TCONS_00043767 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043767
Unique NameTCONS_00043767
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length532

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043767 ID=TCONS_00043767|Name=TCONS_00043767|organism=Clytia hemisphaerica|type=transcript|length=532bp
ATTTACATATCAACTTTTTGAGAGACGAGAGACATCTACGAATGATGGAT
GATATTGTAGAGGTTGCTGACGATGACGTTTTCCAGGACAAGCCGGTCAG
CCCCAACGAAGATCTTCCACGTTTTTATCAAGCGTGTTCAACCCTCTTAA
AGTCATCGCCTGAAATCACTAAAACTGGTTTACCGCTACGACGCTGTTCT
TCGTCAGATCAACACAAgtATAAAAAACGAGATTACCTGCTGCCAGAAGG
ACAAACAGTGATTGAGAAAAGTGTGCAATTAAAGAGCAAGAGATCACAGA
CGCTTGGATACTATCAACCAAACGTTGATCTTTACCTTGCTTTGTTCATA
CAACTAAGGAATCTTCTTTTGATAACTGCAAAACGTTTTGAATATTCACG
GAAAGTTTCTGAAAACATCGATGTAAGTTGAATTGAGTGTTTCCAGCTGA
CACACGaccacacgacgttgtttcaacgttcgcCTAACGTTACGACATGG
GCGCTAGAATGGCAATGTGTGATGTGTGTTAG
Run BLAST on NCBI

protein sequence of TCONS_00043767-protein

>TCONS_00043767-protein ID=TCONS_00043767-protein|Name=TCONS_00043767-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
LHINFLRDERHLRMMDDIVEVADDDVFQDKPVSPNEDLPRFYQACSTLLK
SSPEITKTGLPLRRCSSSDQHKYKKRDYLLPEGQTVIEKSVQLKSKRSQT
LGYYQPNVDLYLALFIQLRNLLLITAKRFEYSRKVSENIDVS
Run BLAST on NCBI

