TCONS_00043785 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043785
Unique NameTCONS_00043785
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length536

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043785 ID=TCONS_00043785|Name=TCONS_00043785|organism=Clytia hemisphaerica|type=transcript|length=536bp
GCCAAATCTTGCATATTTGAACAAAGTAGTCTTACTGCCAAGAATGTTTG
CAAAGAAGCTCTAGGTAGAACGTTGAAATGTTAGGGTGGAAAGTTTACTT
TTGAGTTGTTCTTAACTTCAAAATGCACATTACCGTAGAACCGCTCAACA
TTCCCAATAAAGGCTTTACTTTCCAAGGCGACaaagcaaaaataatttaa
aaaatctggggttttgaaggaatttgatttcaaatttaccGTAAGATTGA
CTTTCCGATATGAGGTTGGATAatataaatctttttctttccgtctaaaa
ttatacaatctTATCTCCCTAATATTGCAAAATTGACTGCACAATATATT
AGCGAATATAACAGGGCCGTTCCCCCATTAAGTTTAAAATGCCACAGGCC
GTTTGGGCGATCATCAAAATTATGTTCTGTTCGGCATccataaaacatct
tcaaatccagtcggttgGTCGGTAGTATATTTCGTTGGGTTTTTAACATT
TAGTAAATCTCTAAATATTATGTCggcaatcaacaa
Run BLAST on NCBI

transcript from alignment at sc0004581:1693..2228

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043785 ID=TCONS_00043785|Name=TCONS_00043785|organism=Clytia hemisphaerica|type=transcript|length=536bp|location=Sequence derived from alignment at sc0004581:1693..2228 (Clytia hemisphaerica)
ttgttgattgccGACATAATATTTAGAGATTTACTAAATGTTAAAAACCC
AACGAAATATACTACCGACcaaccgactggatttgaagatgttttatggA
TGCCGAACAGAACATAATTTTGATGATCGCCCAAACGGCCTGTGGCATTT
TAAACTTAATGGGGGAACGGCCCTGTTATATTCGCTAATATATTGTGCAG
TCAATTTTGCAATATTAGGGAGATAagattgtataattttagacggaaag
aaaaagatttatatTATCCAACCTCATATCGGAAAGTCAATCTTACggta
aatttgaaatcaaattccttcaaaaccccagattttttaaattatttttg
ctttGTCGCCTTGGAAAGTAAAGCCTTTATTGGGAATGTTGAGCGGTTCT
ACGGTAATGTGCATTTTGAAGTTAAGAACAACTCAAAAGTAAACTTTCCA
CCCTAACATTTCAACGTTCTACCTAGAGCTTCTTTGCAAACATTCTTGGC
AGTAAGACTACTTTGTTCAAATATGCAAGATTTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027460XLOC_027460Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043785-exon-sc0004581-1491911889:1693..2228TCONS_00043785-exon-sc0004581-1491911889:1693..2228Clytia hemisphaericaexon
TCONS_00043785-exon-sc0004581-1510915933:1693..2228TCONS_00043785-exon-sc0004581-1510915933:1693..2228Clytia hemisphaericaexon
TCONS_00043785-exon-sc0004581-1575043694:1693..2228TCONS_00043785-exon-sc0004581-1575043694:1693..2228Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004581supercontigsc0004581:1693..2228 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.216989	0	1.22843	0.84128	0.292622	0.231234	0.697435	0.261172	0.0914263	0	0	0.0722568	0.0721564	0	0.18482	0.132227	0	0	0	0.120687	0.104899	0.306996	0	0	0	0	0.148768	0.317538	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043785 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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