TCONS_00043735 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043735
Unique NameTCONS_00043735
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length386

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043735 ID=TCONS_00043735|Name=TCONS_00043735|organism=Clytia hemisphaerica|type=transcript|length=386bp
GTTTGCTTTTTTGACTTGCTTTGCAATGTGTTCTTCAAATGTAAGTTCTG
AGTCAATGAGGATTCCaagatctttttcttcaaagacgTGTTCCAATTGG
CGCCCATCTAGGGAATATGGATGAGCATGTTTGATGTTTCCAAACTTTCC
TAGCGTCATAACGTGACACTTTTCAGGATGGAATAGTAATAGCCAGTCTT
TCGACCATTCTACAAGTGTGTCTATATCCCAAACAAAACTCTGCACATCC
GGTACTCAACAATTTCGTTTGcttcaaagttttttaaatcaattttgtct
gaatttttgAACCATAAAAATCTAGTAAGGTCTCTCTGTTCGTTGTTTAG
TTTTATGTGTAGAAAAGCCTTTTCAATATCACCGAC
Run BLAST on NCBI

transcript from alignment at sc0004517:4136..4521

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043735 ID=TCONS_00043735|Name=TCONS_00043735|organism=Clytia hemisphaerica|type=transcript|length=386bp|location=Sequence derived from alignment at sc0004517:4136..4521 (Clytia hemisphaerica)
GTCGGTGATATTGAAAAGGCTTTTCTACACATAAAACTAAACAACGAACA
GAGAGACCTTACTAGATTTTTATGGTTcaaaaattcagacaaaattgatt
taaaaaactttgaagCAAACGAAATTGTTGAGTACCGGATGTGCAGAGTT
TTGTTTGGGATATAGACACACTTGTAGAATGGTCGAAAGACTGGCTATTA
CTATTCCATCCTGAAAAGTGTCACGTTATGACGCTAGGAAAGTTTGGAAA
CATCAAACATGCTCATCCATATTCCCTAGATGGGCGCCAATTGGAACAcg
tctttgaagaaaaagatcttGGAATCCTCATTGACTCAGAACTTACATTT
GAAGAACACATTGCAAAGCAAGTCAAAAAAGCAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027417XLOC_027417Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043735-exon-sc0004517-1491911889:4136..4521TCONS_00043735-exon-sc0004517-1491911889:4136..4521Clytia hemisphaericaexon
TCONS_00043735-exon-sc0004517-1510915933:4136..4521TCONS_00043735-exon-sc0004517-1510915933:4136..4521Clytia hemisphaericaexon
TCONS_00043735-exon-sc0004517-1575043694:4136..4521TCONS_00043735-exon-sc0004517-1575043694:4136..4521Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004517supercontigsc0004517:4136..4521 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.6487	1.39261	1.07675	1.46531	0.306092	0.554059	0	0.253046	0.966085	1.29672	0	0.597204	0.420879	0	1.41285	0.797038	0.680724	0	0.811374	1.41028	1.96219	2.55981	0	1.09212	0.664746	0.97058	1.71987	1.27021	0.416171	0.975466
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043735 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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