TCONS_00043753 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043753
Unique NameTCONS_00043753
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1558

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043753 ID=TCONS_00043753|Name=TCONS_00043753|organism=Clytia hemisphaerica|type=transcript|length=1558bp
AAACTTTAGTTGCTATTAGCAACAAAGTGAGGTTTACAAATGGCGACATT
TTTGCTCCACTTCAAGTCCACTTGGCGATGACTGGAAAAGAAACAGAGAT
GAGAGTTATGTGGAATTCTGCTGAAGTCTCTGAAGGCATCCAAGTACGTT
ATGGTAAAACTAAAGACCTTGACAAAACACAAACGAAATACACCGTCAAA
ACTTACAAAGCTTCAGACATGTGCGAATCGCCTGCTAACACAACTGGATT
TTGGGATGCTGGATATATTTATGATGTTTTGTTGACTGACTTGGAACCCA
ACACGAGATATTATTACTCCTGTGGTAGTAAAGAGTTTATGACGTCGGTG
TACAACTTTACAACTGTGATCAAAGGAGGAGACATGACTCCTTTCAAATT
TATCGCTTTTGGTGACATGGGAATCACCTCTCAAGCTGAAACAACCACTA
AATCAGTTCGCCAAGAGATCGAGAATAACGATGTGAAATTTGTTTACCAT
GCCGGCGACATCTCGTACGCTCGTGGATATGCGTACCTGTGGGATCAATG
GTTTCACGAGATTCAACCAATGTCCGCTTTGGCTCCATACATGATTAACC
TGGGTAACCATGAGTACCAACACATCTATGCATTTGATAAAGACCCTTCT
CACCAACCGATGTGGCATCCATCATGGTATAACGGAGGTCAAGGATCTTT
CGGTGAATGTGCTATTCCAATGGTTAATCGATTTCATATGCCTGATAACG
GACTCGGTATATTCTGGCATAGTTATAACGTTGGTTTCATTCACATGGTC
TCCATCAGCTCTGAGCACGATTACCGAGAAGGTTCACTACAATATAGATG
GTTGGAAAATGATCTGAAGAATGTCGATCGCACCAAAACACCTTTTGTGA
TCGTTAGCGCCCATCGACCGATGTATTGCAGTGAATATTACCCAGgaCCA
GATTGGACTACCATACTTGGCCAACAACAATATCTGGAAGATTTGTTATA
CAAATACCAAGTGGATGTCGGTCTTTGGGCTCACTATCACATTTACGAAC
GAACGTGTAAAGTATATCGCAACGAATGCCGGGAGGACGGGATAACTCAT
TTGGTGGTCGGTACAGGAGGTGTGAACTTGGAGATCAATAAATGGTTCAC
AAAGGAATGGTCTAAGGTACGTGACGCTGATTTTGGTTACGGTCGATTCT
CGGTGACAAACTCCACTCACCTTTTGTTCGAATTCGTGAAACTTAACACT
GGGAAAGTTGGCGACTCGGTTTGGATCACcaaataatttttgattaaCTG
ATTTCTGACTACAgcgccgtaggaagcattttcatattgggggggctgaa
gtttagtgacaccgcgagggtcaaccatggtttggcccgaggggggaaat
tttaaaaattgagctctagattgcttaaaaatacactcaaaacatgcaca
taaaagacaattatgacaaattaaaaaagaaaaactttgcattcattttg
caaaataaccatttttgaaaaaattattgggggggcataGCTACCCtccc
cttgcccc
Run BLAST on NCBI

transcript from alignment at sc0004531:12..6194-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043753 ID=TCONS_00043753|Name=TCONS_00043753|organism=Clytia hemisphaerica|type=transcript|length=6183bp|location=Sequence derived from alignment at sc0004531:12..6194- (Clytia hemisphaerica)