transcript from alignment at sc0004554:1..3126+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043767 ID=TCONS_00043767|Name=TCONS_00043767|organism=Clytia hemisphaerica|type=transcript|length=3126bp|location=Sequence derived from alignment at sc0004554:1..3126+ (Clytia hemisphaerica)
ATTTACATATCAACTTTTTGAGAGACGAGAGACATCTACGAATGATGGAT
GATATTGTAGAGGTTGCTGACGATGACGTTTTCCAGGTTAATgttcttag
gatgttcttaaaacacgttttttataagaacaaccgCAATTTTTAACCCT
CAAacccttaaattgttcttaacttgttcttaacttgttcttgatatttc
ggccatcgaagctttaggttcttatataatttgttcttataaaaaacgtg
tatgctctTAATTTATTCGATCATGAGGGATGAGAACTCAAAATGaactc
attttttaaatttgaacctTATATTGTTCTTGAATCTGGTTATTATATTT
TCCTGTAGCTAAAGTTCTTGTGAAAAACTTccattatatgtttttttttc
aaacttgttttaaaaaatgcaaGCCTTCCCTAAAATTCTTATCATCTGGC
GATGTTTTTGACTTAATCTTGAAATGTGACAAACTACTCCCTCATTCAGC
TAGTGATGAGAACTATTGAGAAAGTCATTTTATTGGGTGGGACCGACTTT
TGGAAAGCATTaggaaaaattttgtttcagaAAGAATTTCGCCAGTTTAG
TAAAAATGCACGCTAATTAGAAATTCTAAACCTAATATAAGTTAGGATCG
CAAAATACGGCCATGTTTTTTAAATCAATGCACCATATCTAACTAATGtc
caaaaaatttccttttcacAAACTTTATGTTAGGCCAATAATGTAATACC
AAGCCCATGGGAAGGGCTAGGTCAGTGACTTTGGTATACAAATGAAACGG
AATCTTGTTAGGATTTTTGTGACGGGGCGTACTAGGGTTATGAGCTGACG
GGTCGATCCTCAGACTCTTAgagggactaaaaaggaggaaaaaaagagga
attttgttaattttacgATCCTTATTGAGATAAATTTGACTAAATTTTAA
TCTTTTAGGGgtaaaaagctgaaaattttctgCTTCTTTTCAACCCTGTA
GGATTGAGatttaattttctaaattttcaaaccCTTTTATTGGGACTTCC
AGGTTCGAGAAAGCAAACTTAATGGTAGCACACTTGCCTAAACACTCCCT
TCCGGGGATCATGtgttatgttatgtattatCTATATAAATTTGCTTAAA
GCTTGCCTTGAAATTAATATTGTTCTCTTCTACTGTTTTTAGGACAAGCC
GGTCAGCCCCAACGAAGATCTTCCACGTTTTTATCAAGCGTGTTCAACCC
TCTTAAAGTCATCGCCTGAAATCACTAAAACTGGTTTACCGCTACGACGC
TGTTCTTCGTCAGATCAACACAAGTATGTTTCCTATTGTTTGAAATAATT
TAGCGAGTTtccgaccgcagtcgagggtgACCCTAaaagccggtctccac
ttgcgcgctgCGATCGTACGTTTTGGTTTCAATccatttttcttggaaaa
aagattacgtcataaaaatgttgtGTGCGTTCGAAAAGAAAGTTGAATAC
ATTTAAACtcttttcaaccgttacgtcagatcgcgccaatggaattcttt
tgaccaataacgtggaagctttgctcgagaaagtgcgatcgcagcgaccg
cagtcgagggcgaccctaAGGCTCCTttttctttacctaccattccGAAG
GTAAGGGAGGGCGCTACTCCTTACCCTTGGTTTTCCCTttactgagcatc
aagcaaaGAAGGCATCAAATACCATTTTGGACTAAGTCATTTTGGATTGA
TTAAGTTTAAACCGGAAAGTTAAATTTTTAGTTCCAGTCCGTAAATCAAA
AATAAGGTTTATTCCGTTGGTTTGATTAGCAGAGAAAACTGGTTATAGAT
ACTGTAAACAACGCTTAGATTTCTATCTtacttaattttgatttttttac
ttttaggtATAAAAAACGAGATTACCTGCTGCCAGAAGGACAAACAGTGA
TTGAGAAAAGTGTGCAATTAAAGAGCAAGAGATCACAGACGCTTGGATAC
TATCAACCAAACGTTGATCTTTACCTTGCTTTGTTCATACAACTAAGGAA
TCTTCTTTTGTAAGTATCCATACTCAagccacagatttctgtaaagcccc
aAGGGCtaaatgtcgtgctttaagctcttccaagcaaaaaaaagtgaata
tcggaaaaaatatcaactacTATTGTTCGAAAACCTGCGAAGTTTCTGAT
TTGTCAAGCACTGAagttctattgtaatgtcacgtgacctaggtaggata
cccacctaacctcggcacacttttcagacaaagcacgacatctagccttt
cgggctttataaatctatgactCAAGCTTCTCAAATAACACACAAGGCAC
ACGAGGCTAAAGGTCatcttttaacgtttatcttACTATTTACTTTAAca
tcattttcaatttaaagaAAGGCAAACCGTTTTCCCTTACCGCAAAGCGC
AGAttgtgaaaatttcttttgttagttCTGCTTTGTCAACATAAGAGACA
CGCCCTCAAATCATATCTTTAGTCTAAAGCAACGATCACGTAACTTTCAT
AGCGTCCAAGCAACGTTTTATGAACATATTCACGGGATCATCGCCGTGGT
CCTTAATAATAGAGAGGTAGATATTACGTTAGTTAGCTGCTATCAATGTT
ACGTCATTTGACACTATGTTGGCTTTGttcgaatttgaaaaataaatata
ttcataAATTGTAGGCTTTCACCAACAGGTTGAATTATCTTGTGGTGTCT
GGCAGAACTTCCCCAACTAGCACACAACGATgcttcaacgtttatttaac
gttcaagacacattagatgaacgttgcaacaacattgtgtgtcagctggg
tatcGCCATGAAGCTCTAGTTTCTGATCTGATCTACATAGAAGGCTTAAT
ATTGAAAGTGGTCTGAGTGTATTAAACTTTTGAAATGAAGTCATTTTGCT
CTTTATTTTTCCAGGATAACTGCAAAACGTTTTGAATATTCACGGAAAGT
TTCTGAAAACATCGATGTAAGTTGAATTGAGTGTTTCCAGCTGACACACG
accacacgacgttgtttcaacgttcgcCTAACGTTACGACATGGGCGCTA
GAATGGCAATGTGTGATGTGTGTTAG

