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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043699 ID=TCONS_00043699|Name=TCONS_00043699|organism=Clytia hemisphaerica|type=transcript|length=1865bp
GTTTTGTTCGCCACTAAACTAACTCCTTGAAAAATCTAATGGTCCGCAAG
ATTATGAGcttcattttctattttctgtATCAATAAAGACATACACAACT
CTTTCAGGGCAAACACTGTATATTGGATGTTAGTGGGTACGCCATCAAGC
GTCTACAAGTGGCACAATTATATCCTATCGCTGTTTTCATCAAACCAATC
TCCGTCGAATGGATGCAAGAGATGAACAAACGTCTTTTACTTGAACCCGC
TCAAAAGAATTTCGAACGCGCACAAAAATTAGAACAAGAATTTATCGAAT
ACTTCACTGGTGTTATTACTGGCGAGTCTTATGAAGAAATCTATTCTCAT
GTCAAAGAATTGATCGCACAACAAAGCAAACCCGTCGTTTGGATACCAAG
CAAAGAGAAATTATAAACCAATGTGAGACACATGGTAAGAAAACATATCC
CGTATAGTAGTGTGGAGTATTGGACGAACATACTGGAATAAATGGACGTG
GACGTCGGTAGCATAGCTTGAGATACGCTAGCTTCTTTTTTTATCATGGC
GACGGTGGTTTGGAAGCTACAGTGAAGTTCACATATAAGGGCTGCCGACA
AATTATAAATGGAATAGAAGGAGAATGGATGTTGCTATTTGTTGGTTTTA
GGTGGATGGGTACTGGTCTTGATGTTCTTATTACGAACGTTTCAACAAGA
GTAACGCCACTGAGAAGGAGGCCTTTTCGCCTTATTTGGAGTGTCGTATC
TGGTTTAATGAGCACTCCCCTGAGGAAGTGTTTCTGTTACAAAAGCGTCT
GTTACGACACTTGTTACATACTGACGCTTACTCCCGACGAATACGAAAAA
CAAAATTGGCTGCGTTGATGTTCATAATAAAATGAAACGTAAAAAGGACA
CTAAGGTTGTACTGAAACACAAGAACTACTGCAGTCCTTATTTCGCATCA
AACCAAACAATTTTTTTTTTCGTTTTCGTTGGAAGTGAAATTCAAGTAGC
TGAAAGGTGAAACATGATGGAAAATTCATTAAAAAATACGTTGTTTTATC
CGTCATCGAATACCGATATTTAATTTGTCCATAAATTGTATACTAGAAGT
GCTTTTACTTAATTAAATAATTCCCCATTGTTTTTTATACTTGCTTTTAA
TAAATTTAGTAATTATATTATTATTATTGTCTTGTTAGAATTATTTTCCC
AAATTATTTTGCCTCGTTTATTTCTTTCAATCCAGCTTATACTCAGTTTG
ATTATATTGTAATAGTGGTTTAATGCACTAAAATGGCTATCTAATCTTGA
TACAAACAAAGTTAAAACATTAGTCCCTCTGACAGTGGAGTCTTTTTTTC
TCTATGTAATTCGTACAAATTAGATTCAATTCGACTTCGAAGTAGAGATT
TCCAAGTGTACTCGAAGTAATTTCTCTGCACCGATTTATATTTTAGGCAA
TTTTAAATTCTAGGAATTTATCTTATTGATGTCTTTCTATCTAGAAGTAT
ACAGTTTTTAAAAAAGTTTTAACTTGTTTTTAAAATTTTCTTTTCTTTTG
ACCATAATTATGATTATGAAAATTTAGTCTTTGTAACGGTGTTGTTTTCT
TGGCAAATTTCTCCCAATATTCTATCTTTATGCGCTTGTAAAGCGACATT
TAAGTTGGAAAGATATTTCAAAGTGATCTTTTCGTAGCTCATCATGCGAC
AAATGAATATGAATAATATGTATTTTGTGTAGAATTTATATAAACTATTC
TTTCTTTTTTTTCATTTTTTGTTTGTCATCATGTACATATATATTCTAAA
GCAAGTTAATGTCAGCGGGCaagaaacattttattttgtgtaaaatttgt