AAACTTTAGTTGCTATTAGCAACAAAGTGAGGTTTACAAATGGCGACATT
TTTGCTCCACTTCAAGTCCACTTGGCGATGACTGGAAAAGAAACAGAGAT
GAGAGTTATGTGGAATTCTGCTGAAGGTACTTAAGTCCTTAAAAATAGCA
ATTTGTTTGCCTAGTCACTTAAGTTGTTATGCTTGAAGGATACAGAACTC
AGTATCCTTTAAAAAGGAAAAGAACAGGGCCTGAAAGTAATGGTTGGTAG
ATAGCGATATATTTATAAAGCCCGAAGGGCTAGATGACGAGATGTCGTGC
TTTGGCTGAAAAGTGTGCCGAAGTTAGGTAGGAAATCGTACCTAGGTCGG
AAATCCTACCTAGGTCGCAAATCCTACCTAGTTCACGTGACCTTACAATA
GAATTTCAGTGCTTGACCAATAAGAAGTTTCACGGGTTTTCGAAAACAAT
AGCAGTAATATTTTTTGCGATATTCACATTTTTTTGCTTTGAAGAGTTTA
AAGCACGGCATCTAGCACTTGGGGCTTTACAGAAATCTGTGAGACAGGGC
TTTTAGATAATCTTTTGATTGTTTTGACGGAAGGGGCCCAGGGGGAGGAG
ACTCGGCTATTTATGAACTGAACTGAAGGGAACATTGAAGCATTCCAACC
GGCAACTCCTTGTTTGTGGAGCTAAAGCCTGAGACCAGTTGTTCATTTCT
CCTCAAAAAACCCTATAAAGGTGTTCTTGTAAGTTTGTCTCAAATTAAGG
ATATTTTCCTTTTCATTTATCAGTCTCTGAAGGCATCCAAGTACGTTATG
GTAAAACAAAAGACCTTGACAAAACACAAACGAAATATACCGTCAAAACT
TACAAAGCTTCAGACATGTGCGAATCGCCTGCTAACACAACTGGATTTTG
GGATGCTGGGTATATTTATGATGTTTTGTTGACTGACTTGGAACCCAACA
CGAGATATTATTACTCCTGTGGTAGTAAAGAGGTAAAAATAAATACCAAG
AAAAGACCTTATTGAAGCTCAAGCTAGAACAATAGCCACTTGAAAATTCC
ACTTAATAATTTCGTCCCCTAATTTTAGTGTCAAAGGTTTTTCTTCAATC
TTTAATAACGACAATAATGTGGAGTCTTTTAATGAAACAGCAGAAGGAAG
GTCTGTTGGAAAGAACGCCCTTTTAAGCATTTTGTTTCGGTTGATGAACA
CCAGATCTATTTTCGACATCTTTAAGCAATTTTAAAAGTAAACCTTATAT
ACGTGTATTTCGATCACAATCTTAGAATTTCCTTGATCCAAATAAACATC
AAAAGTTAAACTTTCCTCTTTTCAATACAAAGGAATTCAGTATTTATATA
TCTTGAGAAAAAGTAAACTCGGAGTGTGTTGAGCCCTTTCGTAATACTCT
TGTTGCCGGATCTTGAAAAAAATGATCCATTTTTTGTCTCCACATTTCAG
TTTATGACGTCAGTGTACAACTTTACAACTGTGATCAAAGGAGGAGATAA
GACTCCTTTCAAATTTATCGCTTTTGGTGACATGGGAATCACCTCCCAAG
CTGAAACAACCACCAAATCAGTTCGCCAAGAGATCGAGAATAACGATGTG
AAATTTGTTTACCATGCCGGAGACATCTCGTACGCTCGTGGATATGTAAG
AATCTTTTGTCATTGAAAATTTAAACTTCATGTAAACTTTATGTAAAAAC
ACTTAATTTACATGAAAATCTTTAAACTTTCAGCGTACATTAATCTTCTA
TCTCGGACAGATTTCCGTCTCAAGGCCATGGCAAACCAGTCCAACATTTC
ATGCAACTTTATATCCAGTGCTACATGGAGTCTTTCATCTACAAATGTTG
GATGAAATGTTTGATTGCGAACAAACTTCATCGAACACGTTATTTTCTAC
TTTTTTTGAATTTTCCTTTTTTTTTGAAAATTTTACATTTCCACCAACTG
TTCAAGAATTTCATCCATCATTCGAAAAATAGCATGCTAGATGAAATGTT
GCACCGGTTTGCCCTGGTCTTTATTGATTACTATCTGAGTGAAAAAAACT
