TCONS_00043751 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043751
Unique NameTCONS_00043751
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1503

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043751 ID=TCONS_00043751|Name=TCONS_00043751|organism=Clytia hemisphaerica|type=transcript|length=1503bp
TCCACTTCAAGTCCACTTGGCGATGACTGGAAAAGAAACAGAGATGAGAG
TTATGTGGAATTCTGCTGAAGTCTCTGAAGGCATCCAAGTACGTTATGGT
AAAACTAAAGACCTTGACAAAACACAAACGAAATACACCGTCAAAACTTA
CAAAGCTTCAGACATGTGCGAATCGCCTGCTAACACAACTGGATTTTGGG
ATGCTGGATATATTTATGATGTTTTGTTGACTGACTTGGAACCCAACACG
AGATATTATTACTCCTGTGGTAGTAAAGAGTTTATGACGTCGGTGTACAA
CTTTACAACTGTGATCAAAGGAGGAGACATGACTCCTTTCAAATTTATCG
CTTTTGGTGACATGGGAATCACCTCTCAAGCTGAAACAACCACTAAATCA
GTTCGCCAAGAGATCGAGAATAACGATGTGAAATTTGTTTACCATGCCGG
CGACATCTCGTACGCTCGTGGATATGCGTACCTGTGGGATCAATGGTTTC
ACGAGATTCAACCAATGTCCGCTTTGGCTCCATACATGATTAACCTGGGT
AACCATGAGTACCAACACATCTATGCATTTGATAAAGACCCTTCTCACCA
ACCGATGTGGCATCCATCATGGTATAACGGAGGTCAAGGATCTTTCGGTG
AATGTGCTATTCCAATGGTTAATCGATTTCATATGCCTGATAACGGACTC
GGTATATTCTGGCATAGTTATAACGTTGGTTTCATTCACATGGTCTCCAT
CAGCTCTGAGCACGATTACCGAGAAGGTTCACTACAATATAGATGGTTGG
AAAATGATCTGAAGAATGTCGATCGCACCAAAACACCTTTTGTGATCGTT
AGCGCCCATCGACCGATGTATTGCAGTGAATATTACCCAGgaCCAGATTG
GACTACCATACTTGGCCAACAACAATATCTGGAAGATTTGTTATACAAAT
ACCAAGTGGATGTCGGTCTTTGGGCTCACTATCACATTTACGAACGAACG
TGTAAAGTATATCGCAACGAATGCCGGGAGGACGGGATAACTCATTTGGT
GGTCGGTACAGGAGGTGTGAACTTGGAGATCAATAAATGGTTCACAAAGG
AATGGTCTAAGGTACGTGACGCTGATTTTGGTTACGGTCGATTCTCGGTG
ACAAACTCCACTCACCTTTTGTTCGAATTCGTGAAACTTAACACTGGGAA
AGTTGGCGACTCGGTTTGGATCACcaaataatttttgattaaCTGATTTC
TGACTACAgcgccgtaggaagcattttcatattgggggggctgaagttta
gtgacaccgcgagggtcaaccatggtttggcccgaggggggaaattttaa
aaattgagctctagattgcttaaaaatacactcaaaacatgcacataaaa
gacaattatgacaaattaaaaaagaaaaactttgcattcattttgcaaaa
taaccatttttgaaaaaattattgggggggcataGCTACCCtccccttgc
ccc
Run BLAST on NCBI

transcript from alignment at sc0004531:12..4073-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043751 ID=TCONS_00043751|Name=TCONS_00043751|organism=Clytia hemisphaerica|type=transcript|length=4062bp|location=Sequence derived from alignment at sc0004531:12..4073- (Clytia hemisphaerica)
TCCACTTCAAGTCCACTTGGCGATGACTGGAAAAGAAACAGAGATGAGAG
TTATGTGGAATTCTGCTGAAGGTACTTAAGTCCTTAAAAAAGCAATTTGG
GTGCCTAGTTACTTAAATTGTTATGCTTGAAGGATAATTATAATTATAAA
TCACACAGAACTCAGTATCCTTTAAAAAGGAAAAGAACAGGGCCTGAAAG
TAATGGTAGGTAGATAGTCATATATTTATAAAGCCCGAAAGGCTAGATGT
CGTGCTTTGGCTGAAAAGTGTGTCGAAGTTAGGTAGGAAATCGTACCTAG
GTCGGAAATCCTACCTAGGTCACGTGACATTACAATAGAATTTCAGTGCT
TGACCAATAAGAAGTTTCACGGGTTTTCGAAAACAATAGCAGTAATATTT
TTTGCGATATTCACTTTTTTTTGCTTTGAAGAGTTTAAAGCACGACATCT
AGCACTTGGGGCTTTACAGAAATCTGTGAGACAGGGCTTTTAGACAATCT