Coding sequence (CDS) from alignment at sc0004554:1..3126+

>TCONS_00043767 ID=TCONS_00043767|Name=TCONS_00043767|organism=Clytia hemisphaerica|type=CDS|length=1716bp|location=Sequence derived from alignment at sc0004554:1..3126+ (Clytia hemisphaerica)
TTACATATCAACTTTTTGAGAGACGAGAGACATCTACGAATGATGGATGA
TATTGTAGAGGTTGCTGACGATGACGTTTTCCAGGACAAGCCGGTCAGCC
CCAACGAAGATCTTCCACGTTTTTATCAAGCGTGTTCAACCCTCTTAAAG
TCATCGCCTGAAATCACTAAAACTGGTTTACCGCTACGACGCTGTTCTTC
GTCAGATCAACACAAgtATAAAAAACGAGATTACCTGCTGCCAGAAGGAC
AAACAGTGATTGAGAAAAGTGTGCAATTAAAGAGCAAGAGATCACAGACG
CTTGGATACTATCAACCAAACGTTGATCTTTACCTTGCTTTGTTCATACA
ACTAAGGAATCTTCTTTTGATAACTGCAAAACGTTTTGAATATTCACGGA
AAGTTTCTGAAAACATCGATGTAAGTTGATTACATATCAACTTTTTGAGA
GACGAGAGACATCTACGAATGATGGATGATATTGTAGAGGTTGCTGACGA
TGACGTTTTCCAGGACAAGCCGGTCAGCCCCAACGAAGATCTTCCACGTT
TTTATCAAGCGTGTTCAACCCTCTTAAAGTCATCGCCTGAAATCACTAAA
ACTGGTTTACCGCTACGACGCTGTTCTTCGTCAGATCAACACAAgtATAA
AAAACGAGATTACCTGCTGCCAGAAGGACAAACAGTGATTGAGAAAAGTG
TGCAATTAAAGAGCAAGAGATCACAGACGCTTGGATACTATCAACCAAAC
GTTGATCTTTACCTTGCTTTGTTCATACAACTAAGGAATCTTCTTTTGAT
AACTGCAAAACGTTTTGAATATTCACGGAAAGTTTCTGAAAACATCGATG
TAAGTTGATTACATATCAACTTTTTGAGAGACGAGAGACATCTACGAATG
ATGGATGATATTGTAGAGGTTGCTGACGATGACGTTTTCCAGGACAAGCC
GGTCAGCCCCAACGAAGATCTTCCACGTTTTTATCAAGCGTGTTCAACCC
TCTTAAAGTCATCGCCTGAAATCACTAAAACTGGTTTACCGCTACGACGC
TGTTCTTCGTCAGATCAACACAAgtATAAAAAACGAGATTACCTGCTGCC
AGAAGGACAAACAGTGATTGAGAAAAGTGTGCAATTAAAGAGCAAGAGAT
CACAGACGCTTGGATACTATCAACCAAACGTTGATCTTTACCTTGCTTTG
TTCATACAACTAAGGAATCTTCTTTTGATAACTGCAAAACGTTTTGAATA
TTCACGGAAAGTTTCTGAAAACATCGATGTAAGTTGATTACATATCAACT
TTTTGAGAGACGAGAGACATCTACGAATGATGGATGATATTGTAGAGGTT
GCTGACGATGACGTTTTCCAGGACAAGCCGGTCAGCCCCAACGAAGATCT
TCCACGTTTTTATCAAGCGTGTTCAACCCTCTTAAAGTCATCGCCTGAAA
TCACTAAAACTGGTTTACCGCTACGACGCTGTTCTTCGTCAGATCAACAC
AAgtATAAAAAACGAGATTACCTGCTGCCAGAAGGACAAACAGTGATTGA
GAAAAGTGTGCAATTAAAGAGCAAGAGATCACAGACGCTTGGATACTATC
AACCAAACGTTGATCTTTACCTTGCTTTGTTCATACAACTAAGGAATCTT
CTTTTGATAACTGCAAAACGTTTTGAATATTCACGGAAAGTTTCTGAAAA
CATCGATGTAAGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027443XLOC_027443Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043767-exon-sc0004554-1491911889:1..86TCONS_00043767-exon-sc0004554-1491911889:1..86Clytia hemisphaericaexon
TCONS_00043767-exon-sc0004554-1510915933:1..86TCONS_00043767-exon-sc0004554-1510915933:1..86Clytia hemisphaericaexon
TCONS_00043767-exon-sc0004554-1575043694:1..86TCONS_00043767-exon-sc0004554-1575043694:1..86Clytia hemisphaericaexon
TCONS_00043767-exon-sc0004554-1491911889:1193..1323TCONS_00043767-exon-sc0004554-1491911889:1193..1323Clytia hemisphaericaexon
TCONS_00043767-exon-sc0004554-1510915933:1193..1323TCONS_00043767-exon-sc0004554-1510915933:1193..1323Clytia hemisphaericaexon
TCONS_00043767-exon-sc0004554-1575043694:1193..1323TCONS_00043767-exon-sc0004554-1575043694:1193..1323Clytia hemisphaericaexon
TCONS_00043767-exon-sc0004554-1491911889:1907..2059TCONS_00043767-exon-sc0004554-1491911889:1907..2059Clytia hemisphaericaexon
TCONS_00043767-exon-sc0004554-1510915933:1907..2059TCONS_00043767-exon-sc0004554-1510915933:1907..2059Clytia hemisphaericaexon
TCONS_00043767-exon-sc0004554-1575043694:1907..2059TCONS_00043767-exon-sc0004554-1575043694:1907..2059Clytia hemisphaericaexon
TCONS_00043767-exon-sc0004554-1491911889:2965..3126TCONS_00043767-exon-sc0004554-1491911889:2965..3126Clytia hemisphaericaexon
TCONS_00043767-exon-sc0004554-1510915933:2965..3126TCONS_00043767-exon-sc0004554-1510915933:2965..3126Clytia hemisphaericaexon
TCONS_00043767-exon-sc0004554-1575043694:2965..3126TCONS_00043767-exon-sc0004554-1575043694:2965..3126Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043767-proteinTCONS_00043767-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004554supercontigsc0004554:1..3126 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.38207	4.92704	4.47712	2.79844	1.9256	1.75573	0.847286	3.04067	2.03629	1.83438	3.11586	1.38988	4.74825	5.08283	1.12266	1.27171	3.71048	5.91597	2.91901	3.17672	2.54875	5.90515	3.14846	3.54938	3.41992	3.36795	0.75305	0.96441	4.75456	5.09256
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043767 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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