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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043780 ID=TCONS_00043780|Name=TCONS_00043780|organism=Clytia hemisphaerica|type=transcript|length=2051bp
TGATTTAACTAAAGATGCAAATCAGAAGGTACTCAGGAACAATGTTCATT
CAAGAATACTTTTATTCTCACCCAttcatttgcaatttttcaattaaaag
tcttaaaaagataaataatttttaatcaatttgaaagaatttaATAGAAA
ATTTTCACATCTACAACATTTTACTGCCATAAAATTCACCTTAAAAAGTA
ATACTTCAGCTTGGAAAATCTTCTTTGTCCTTTTAAGTCGACTGACCACC
AAATAAGTGAGGATAACACAAGTGAGACTGACGCAGAAGATTCAATAGAC
AAAGAAAACGAAGAAACAAAGACGACTGAGCACCAAATAAGTGACGATAA
TGCAAGTGAAATATACGCAGAAGATTCAAGTGAAGAAATAGAAAAGACAG
AGacTGGGACTCGAAAAAGATTCAAATTCACATTGAAGGAAGAAGCGCCA
ATAGACACCAAAGTCAGGCGGATAGAACGACTAAAAAGAATAAATGGACA
GCAAGCGGATACAATTGAGCAACTGAAAGAGAAAAATGCATCTCTAACCC
TTCGAAACGCTGCCTTCACCCGTTTGAAGATAATAGAACAGCTAGGTGAA
AGGCGCTCTACTTTAATGGTAGACGCCTCACTTTTTTCTAATACTTTCCA
TGCTGGTGATGCCATATTACAACAAGAAGATTCCGATTTGCTCGACCCCT
CCACTTTTGAAGGGTTGGAAGGAAAGATGTTGATTCCTGGTCTGTTTTGC
TTTGCCAAAAAAGTCACCCTCTCCAACGGAGAATCTGTTGTACTGAAAAC
ACATAAGCCAGAGAGTTTCGGTCTTCAGAGCTTAGCCGTCCTAAGTCACG
AACATCGTCTCCTAAAGTTTGTTGGAAGCCACGCAAATTTGGTTTCGACA
GTTGGTTTGGTCCCCACAAACGGGATATTTGCTCATGTCATGAAATTTGA
GTATGGCATGAGTCTCTTTGAAATGTCACAAAAATCTATTTCCATAAGTT
CTATCTCAAATTTCAAATCCATCATCGAGGGAGTCGCTGATGGactaaat
tttttgtttgataaagGGGTCATTCATAACCATCTTATTAATGACAACGT
TATTGTTAGAGATGGTTCCCCTAGAATTGTTGGATTTACGTTTTCATGCA
GGGTGTATTCCACCAAAAACAATGTACAAGAAGTCTTAAAGAAGTTTCAG
GGTTCAAATCATTTGGCTCCCGAACTATTCAACGGGTCTTGTGCTAGTTA
TTCGACTGATGTTTATGCGTTTGGCGTGCTAGTACAAAGcatcttaaaaa
tgaaattcggCTTTACAATGAACACAACCTTCAAGTCAAGAGTTGACTGT
TATGCTGACAGCTGTCTGTATACAGCAGACCTAAGGCCACCGCACAAGTT
TCTGGCTTCGAAAACAAAACGGATGCTTTATTACAAAATTTGATATTAGA
TATGCATTTTCCTGATTCCTTCTTTAGGCTATAAGTAGTAATTCATCATT
CCTgcataactcgaaaattttcttGAGAAAATGTTACTACCTTTTCGAGA
ACCCTGCTGTTTCATCGAAACTGGTATTATTAGAAAGAATGCAGATTTAT
AAAAGATGAACAATTAATGTTTCAAATAGTAATAGTTATGGTAcatgata
tatttttcgagtttaGATTTTCGTCATATTTTTCGAGCCTTTAAGAAAGT
TTTGgcgcgtttttagccaatcaaattgctaaTTGGCGATAAATTGAGGT
AGTTAATCTGATTCAGTTCATAGGGAACAATAGTTTCTCGTTTTCTTCGA
AATTTTCAGGCCTAAATgttcctaaatatttttttagaccaTAATGACAA
GTACCATAACGACCATAGTACTTTTTGAAATCCAAGCTTAAAATTTATAT
GCTTCGAGGAAATTTATCATGTacttttataattttgtttCTGCTCCGTT