tcactttcatttttt Run BLAST on NCBI transcript from alignment at sc0004483:4204..6430- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043699 ID=TCONS_00043699|Name=TCONS_00043699|organism=Clytia hemisphaerica|type=transcript|length=2227bp|location=Sequence derived from alignment at sc0004483:4204..6430- (Clytia hemisphaerica)
GTTTTGTTCGCCACTAAACTAACTCCTTGAAAAATCTAATGGTCCGCAAG
ATTATGAGCTTCATTTTCTATTTTCTGTATCAATAAAGACATACACAACT
CTTTCAGGGCAAACACTGTATATTGGATGTTAGTGGGTACGCCATCAAGC
GTCTACAAGTGGCACAATTATATCCTATCGCTGTTTTCATCAAACCAATC
TCCGTCGAATGGATGCAAGAGATGAACAAACGTCTTTTACTTGAACCCGC
TCAAAAGAATTTCGAACGCGCACAAAAATTAGAACAAGAATTTATCGAAT
ACTTCACTGGTACGAACTTCATTTTTAGCTACAATATTTTCTCGTCTCTG
TTGAGAGTAGTATAAGGGGTGTTACTCATTAAACAGGGGTTCGTTACCGT
TTCTTATTCAAGTTCCTTTAACAGGCTCATTGATNCTTACTCAGTAAACA
GGGGTTCGTTACCGTTTCTCATTCAAGTTCTTTTAACAGGCTCATTGATT
GCTTACTCGTTTGACCGTTTTGAAAAGTTGATATTCCTGAAAGAAATTAC
TATTACTATACATTTTCAAAGCTCCTCGGTATTCTCCTCTCCTCGAAATA
CGAAAAAAGGATTTTCCCGTAAACTTAGATCTGACGGCAGATGATGATGG
TAATTTTCTTTTAATTAACAGGTGTTATTACTGGCGAGTCTTATGAAGAA
ATCTATTCTCATGTCAAAGAATTGATCGCACAACAAAGCAAACCCGTCGT
TTGGATACCAAGCAAAGAGAAATTATAAACCAATGTGAGACACATGGTAA
GAAAACATATCCCGTATAGTAGTGTGGAGTATTGGACGAACATACTGGAA
TAAATGGACGTGGACGTCGGTAGCATAGCTTGAGATACGCTAGCTTCTTT
TTTTATCATGGCGACGGTGGTTTGGAAGCTACAGTGAAGTTCACATATAA
GGGCTGCCGACAAATTATAAATGGAATAGAAGGAGAATGGATGTTGCTAT
TTGTTGGTTTTAGGTGGATGGGTACTGGTCTTGATGTTCTTATTACGAAC
GTTTCAACAAGAGTAACGCCACTGAGAAGGAGGCCTTTTCGCCTTATTTG
GAGTGTCGTATCTGGTTTAATGAGCACTCCCCTGAGGAAGTGTTTCTGTT
ACAAAAGCGTCTGTTACGACACTTGTTACATACTGACGCTTACTCCCGAC
GAATACGAAAAACAAAATTGGCTGCGTTGATGTTCATAATAAAATGAAAC
GTAAAAAGGACACTAAGGTTGTACTGAAACACAAGAACTACTGCAGTCCT
TATTTCGCATCAAACCAAACAATTTTTTTTTTCGTTTTCGTTGGAAGTGA
AATTCAAGTAGCTGAAAGGTGAAACATGATGGAAAATTCATTAAAAAATA
CGTTGTTTTATCCGTCATCGAATACCGATATTTAATTTGTCCATAAATTG
TATACTAGAAGTGCTTTTACTTAATTAAATAATTCCCCATTGTTTTTTAT
ACTTGCTTTTAATAAATTTAGTAATTATATTATTATTATTGTCTTGTTAG
AATTATTTTCCCAAATTATTTTGCCTCGTTTATTTCTTTCAATCCAGCTT
ATACTCAGTTTGATTATATTGTAATAGTGGTTTAATGCACTAAAATGGCT
ATCTAATCTTGATACAAACAAAGTTAAAACATTAGTCCCTCTGACAGTGG
AGTCTTTTTTTCTCTATGTAATTCGTACAAATTAGATTCAATTCGACTTC
