TCONS_00043792 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043792
Unique NameTCONS_00043792
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043792 ID=TCONS_00043792|Name=TCONS_00043792|organism=Clytia hemisphaerica|type=transcript|length=346bp
GCTNCACAATTTGAGAGGCCATCCTAACCACCCAGTTCTTCCATCCATcg
gaacaacaacaacagccaACCATTATCCTACACAGCAACAACATCCTTGG
CAACAACAGAGACCATTAATGGTTGCCAATAATCAACATTTTAATGAGGT
GCATAcgcttaagtggattaatttttgaccTGGATTTTTTACTCGCGAAT
AGAGAATCTGAAGTTTTAGCGTAGaataaatttcgaaaataaACTCTAGT
TTAGACGACTGATTTTACCGTGCCTGTTCTAATTGAAGGCAATCTTGGCT
TGAAAAACTTGTTgaaagaagccattgcattgacgtcaaaagtaGA
Run BLAST on NCBI

transcript from alignment at sc0004588:447..792

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043792 ID=TCONS_00043792|Name=TCONS_00043792|organism=Clytia hemisphaerica|type=transcript|length=346bp|location=Sequence derived from alignment at sc0004588:447..792 (Clytia hemisphaerica)
TCtacttttgacgtcaatgcaatggcttctttcAACAAGTTTTTCAAGCC
AAGATTGCCTTCAATTAGAACAGGCACGGTAAAATCAGTCGTCTAAACTA
GAGTttattttcgaaatttattCTACGCTAAAACTTCAGATTCTCTATTC
GCGAGTAAAAAATCCAggtcaaaaattaatccacttaagcgTATGCACCT
CATTAAAATGTTGATTATTGGCAACCATTAATGGTCTCTGTTGTTGCCAA
GGATGTTGTTGCTGTGTAGGATAATGGTtggctgttgttgttgttccgAT
GGATGGAAGAACTGGGTGGTTAGGATGGCCTCTCAAATTGTGNAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027467XLOC_027467Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043792-exon-sc0004588-1491911889:447..792TCONS_00043792-exon-sc0004588-1491911889:447..792Clytia hemisphaericaexon
TCONS_00043792-exon-sc0004588-1510915933:447..792TCONS_00043792-exon-sc0004588-1510915933:447..792Clytia hemisphaericaexon
TCONS_00043792-exon-sc0004588-1575043694:447..792TCONS_00043792-exon-sc0004588-1575043694:447..792Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004588supercontigsc0004588:447..792 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.252528	0	0	0.349223	0	0	0	2.83688	2.70302	2.62362	3.79426	1.03336	0.894296	0	0	0.388802	0.199255	0	0.288062	0.250378	0.366377	0.296919	0	0	0.248139	0.355087	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043792 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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