TTTGATTGTTTTGACGGAAGGGACTCGGCTATTTATGAACTGAACTGAAG
GGAACATTGAAGCATTCCAACCGGCAACTCCTTATTTGTGGAGCTAAAGC
CTGAGACCAGTTGTTCATTTCTCCTCAAAGCACCCTTTAAAGGTGTTCTT
GTAAGTTTGTTTCAAATTAAGGATATTTTTCTTTTCATTTATCAGTCTCT
GAAGGCATCCAAGTACGTTATGGTAAAACTAAAGACCTTGACAAAACACA
AACGAAATACACCGTCAAAACTTACAAAGCTTCAGACATGTGCGAATCGC
CTGCTAACACAACTGGATTTTGGGATGCTGGATATATTTATGATGTTTTG
TTGACTGACTTGGAACCCAACACGAGATATTATTACTCCTGTGGTAGTAA
AGAGGTAAAAATAAATGCCAAGAAAAGACCTTATTGAAGCTCAAGCTAGA
ACAATAGCCACTTGAAAATTCCACTTAAAAATTTCGTCCCCTAATTTTAG
TGTAAAAAGTTTTTCTTCAAACTTTAATAACGACAATAATGTGGAGTCTT
TTAATGAAACAGCAGAAGGAAGGTCTGTTGCAAAGAACGCCCTTTTAAGC
ATTTTGTTTCGGTTGATGAACACCAGATCTATTTTCGACATCTTTAAGCA
ATTTTAAAAGTAAACCTTATATATTTCGATCACAATCTTAAAATTTCCTT
GATCCAAATAAACATCAAAAGTTAAACTTTCCTCTTTTCAATGCAAAGGA
ATTCAATATTTATAATTCTTGAGAAAAAGTAAACTCGGAGTGTTGAGCCC
TTTTGTGATACAGCCTTGGCCGTTTTTTGAAACTGATTCACTTTTTCACC
CACATTTCAGTTTATGACGTCGGTGTACAACTTTACAACTGTGATCAAAG
GAGGAGACATGACTCCTTTCAAATTTATCGCTTTTGGTGACATGGGAATC
ACCTCTCAAGCTGAAACAACCACTAAATCAGTTCGCCAAGAGATCGAGAA
TAACGATGTGAAATTTGTTTACCATGCCGGCGACATCTCGTACGCTCGTG
GATATGTAAGAATCATTTGTTATTGGGATAGTTTAGACTCGAAGTTTTTA
TTGATAATTTAGTTCAAACTTTTTCCACTTCGGAGGGATTTCCATCTTAG
CAAGGCCTTCTCCATTATCGGATTACAGTAGAGTCTCCTTAACTCGACCA
CCTGGTTTATAAGGCATTGTTAACTGAGGGTACCAGCAAATTTGGTCAAG
TTAAGCATATTTGCATAAAAGATTTCGAGTTGCAGAGGCTCCACCCTCAC
TGCAACATCTTTATTTTGACAACTGACATTTACGCGTGTGGTACAAATGT
TTACTCTCCTTTCTCCTAAGGCGTACCTGTGGGATCAATGGTTTCACGAG
ATTCAACCAATGTCCGCTTTGGCTCCATACATGATTAACCTGGGTAACCA
TGAGTACCAACACATCTATGCATTTGATAAAGACCCTTCTCACCAACCGA
TGTGGCATCCATCATGGTATAACGGAGGTCAAGGATCTTTCGGTGAATGT
GCTATTCCAATGGTTAATCGATTTCATATGCCTGATAACGGACTCGGTAT
ATTCTGGTATGTGTTTCCTGAAACATTTATGTAATCTTAGTATTACCCCA
GCTGGCACACAACGTTTTTTTGACGTTTATCTAACGTTCACAACGTCCAT
ATAACGTTAGATGAACGTTGAAACAACGTCGTGTGCCAGCTGGGACTATT
TATAAAAAGAACATCGAGGATTATGAAAAGTTTCAAAATGTAAATAAGAG
ATTGGATCTTTTTTCCATTCAGTTTGATTTTGGAAATTTTTGATGATTTT
GATTATTGATATCAGTACAATAGCNCCGATGTGGCATCCATCATGGTATA
ACGGAGGTCAAGGATCTTTCGGTGAATGTGCTATTCCAATGGTTAATCGA
TTTCATATGCCTGATAATGGACTCGGTATATTCTGGTATGTGTTTCCTGA
AACATGTTTATGTAATCTTAGTATTTATAAAAGAACATCGAGGATTATGA
AAAGTTTCAAAATGTAAATAAGAGATTGGATCTTTTTTCCATTCAATTTG
ATTTTGGAAATTTTTGATGATTTTGATTATTGATATCTATACATACACTA
TTTCATAGTGATTTTTCTCTTATTTGTTTTCTTAGGCATAGTTATAACGT
TGGTTTCATTCACATGGTCTCCATCAGCTCTGAGCACGATTACCGAGAAG
GTTCACTACAATATAGATGGTTGGAAAATGATCTGAAGAATGTCGATCGC
ACCAAAACACCTTTTGTGATCGTTAGCGCCCATCGACCGATGTATTGCAG
TGAATATTACCCAGGTGAGGTCAAAATTACGGAAATTGCTATAAAATCTT
TTCTTTTGTGATTTTCAACTTCTCAAAAGTTACTGGAAAGTGCCTAAGGG
GTTGAAAATATGTGTGTATTCTGCAGGAATGTTATTTTTCGGTAAAAGCT
TACTTTAGGCGTACAAACTTTCGCGAGCAGAAACTTTCGCGAGGTCGAAA
AATCCCGAAATCTACGACATTTACTTTTGCGAATTTGACAAAAAAAATAT
TTTTTTTCGCCAATTATGTATATTTTAAGTAGAAAATCAAGTTTTCGGTA
