TCONS_00043690 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043690
Unique NameTCONS_00043690
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1839

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043690 ID=TCONS_00043690|Name=TCONS_00043690|organism=Clytia hemisphaerica|type=transcript|length=1839bp
TTCTTTTTGCAATATGGAGCGTGATAGAGTCCAGAATGTAGATCATACTT
GGGAAGAATTCTTTCAATACTTGGATGAGCTCTTAGATGCAGCTGCTAAT
ATATATTCCAGAAATGCTGCTGAAATTGTACTTTCAAGAATAGAGTTTGT
GTGCCCCATCTTGGGACAAATGTTACCAGGATTTCAAGGAAATCAAGAAA
GTGTACAGCTTATTTCTGGAATTCTAGAGAATTTTAATGCTATCTTCAGA
GAAATATCCTTCATGTTCAATACCGAAGTTTGTTATCCAAGTTCTCCAGC
AGTAATTTCATTTGAACAGCCCCCTGTGATCCGGCAAAGTCAGCCTGGAC
GACCAAGACTTGACATTTCCCGAGAAACACTCATAAGTTTGAGAGAAATT
GGCCATTCCTGGAATACAATTGCAAATATGTTTCGTGTTTCCAGATGGAC
AATACTAAGACGTGTCAATGATTTTGAATTGAACCATCTATCAAGATTTG
CTGACATTTCAGATGCAGACCTCAATAATTTGGTCTCATCATTTCTGAGG
GAACACGGCAATTTTGTTGGTTTTTCTTTGGTGTACGGTCATTTAAAGTC
TCGGGGCATTCATGTCCAACAAAAACGTATCAAAGATAGTATCAAGGCTG
TAGATCCTGAAAATGCTCGAATTAGATGGGCATTAGTTGTTTCTAGGCGA
GTGTACAGTGTCAGAGGTCCTAATAGCCTCTGGCACATGGATGGTCACCA
TAGCCTCATAACTTGGAAGTTCGTTATACACGGAGCTATTGATGGTTTTT
CTCGACTTATAACAATGTTACACTGCTCCACCAACAATTACTCAGAAACC
GTACTTTCATTATTTGAGCAAGCTATCGCCACTTTCGGAATTCCATCAAG
AGTTAGAACTGATTTTGGTGGTGAAAATGTTCTTGTGTGGAGAGCGATGG
AGGATTTGAGAGGATTGAATAGGGGAAGTGCTTTACGTGGTACATCACAG
CAGAATCAACGTATTGAGCGTTTGTGGCGTGATGTCTACAGATCAGTATG
TTGTACATATTATTACCTGTTCCATACTATGGAAACAAATGGAATTCTCG
ATAGAAATAATGATAGACACATTTTTGCGTTGCATTTTGTGTTCTTACCA
AGAATAAATCATTCTTTGTCTTCATTTAAATCAGCATGGAATAACCACCC
TATGCGCACTGAGCATAACTGGACCCCAACTAGAATGTGGCAAAACGGAA
TGGTGGATATCAGGAACAGAAATCTTAATACAGTTCAAGATGTTTTGCAG
CAAAATCATGATGGCGTGATAGATGACCTAGAATGGTATGGTTACGATCC
TGAAGCTCCTGTCCCATTTGAGAATAACAACCTTCCACACGTTGAAGTTG
ATGACATTGACTTTCCACAAGAGTTTTTCAATCATTTAGATAACCATATT
AATCCATTAGAAGATTCAGAAACAATGGGTATTGAGATTTATTTAAACGC
ACTTGAGATTCTTAATGGGTTATTGTAGAATCTATCTTGTACAATTTACG
ATTATTTTTACCTAAAGGGAGTTACATTTTGGTAATAGGGTTAAGGTGAA
CAAAAAGTAAAGAATGAATCTGATTGGTCGATGGAATATGTCCTTCAGTA
AAGAATCATCCAGGCTAGTTCAATTtattccaataaagtatgagcACAAA
CACCGATAGGACTTCTAAAAGTTGTGTTTTGTGTGTTCGATCCAATAGct
gcaaaaaattcatttttttgatcggacttgcaaatgttgtgttttctgtg
tttcGTGtgttcaatagaccttttcgcctttccatccNT
Run BLAST on NCBI