TTGCTTTCATCTACCGACTATTTGAACTATTTTACTACTGACCTTTTTGT
GTATGGTACAAATATTTCNGCTCCACTTCAAGTCCACTTGGCGATGACTG
GAAAAGAAACAGAGATGAGAGTTATGTGGAATTCTGCTGAAGGTACTTAA
GTCCTTAAAAAAGCAATTTGGGTGCCTAGTTACTTAAATTGTTATGCTTG
AAGGATAATTATAATTATAAATCACACAGAACTCAGTATCCTTTAAAAAG
GAAAAGAACAGGGCCTGAAAGTAATGGTAGGTAGATAGTCATATATTTAT
AAAGCCCGAAAGGCTAGATGTCGTGCTTTGGCTGAAAAGTGTGTCGAAGT
TAGGTAGGAAATCGTACCTAGGTCGGAAATCCTACCTAGGTCACGTGACA
TTACAATAGAATTTCAGTGCTTGACCAATAAGAAGTTTCACGGGTTTTCG
AAAACAATAGCAGTAATATTTTTTGCGATATTCACTTTTTTTTGCTTTGA
AGAGTTTAAAGCACGACATCTAGCACTTGGGGCTTTACAGAAATCTGTGA
GACAGGGCTTTTAGACAATCTTTTGATTGTTTTGACGGAAGGGACTCGGC
TATTTATGAACTGAACTGAAGGGAACATTGAAGCATTCCAACCGGCAACT
CCTTATTTGTGGAGCTAAAGCCTGAGACCAGTTGTTCATTTCTCCTCAAA
GCACCCTTTAAAGGTGTTCTTGTAAGTTTGTTTCAAATTAAGGATATTTT
TCTTTTCATTTATCAGTCTCTGAAGGCATCCAAGTACGTTATGGTAAAAC
TAAAGACCTTGACAAAACACAAACGAAATACACCGTCAAAACTTACAAAG
CTTCAGACATGTGCGAATCGCCTGCTAACACAACTGGATTTTGGGATGCT
GGATATATTTATGATGTTTTGTTGACTGACTTGGAACCCAACACGAGATA
TTATTACTCCTGTGGTAGTAAAGAGGTAAAAATAAATGCCAAGAAAAGAC
CTTATTGAAGCTCAAGCTAGAACAATAGCCACTTGAAAATTCCACTTAAA
AATTTCGTCCCCTAATTTTAGTGTAAAAAGTTTTTCTTCAAACTTTAATA
ACGACAATAATGTGGAGTCTTTTAATGAAACAGCAGAAGGAAGGTCTGTT
GCAAAGAACGCCCTTTTAAGCATTTTGTTTCGGTTGATGAACACCAGATC
TATTTTCGACATCTTTAAGCAATTTTAAAAGTAAACCTTATATATTTCGA
TCACAATCTTAAAATTTCCTTGATCCAAATAAACATCAAAAGTTAAACTT
TCCTCTTTTCAATGCAAAGGAATTCAATATTTATAATTCTTGAGAAAAAG
TAAACTCGGAGTGTTGAGCCCTTTTGTGATACAGCCTTGGCCGTTTTTTG
AAACTGATTCACTTTTTCACCCACATTTCAGTTTATGACGTCGGTGTACA
ACTTTACAACTGTGATCAAAGGAGGAGACATGACTCCTTTCAAATTTATC
GCTTTTGGTGACATGGGAATCACCTCTCAAGCTGAAACAACCACTAAATC
AGTTCGCCAAGAGATCGAGAATAACGATGTGAAATTTGTTTACCATGCCG
GCGACATCTCGTACGCTCGTGGATATGTAAGAATCATTTGTTATTGGGAT
AGTTTAGACTCGAAGTTTTTATTGATAATTTAGTTCAAACTTTTTCCACT
TCGGAGGGATTTCCATCTTAGCAAGGCCTTCTCCATTATCGGATTACAGT
AGAGTCTCCTTAACTCGACCACCTGGTTTATAAGGCATTGTTAACTGAGG
GTACCAGCAAATTTGGTCAAGTTAAGCATATTTGCATAAAAGATTTCGAG
TTGCAGAGGCTCCACCCTCACTGCAACATCTTTATTTTGACAACTGACAT
TTACGCGTGTGGTACAAATGTTTACTCTCCTTTCTCCTAAGGCGTACCTG
TGGGATCAATGGTTTCACGAGATTCAACCAATGTCCGCTTTGGCTCCATA
CATGATTAACCTGGGTAACCATGAGTACCAACACATCTATGCATTTGATA
AAGACCCTTCTCACCAACCGATGTGGCATCCATCATGGTATAACGGAGGT