CATAAAACCAGTGTTTTCATCGTTCAAATGTACTCAAACCGCAATTGATT
GACTTTTGCATAATATCCACGCTAAATTTGATCCTTGTTATCGTCAAAGA
GTAAAGTTTGAGTAAATTTTCTTTACAGATTTCTTTTCGCGAGCATAAAC
TTTCGCGAATTGCCCCCTCAAGAAATTTCAAAGACATTTACTTTCGCGAA
AAGGGCTAGAATTCGCGAAAATCGCGAAAGTTTCTGCTCACGAAAGTTTG
TACGCCTAAAGTATTTCATGGAGATGCTGAAGTGTTTTTTCTTTTGTAGG
ACCAGATTGGACTACCATACTTGGCCAACAACAATATCTGGAAGATTTGT
TATACAAATACCAAGTGGATGTCGGTCTTTGGGCTCACTATCACATTTAC
GAACGAACGTGTAAAGTATATCGCAACGAATGCCGGGAGGACGGGATAAC
TCATTTGGTGGTCGGTACAGGAGGTGTGAACTTGGAGATCAATAAATGGT
TCACAAAGGAATGGTCTAAGGTACGTGACGCTGATTTTGGTTACGGTCGA
TTCTCGGTGACAAACTCCACTCACCTTTTGTTCGAATTCGTGAAACTTAA
CACTGGGAAAGTTGGCGACTCGGTTTGGATCACCAAATAATTTTTGATTA
ACTGATTTCTGACTACAGCGCCGTAGGAAGCATTTTCATATTGGGGGGGC
TGAAGTTTAGTGACACCGCGAGGGTCAACCATGGTTTGGCCCGAGGGGGG
AAATTTTAAAAATTGAGCTCTAGATTGCTTAAAAATACACTCAAAACATG
CACATAAAAGACAATTATGACAAATTAAAAAAGAAAAACTTTGCATTCAT
TTTGCAAAATAACCATTTTTGAAAAAATTATTGGGGGGGCATAGCTACCC
TCCCCTTGCCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027430XLOC_027430Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043751-exon-sc0004531-1575043694:4003..4073TCONS_00043751-exon-sc0004531-1575043694:4003..4073Clytia hemisphaericaexon
TCONS_00043751-exon-sc0004531-1575043694:3170..3378TCONS_00043751-exon-sc0004531-1575043694:3170..3378Clytia hemisphaericaexon
TCONS_00043751-exon-sc0004531-1575043694:2519..2713TCONS_00043751-exon-sc0004531-1575043694:2519..2713Clytia hemisphaericaexon
TCONS_00043751-exon-sc0004531-1575043694:1968..2203TCONS_00043751-exon-sc0004531-1575043694:1968..2203Clytia hemisphaericaexon
TCONS_00043751-exon-sc0004531-1575043694:1210..1388TCONS_00043751-exon-sc0004531-1575043694:1210..1388Clytia hemisphaericaexon
TCONS_00043751-exon-sc0004531-1575043694:12..624TCONS_00043751-exon-sc0004531-1575043694:12..624Clytia hemisphaericaexon
TCONS_00043751-exon-sc0004531-1510915933:4003..4073TCONS_00043751-exon-sc0004531-1510915933:4003..4073Clytia hemisphaericaexon
TCONS_00043751-exon-sc0004531-1510915933:3170..3378TCONS_00043751-exon-sc0004531-1510915933:3170..3378Clytia hemisphaericaexon
TCONS_00043751-exon-sc0004531-1510915933:2519..2713TCONS_00043751-exon-sc0004531-1510915933:2519..2713Clytia hemisphaericaexon
TCONS_00043751-exon-sc0004531-1510915933:1968..2203TCONS_00043751-exon-sc0004531-1510915933:1968..2203Clytia hemisphaericaexon
TCONS_00043751-exon-sc0004531-1510915933:1210..1388TCONS_00043751-exon-sc0004531-1510915933:1210..1388Clytia hemisphaericaexon
TCONS_00043751-exon-sc0004531-1510915933:12..624TCONS_00043751-exon-sc0004531-1510915933:12..624Clytia hemisphaericaexon
TCONS_00043751-exon-sc0004531-1491911889:4003..4073TCONS_00043751-exon-sc0004531-1491911889:4003..4073Clytia hemisphaericaexon