GAAGATAAACTGtttcattttaatgataatgagGGTTTCTGACCAATACC
TAGATTTTTGAACTTGGAAGACCTTTTTAGGGTTTCGATTCTACTTTTGT
C Run BLAST on NCBI transcript from alignment at sc0004575:2881..5275+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043780 ID=TCONS_00043780|Name=TCONS_00043780|organism=Clytia hemisphaerica|type=transcript|length=2395bp|location=Sequence derived from alignment at sc0004575:2881..5275+ (Clytia hemisphaerica)
TGATTTAACTAAAGATGCAAATCAGAAGGTACTCAGGAACAATGTTCATT
CAAGAATACTTTTATTCTCACCCAttcatttgcaatttttcaattaaaag
tcttaaaaagataaataatttttaatcaatttgaaagaatttaATAGAAA
ATTTTCACATCTACAACATTTTACTGCCATAAAATTCACCTTAAAAAGTA
ATACTTCAGCTTGGAAAATCTTCTTTGTCCTTTTAAGTCGACTGACCACC
AAATAAGTGAGGATAACACAAGTGAGACTGACGCAGAAGATTCAATAGAC
AAAGAAAACGAAGAAACAAAGGTTTTCAGTATTCTTAAAGCTCTTGTTAG
CTCGGCAAGGGCTATCATATAgaagcaattttttttatttttgatgacTT
TCAAAAGGTATTCTACAGTAATAAAGACAGCAGAGTAGTATACAGTACAT
AATACGATATTCATAAAAGATtgatcttttatcttttccatcCTTTTAAG
ACGACTGAGCACCAAATAAGTGACGATAATGCAAGTGAAATATACGCAGA
AGATTCAAGTGAAGAAATAGAAAAGACAGAGGTTTTTACTCAAATTATTA
TGAtttcctttctttctttttaatacCAATTATCCTCATAAAAACTCATG
CTCAAAAACCCactaaaaacaaaaatcaagagTGCAAGGTTTGCAATACA
ATCCGAACAGTATCTCAAACTTAAttcctttttgaaattttttaagacTG
GGACTCGAAAAAGATTCAAATTCACATTGAAGGAAGAAGCGCCAATAGAC
ACCAAAGTCAGGCGGATAGAACGACTAAAAAGAATAAATGGACAGCAAGC
GGATACAATTGAGCAACTGAAAGAGAAAAATGCATCTCTAACCCTTCGAA
ACGCTGCCTTCACCCGTTTGAAGATAATAGAACAGCTAGGTGAAAGGCGC
TCTACTTTAATGGTAGACGCCTCACTTTTTTCTAATACTTTCCATGCTGG
TGATGCCATATTACAACAAGAAGATTCCGATTTGCTCGACCCCTCCACTT
TTGAAGGGTTGGAAGGAAAGATGTTGATTCCTGGTCTGTTTTGCTTTGCC
AAAAAAGTCACCCTCTCCAACGGAGAATCTGTTGTACTGAAAACACATAA
GCCAGAGAGTTTCGGTCTTCAGAGCTTAGCCGTCCTAAGTCACGAACATC
GTCTCCTAAAGTTTGTTGGAAGCCACGCAAATTTGGTTTCGACAGTTGGT
TTGGTCCCCACAAACGGGATATTTGCTCATGTCATGAAATTTGAGTATGG
CATGAGTCTCTTTGAAATGTCACAAAAATCTATTTCCATAAGTTCTATCT
CAAATTTCAAATCCATCATCGAGGGAGTCGCTGATGGactaaattttttg
tttgataaagGGGTCATTCATAACCATCTTATTAATGACAACGTTATTGT
TAGAGATGGTTCCCCTAGAATTGTTGGATTTACGTTTTCATGCAGGGTGT
ATTCCACCAAAAACAATGTACAAGAAGTCTTAAAGAAGTTTCAGGGTTCA
AATCATTTGGCTCCCGAACTATTCAACGGGTCTTGTGCTAGTTATTCGAC
TGATGTTTATGCGTTTGGCGTGCTAGTACAAAGcatcttaaaaatgaaat
tcggCTTTACAATGAACACAACCTTCAAGTCAAGAGTTGACTGTTATGCT