GAAGTAGAGATTTCCAAGTGTACTCGAAGTAATTTCTCTGCACCGATTTA
TATTTTAGGCAATTTTAAATTCTAGGAATTTATCTTATTGATGTCTTTCT
ATCTAGAAGTATACAGTTTTTAAAAAAGTTTTAACTTGTTTTTAAAATTT
TCTTTTCTTTTGACCATAATTATGATTATGAAAATTTAGTCTTTGTAACG
GTGTTGTTTTCTTGGCAAATTTCTCCCAATATTCTATCTTTATGCGCTTG
TAAAGCGACATTTAAGTTGGAAAGATATTTCAAAGTGATCTTTTCGTAGC
TCATCATGCGACAAATGAATATGAATAATATGTATTTTGTGTAGAATTTA
TATAAACTATTCTTTCTTTTTTTTCATTTTTTGTTTGTCATCATGTACAT
ATATATTCTAAAGCAAGTTAATGTCAGCGGGCAAGAAACATTTTATTTTG
TGTAAAATTTGTTCACTTTCATTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043699-exon-sc0004483-1575043694:6122..6430 | TCONS_00043699-exon-sc0004483-1575043694:6122..6430 | Clytia hemisphaerica | exon |
| TCONS_00043699-exon-sc0004483-1575043694:4204..5759 | TCONS_00043699-exon-sc0004483-1575043694:4204..5759 | Clytia hemisphaerica | exon |
| TCONS_00043699-exon-sc0004483-1510915933:6122..6430 | TCONS_00043699-exon-sc0004483-1510915933:6122..6430 | Clytia hemisphaerica | exon |
| TCONS_00043699-exon-sc0004483-1510915933:4204..5759 | TCONS_00043699-exon-sc0004483-1510915933:4204..5759 | Clytia hemisphaerica | exon |
| TCONS_00043699-exon-sc0004483-1491911889:6122..6430 | TCONS_00043699-exon-sc0004483-1491911889:6122..6430 | Clytia hemisphaerica | exon |
| TCONS_00043699-exon-sc0004483-1491911889:4204..5759 | TCONS_00043699-exon-sc0004483-1491911889:4204..5759 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004483 | supercontig | sc0004483:4204..6430 - |
Blast
BLAST of TCONS_00043699 vs. Swiss-Prot (Human)
Match: DLG1 (Disks large homolog 1 OS=Homo sapiens GN=DLG1 PE=1 SV=2) HSP 1 Score: 144.05 bits (362), Expect = 8.790e-36 Identity = 65/103 (63.11%), Postives = 85/103 (82.52%), Query Frame = 3
Query: 105 QGKHCILDVSGYAIKRLQVAQLYPIAVFIKPISVEWMQEMNKRLLLEPAQKNFERAQKLEQEFIEYFTGVITGESYEEIYSHVKELIAQQSKPVVWIPSKEKL 413
+GKHCILDVSG AIKRLQ+AQLYPI++FIKP S+E + EMNKRL E A+K FERA KLEQEF E+FT ++ G++ E+IY+ VK++I +QS +W+P+KEKL
Sbjct: 802 KGKHCILDVSGNAIKRLQIAQLYPISIFIKPKSMENIMEMNKRLTEEQARKTFERAMKLEQEFTEHFTAIVQGDTLEDIYNQVKQIIEEQSGSYIWVPAKEKL 904
The following BLAST results are available for this feature:
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