TCONS_00043751-exon-sc0004531-1491911889:3170..3378TCONS_00043751-exon-sc0004531-1491911889:3170..3378Clytia hemisphaericaexon
TCONS_00043751-exon-sc0004531-1491911889:2519..2713TCONS_00043751-exon-sc0004531-1491911889:2519..2713Clytia hemisphaericaexon
TCONS_00043751-exon-sc0004531-1491911889:1968..2203TCONS_00043751-exon-sc0004531-1491911889:1968..2203Clytia hemisphaericaexon
TCONS_00043751-exon-sc0004531-1491911889:1210..1388TCONS_00043751-exon-sc0004531-1491911889:1210..1388Clytia hemisphaericaexon
TCONS_00043751-exon-sc0004531-1491911889:12..624TCONS_00043751-exon-sc0004531-1491911889:12..624Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004531supercontigsc0004531:12..4073 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.93818	0.843631	0.164445	10.7149	33.0761	5.96791	4.25751	5.69418	0.0221069	0.0590592	2.51416	4.01684	5.96551	0	21.368	22.5016	14.9893	29.4098	34.4791	33.0729	6.89643	4.0434	2.59281	16.2485	0	0	6.79473	0.0268121	4.92682	0.710972
Blast
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BLAST of TCONS_00043751 vs. Swiss-Prot (Human)
Match: ACP7 (Acid phosphatase type 7 OS=Homo sapiens GN=ACP7 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 1.524e-41
Identity = 110/370 (29.73%), Postives = 172/370 (46.49%), Query Frame = 2 
Query:  209 YIYDVLLTDLEPNTRYYYSCGSKEFMTSVYNFTTVIKGGDMTPFKFIAFGDMGITSQAETTTKSVRQEIENNDVKFVYHAGDISYA--RGYAYLWDQWFHEIQPMSALAPYMINLGNHEYQHIYAFDKDPSHQPMWHPSWYNGGQGSFGECAIPMVNRFHMPDNGLGIFWHSYNVGFIHMVSISSE------HDYREGSLQYRWLENDLK--NVDRTKTPFVIVSAHRPMYCSE-------YYPGPDWTTILGQQQYLEDLLYKYQVDVGLWAHYHIYERTCKVYR----NECRE------DGITHLVVGTGGVNLEINKW--FTKEWSKVRDADFGYGRFSVTNSTHLLFEFVKLNT-GKVGDSVWITK 1228
            YI+ V L  L P  +Y Y CGS +  +  + F  +  G   +P +   FGD+G  +        +R++ +      V H GD +Y   +  A + D++   I+P++A  PYM   GNHE ++ ++  K                             RF MP +  G+ W+S+++G  H++S S+E      +       Q+RWLE+DL+  N +R   P++I   HRPMYCS         +       + G+   LEDL YKY VD+ LWAH H YER   +Y     N  RE       G  H++ G+ G    +  +  F + WS VR  ++GY R  + N TH+  + V  +  GK+ D VW+ +
Sbjct:   92 YIHRVTLRKLLPGVQYVYRCGSAQGWSRRFRFRALKNGAHWSP-RLAVFGDLG--ADNPKAVPRLRRDTQQGMYDAVLHVGDFAYNLDQDNARVGDRFMRLIEPVAASLPYMTCPGNHEERYNFSNYK----------------------------ARFSMPGDNEGL-WYSWDLGPAHIISFSTEVYFFLHYGRHLVQRQFRWLESDLQKANKNRAARPWIITMGHRPMYCSNADLDDCTRHESKVRKGLQGKLYGLEDLFYKYGVDLQLWAHEHSYERLWPIYNYQVFNGSREMPYTNPRGPVHIITGSAGCEERLTPFAVFPRPWSAVRVKEYGYTRLHILNGTHIHIQQVSDDQDGKIVDDVWVVR 429
The following BLAST results are available for this feature:
BLAST of TCONS_00043751 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACP71.524e-4129.73Acid phosphatase type 7 OS=Homo sapiens GN=ACP7 PE... [more]
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