GACAGCTGTCTGTATACAGCAGACCTAAGGCCACCGCACAAGTTTCTGGC
TTCGAAAACAAAACGGATGCTTTATTACAAAATTTGATATTAGATATGCA
TTTTCCTGATTCCTTCTTTAGGCTATAAGTAGTAATTCATCATTCCTgca
taactcgaaaattttcttGAGAAAATGTTACTACCTTTTCGAGAACCCTG
CTGTTTCATCGAAACTGGTATTATTAGAAAGAATGCAGATTTATAAAAGA
TGAACAATTAATGTTTCAAATAGTAATAGTTATGGTAcatgatatatttt
tcgagtttaGATTTTCGTCATATTTTTCGAGCCTTTAAGAAAGTTTTGgc
gcgtttttagccaatcaaattgctaaTTGGCGATAAATTGAGGTAGTTAA
TCTGATTCAGTTCATAGGGAACAATAGTTTCTCGTTTTCTTCGAAATTTT
CAGGCCTAAATgttcctaaatatttttttagaccaTAATGACAAGTACCA
TAACGACCATAGTACTTTTTGAAATCCAAGCTTAAAATTTATATGCTTCG
AGGAAATTTATCATGTacttttataattttgtttCTGCTCCGTTGAAGAT
AAACTGtttcattttaatgataatgagGGTTTCTGACCAATACCTAGATT
TTTGAACTTGGAAGACCTTTTTAGGGTTTCGATTCTACTTTTGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043780-exon-sc0004575-1491911889:2881..3201 | TCONS_00043780-exon-sc0004575-1491911889:2881..3201 | Clytia hemisphaerica | exon |
| TCONS_00043780-exon-sc0004575-1510915933:2881..3201 | TCONS_00043780-exon-sc0004575-1510915933:2881..3201 | Clytia hemisphaerica | exon |
| TCONS_00043780-exon-sc0004575-1575043694:2881..3201 | TCONS_00043780-exon-sc0004575-1575043694:2881..3201 | Clytia hemisphaerica | exon |
| TCONS_00043780-exon-sc0004575-1491911889:3381..3461 | TCONS_00043780-exon-sc0004575-1491911889:3381..3461 | Clytia hemisphaerica | exon |
| TCONS_00043780-exon-sc0004575-1510915933:3381..3461 | TCONS_00043780-exon-sc0004575-1510915933:3381..3461 | Clytia hemisphaerica | exon |
| TCONS_00043780-exon-sc0004575-1575043694:3381..3461 | TCONS_00043780-exon-sc0004575-1575043694:3381..3461 | Clytia hemisphaerica | exon |
| TCONS_00043780-exon-sc0004575-1491911889:3627..5275 | TCONS_00043780-exon-sc0004575-1491911889:3627..5275 | Clytia hemisphaerica | exon |
| TCONS_00043780-exon-sc0004575-1510915933:3627..5275 | TCONS_00043780-exon-sc0004575-1510915933:3627..5275 | Clytia hemisphaerica | exon |
| TCONS_00043780-exon-sc0004575-1575043694:3627..5275 | TCONS_00043780-exon-sc0004575-1575043694:3627..5275 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004575 | supercontig | sc0004575:2881..5275 + |
Blast
The following BLAST results are available for this feature:
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