CAAGGATCTTTCGGTGAATGTGCTATTCCAATGGTTAATCGATTTCATAT
GCCTGATAACGGACTCGGTATATTCTGGTATGTGTTTCCTGAAACATTTA
TGTAATCTTAGTATTACCCCAGCTGGCACACAACGTTTTTTTGACGTTTA
TCTAACGTTCACAACGTCCATATAACGTTAGATGAACGTTGAAACAACGT
CGTGTGCCAGCTGGGACTATTTATAAAAAGAACATCGAGGATTATGAAAA
GTTTCAAAATGTAAATAAGAGATTGGATCTTTTTTCCATTCAGTTTGATT
TTGGAAATTTTTGATGATTTTGATTATTGATATCAGTACAATAGCNCCGA
TGTGGCATCCATCATGGTATAACGGAGGTCAAGGATCTTTCGGTGAATGT
GCTATTCCAATGGTTAATCGATTTCATATGCCTGATAATGGACTCGGTAT
ATTCTGGTATGTGTTTCCTGAAACATGTTTATGTAATCTTAGTATTTATA
AAAGAACATCGAGGATTATGAAAAGTTTCAAAATGTAAATAAGAGATTGG
ATCTTTTTTCCATTCAATTTGATTTTGGAAATTTTTGATGATTTTGATTA
TTGATATCTATACATACACTATTTCATAGTGATTTTTCTCTTATTTGTTT
TCTTAGGCATAGTTATAACGTTGGTTTCATTCACATGGTCTCCATCAGCT
CTGAGCACGATTACCGAGAAGGTTCACTACAATATAGATGGTTGGAAAAT
GATCTGAAGAATGTCGATCGCACCAAAACACCTTTTGTGATCGTTAGCGC
CCATCGACCGATGTATTGCAGTGAATATTACCCAGGTGAGGTCAAAATTA
CGGAAATTGCTATAAAATCTTTTCTTTTGTGATTTTCAACTTCTCAAAAG
TTACTGGAAAGTGCCTAAGGGGTTGAAAATATGTGTGTATTCTGCAGGAA
TGTTATTTTTCGGTAAAAGCTTACTTTAGGCGTACAAACTTTCGCGAGCA
GAAACTTTCGCGAGGTCGAAAAATCCCGAAATCTACGACATTTACTTTTG
CGAATTTGACAAAAAAAATATTTTTTTTCGCCAATTATGTATATTTTAAG
TAGAAAATCAAGTTTTCGGTACATAAAACCAGTGTTTTCATCGTTCAAAT
GTACTCAAACCGCAATTGATTGACTTTTGCATAATATCCACGCTAAATTT
GATCCTTGTTATCGTCAAAGAGTAAAGTTTGAGTAAATTTTCTTTACAGA
TTTCTTTTCGCGAGCATAAACTTTCGCGAATTGCCCCCTCAAGAAATTTC
AAAGACATTTACTTTCGCGAAAAGGGCTAGAATTCGCGAAAATCGCGAAA
GTTTCTGCTCACGAAAGTTTGTACGCCTAAAGTATTTCATGGAGATGCTG
AAGTGTTTTTTCTTTTGTAGGACCAGATTGGACTACCATACTTGGCCAAC
AACAATATCTGGAAGATTTGTTATACAAATACCAAGTGGATGTCGGTCTT
TGGGCTCACTATCACATTTACGAACGAACGTGTAAAGTATATCGCAACGA
ATGCCGGGAGGACGGGATAACTCATTTGGTGGTCGGTACAGGAGGTGTGA
ACTTGGAGATCAATAAATGGTTCACAAAGGAATGGTCTAAGGTACGTGAC
GCTGATTTTGGTTACGGTCGATTCTCGGTGACAAACTCCACTCACCTTTT
GTTCGAATTCGTGAAACTTAACACTGGGAAAGTTGGCGACTCGGTTTGGA
TCACCAAATAATTTTTGATTAACTGATTTCTGACTACAGCGCCGTAGGAA
GCATTTTCATATTGGGGGGGCTGAAGTTTAGTGACACCGCGAGGGTCAAC
CATGGTTTGGCCCGAGGGGGGAAATTTTAAAAATTGAGCTCTAGATTGCT
TAAAAATACACTCAAAACATGCACATAAAAGACAATTATGACAAATTAAA
AAAGAAAAACTTTGCATTCATTTTGCAAAATAACCATTTTTGAAAAAATT
ATTGGGGGGGCATAGCTACCCTCCCCTTGCCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027430XLOC_027430Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043753-exon-sc0004531-1575043694:6069..6194TCONS_00043753-exon-sc0004531-1575043694:6069..6194Clytia hemisphaericaexon
