTDWF
ILSFTRFACDHGYPKKLYCDGGSQLIKGCNNMKLDFVDLQSKLHRNKAID
FSICPVGGHNMHGKVERKIQEVNKSLQKFINNQRLSLMQWETLAAVIANS
INDLPICVGSKTDLENLDLITPNRLLLGRNNERSPIGDMILSNNXRISIS
DHA Run BLAST on NCBI transcript from alignment at sc0004593:1139..2466+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043795 ID=TCONS_00043795|Name=TCONS_00043795|organism=Clytia hemisphaerica|type=transcript|length=1328bp|location=Sequence derived from alignment at sc0004593:1139..2466+ (Clytia hemisphaerica)
NNCATCACAAGTTGATCTGTCCGGTCCATATTTATCCTTTTCACCTAGTC
ACAAGCGCACAACTGTGAAGATTTGGCTTGTTGTTATCTGCTGTTCTACA
ACCTCAGCTATATCTATTAAAGTGATGGACGATTATTCTACTGATTGGTT
CATATTATCATTCACCCGATTTGCTTGCGACCATGGATATCCGAAGAAGC
TCTACTGTGATGGTGGAAGTCAACTGATCAAAGGATGTAACAACATGAAG
TTGGACTTTGTCGATCTTCAATCCAAATTACATCGAAACAAAGCCATCGA
CTTTTCTATATGCCCAGTTGGCGGGCATAACATGCATGGAAAAGTTGAAC
GAAAAATCCAAGAAGTCAACAAATCGTTACAGAAGTTCATCAACAATCAG
CGACTATCACTCATGCAATGGGAAACGTTAGCTGCTGTCATTGCTAACTC
AATCAATGATCTGCCAATTTGTGTTGGTAGTAAAACTGATCTGGAGAATC
TCGATCTGATCACGCCTAATCGCCTACTCTTGGGACGTAATAACGAAAGA
AGCCCCATCGGTGACATGATTCTATCAAACAACNGGAGAATCTCGATCTC
TGATCACGCCTAATCGCCTACTCTTGGGACGTAATAACGAAAGAAGCATT
ATTAAATTGGTAAATGGAATTTGCTGAATTGAATATTTAATAATAATTTG
CATTTCACTGTGGATTTACCCAGCTGGTAATCCACTCATTTCACTGGTCA
TTTTCACAGCAATCACATTGGGCCAGCCGGTAAGCTTTTTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTGGCCCAGCCGGTAAGCTTTTTGTTTGCATTTCTcact
ttttgttttctcttcTCCTAGTCTTAGGTTGGCTCAACTTTAGGCTCTGC
ATTTGCCCTTTTGGCTTCTACCCATTGCTGTCCTAGGTTAGGTTAGGTTA
AGACTTAGTAATTTTTTCTAAGATTCTATCATACTTTTATTCTTTCGTAT
CATTTTCTGTTCACTCAAATTGTTTCTCAAATTAGTCTAAGTTTCATAAA
TCAATTATCAATTTAAGCTCCTAATTTTGTTATTTAGTCactattttcat
ttattttatcaaTTCAAATACTTATTATTccttaatttattttcattcag
tttAAACGCAAAGATATCAATCCTTCAATCAATATCTTGTTACAAACCCT
CTCAAGTGTGTTGCACTATTCCacaata Coding sequence (CDS) from alignment at sc0004593:1139..2466+ >TCONS_00043795 ID=TCONS_00043795|Name=TCONS_00043795|organism=Clytia hemisphaerica|type=CDS|length=612bp|location=Sequence derived from alignment at sc0004593:1139..2466+ (Clytia hemisphaerica)
NCATCACAAGTTGATCTGTCCGGTCCATATTTATCCTTTTCACCTAGTCA
CAAGCGCACAACTGTGAAGATTTGGCTTGTTGTTATCTGCTGTTCTACAA
CCTCAGCTATATCTATTAAAGTGATGGACGATTATTCTACTGATTGGTTC
ATATTATCATTCACCCGATTTGCTTGCGACCATGGATATCCGAAGAAGCT
CTACTGTGATGGTGGAAGTCAACTGATCAAAGGATGTAACAACATGAAGT
TGGACTTTGTCGATCTTCAATCCAAATTACATCGAAACAAAGCCATCGAC
TTTTCTATATGCCCAGTTGGCGGGCATAACATGCATGGAAAAGTTGAACG
AAAAATCCAAGAAGTCAACAAATCGTTACAGAAGTTCATCAACAATCAGC
GACTATCACTCATGCAATGGGAAACGTTAGCTGCTGTCATTGCTAACTCA
ATCAATGATCTGCCAATTTGTGTTGGTAGTAAAACTGATCTGGAGAATCT
CGATCTGATCACGCCTAATCGCCTACTCTTGGGACGTAATAACGAAAGAA
GCCCCATCGGTGACATGATTCTATCAAACAACNGGAGAATCTCGATCTCT
GATCACGCCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043795-exon-sc0004593-1491911889:1139..1917 | TCONS_00043795-exon-sc0004593-1491911889:1139..1917 | Clytia hemisphaerica | exon |
| TCONS_00043795-exon-sc0004593-1510915933:1139..1917 | TCONS_00043795-exon-sc0004593-1510915933:1139..1917 | Clytia hemisphaerica | exon |
| TCONS_00043795-exon-sc0004593-1575043694:1139..1917 | TCONS_00043795-exon-sc0004593-1575043694:1139..1917 | Clytia hemisphaerica | exon |
| TCONS_00043795-exon-sc0004593-1491911889:2389..2466 | TCONS_00043795-exon-sc0004593-1491911889:2389..2466 | Clytia hemisphaerica | exon |
| TCONS_00043795-exon-sc0004593-1510915933:2389..2466 | TCONS_00043795-exon-sc0004593-1510915933:2389..2466 | Clytia hemisphaerica | exon |
| TCONS_00043795-exon-sc0004593-1575043694:2389..2466 | TCONS_00043795-exon-sc0004593-1575043694:2389..2466 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004593 | supercontig | sc0004593:1139..2466 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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