TCONS_00043753-exon-sc0004531-1575043694:3170..3378TCONS_00043753-exon-sc0004531-1575043694:3170..3378Clytia hemisphaericaexon
TCONS_00043753-exon-sc0004531-1575043694:2519..2713TCONS_00043753-exon-sc0004531-1575043694:2519..2713Clytia hemisphaericaexon
TCONS_00043753-exon-sc0004531-1575043694:1968..2203TCONS_00043753-exon-sc0004531-1575043694:1968..2203Clytia hemisphaericaexon
TCONS_00043753-exon-sc0004531-1575043694:1210..1388TCONS_00043753-exon-sc0004531-1575043694:1210..1388Clytia hemisphaericaexon
TCONS_00043753-exon-sc0004531-1575043694:12..624TCONS_00043753-exon-sc0004531-1575043694:12..624Clytia hemisphaericaexon
TCONS_00043753-exon-sc0004531-1510915933:6069..6194TCONS_00043753-exon-sc0004531-1510915933:6069..6194Clytia hemisphaericaexon
TCONS_00043753-exon-sc0004531-1510915933:3170..3378TCONS_00043753-exon-sc0004531-1510915933:3170..3378Clytia hemisphaericaexon
TCONS_00043753-exon-sc0004531-1510915933:2519..2713TCONS_00043753-exon-sc0004531-1510915933:2519..2713Clytia hemisphaericaexon
TCONS_00043753-exon-sc0004531-1510915933:1968..2203TCONS_00043753-exon-sc0004531-1510915933:1968..2203Clytia hemisphaericaexon
TCONS_00043753-exon-sc0004531-1510915933:1210..1388TCONS_00043753-exon-sc0004531-1510915933:1210..1388Clytia hemisphaericaexon
TCONS_00043753-exon-sc0004531-1510915933:12..624TCONS_00043753-exon-sc0004531-1510915933:12..624Clytia hemisphaericaexon
TCONS_00043753-exon-sc0004531-1491911889:6069..6194TCONS_00043753-exon-sc0004531-1491911889:6069..6194Clytia hemisphaericaexon
TCONS_00043753-exon-sc0004531-1491911889:3170..3378TCONS_00043753-exon-sc0004531-1491911889:3170..3378Clytia hemisphaericaexon
TCONS_00043753-exon-sc0004531-1491911889:2519..2713TCONS_00043753-exon-sc0004531-1491911889:2519..2713Clytia hemisphaericaexon
TCONS_00043753-exon-sc0004531-1491911889:1968..2203TCONS_00043753-exon-sc0004531-1491911889:1968..2203Clytia hemisphaericaexon
TCONS_00043753-exon-sc0004531-1491911889:1210..1388TCONS_00043753-exon-sc0004531-1491911889:1210..1388Clytia hemisphaericaexon
TCONS_00043753-exon-sc0004531-1491911889:12..624TCONS_00043753-exon-sc0004531-1491911889:12..624Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004531supercontigsc0004531:12..6194 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.1014	17.7811	9.69429	0.0048966	81.581	83.0451	55.1577	52.9496	75.9361	73.8297	63.1237	52.0095	26.4711	39.0436	7.85443	0.595107	9.19123	5.48602	1.86206	24.0539	21.294	26.9385	24.8604	21.702	89.721	73.5281	42.6085	59.5248	52.0289	60.7978
Blast
[Close]
BLAST of TCONS_00043753 vs. Swiss-Prot (Human)
Match: ACP7 (Acid phosphatase type 7 OS=Homo sapiens GN=ACP7 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.342e-41
Identity = 110/370 (29.73%), Postives = 172/370 (46.49%), Query Frame = 3 
Query:  264 YIYDVLLTDLEPNTRYYYSCGSKEFMTSVYNFTTVIKGGDMTPFKFIAFGDMGITSQAETTTKSVRQEIENNDVKFVYHAGDISYA--RGYAYLWDQWFHEIQPMSALAPYMINLGNHEYQHIYAFDKDPSHQPMWHPSWYNGGQGSFGECAIPMVNRFHMPDNGLGIFWHSYNVGFIHMVSISSE------HDYREGSLQYRWLENDLK--NVDRTKTPFVIVSAHRPMYCSE-------YYPGPDWTTILGQQQYLEDLLYKYQVDVGLWAHYHIYERTCKVYR----NECRE------DGITHLVVGTGGVNLEINKW--FTKEWSKVRDADFGYGRFSVTNSTHLLFEFVKLNT-GKVGDSVWITK 1283
            YI+ V L  L P  +Y Y CGS +  +  + F  +  G   +P +   FGD+G  +        +R++ +      V H GD +Y   +  A + D++   I+P++A  PYM   GNHE ++ ++  K                             RF MP +  G+ W+S+++G  H++S S+E      +       Q+RWLE+DL+  N +R   P++I   HRPMYCS         +       + G+   LEDL YKY VD+ LWAH H YER   +Y     N  RE       G  H++ G+ G    +  +  F + WS VR  ++GY R  + N TH+  + V  +  GK+ D VW+ +
Sbjct:   92 YIHRVTLRKLLPGVQYVYRCGSAQGWSRRFRFRALKNGAHWSP-RLAVFGDLG--ADNPKAVPRLRRDTQQGMYDAVLHVGDFAYNLDQDNARVGDRFMRLIEPVAASLPYMTCPGNHEERYNFSNYK----------------------------ARFSMPGDNEGL-WYSWDLGPAHIISFSTEVYFFLHYGRHLVQRQFRWLESDLQKANKNRAARPWIITMGHRPMYCSNADLDDCTRHESKVRKGLQGKLYGLEDLFYKYGVDLQLWAHEHSYERLWPIYNYQVFNGSREMPYTNPRGPVHIITGSAGCEERLTPFAVFPRPWSAVRVKEYGYTRLHILNGTHIHIQQVSDDQDGKIVDDVWVVR 429
The following BLAST results are available for this feature:
BLAST of TCONS_00043753 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACP71.342e-4129.73Acid phosphatase type 7 OS=Homo sapiens GN=ACP7 PE... [more]
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