protein sequence of TCONS_00043690-protein

>TCONS_00043690-protein ID=TCONS_00043690-protein|Name=TCONS_00043690-protein|organism=Clytia hemisphaerica|type=polypeptide|length=508bp
SFCNMERDRVQNVDHTWEEFFQYLDELLDAAANIYSRNAAEIVLSRIEFV
CPILGQMLPGFQGNQESVQLISGILENFNAIFREISFMFNTEVCYPSSPA
VISFEQPPVIRQSQPGRPRLDISRETLISLREIGHSWNTIANMFRVSRWT
ILRRVNDFELNHLSRFADISDADLNNLVSSFLREHGNFVGFSLVYGHLKS
RGIHVQQKRIKDSIKAVDPENARIRWALVVSRRVYSVRGPNSLWHMDGHH
SLITWKFVIHGAIDGFSRLITMLHCSTNNYSETVLSLFEQAIATFGIPSR
VRTDFGGENVLVWRAMEDLRGLNRGSALRGTSQQNQRIERLWRDVYRSVC
CTYYYLFHTMETNGILDRNNDRHIFALHFVFLPRINHSLSSFKSAWNNHP
MRTEHNWTPTRMWQNGMVDIRNRNLNTVQDVLQQNHDGVIDDLEWYGYDP
EAPVPFENNNLPHVEVDDIDFPQEFFNHLDNHINPLEDSETMGIEIYLNA
LEILNGLL
Run BLAST on NCBI

transcript from alignment at sc0004472:4929..6767

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043690 ID=TCONS_00043690|Name=TCONS_00043690|organism=Clytia hemisphaerica|type=transcript|length=1839bp|location=Sequence derived from alignment at sc0004472:4929..6767 (Clytia hemisphaerica)
ANggatggaaaggcgaaaaggtctattgaacaCACgaaacacagaaaaca
caacatttgcaagtccgatcaaaaaaatgaattttttgcagCTATTGGAT
CGAACACACAAAACACAACTTTTAGAAGTCCTATCGGTGTTTGTgctcat
actttattggaataAATTGAACTAGCCTGGATGATTCTTTACTGAAGGAC
ATATTCCATCGACCAATCAGATTCATTCTTTACTTTTTGTTCACCTTAAC
CCTATTACCAAAATGTAACTCCCTTTAGGTAAAAATAATCGTAAATTGTA
CAAGATAGATTCTACAATAACCCATTAAGAATCTCAAGTGCGTTTAAATA
AATCTCAATACCCATTGTTTCTGAATCTTCTAATGGATTAATATGGTTAT
CTAAATGATTGAAAAACTCTTGTGGAAAGTCAATGTCATCAACTTCAACG
TGTGGAAGGTTGTTATTCTCAAATGGGACAGGAGCTTCAGGATCGTAACC
ATACCATTCTAGGTCATCTATCACGCCATCATGATTTTGCTGCAAAACAT
CTTGAACTGTATTAAGATTTCTGTTCCTGATATCCACCATTCCGTTTTGC
CACATTCTAGTTGGGGTCCAGTTATGCTCAGTGCGCATAGGGTGGTTATT
CCATGCTGATTTAAATGAAGACAAAGAATGATTTATTCTTGGTAAGAACA
CAAAATGCAACGCAAAAATGTGTCTATCATTATTTCTATCGAGAATTCCA
TTTGTTTCCATAGTATGGAACAGGTAATAATATGTACAACATACTGATCT
GTAGACATCACGCCACAAACGCTCAATACGTTGATTCTGCTGTGATGTAC
CACGTAAAGCACTTCCCCTATTCAATCCTCTCAAATCCTCCATCGCTCTC
CACACAAGAACATTTTCACCACCAAAATCAGTTCTAACTCTTGATGGAAT
TCCGAAAGTGGCGATAGCTTGCTCAAATAATGAAAGTACGGTTTCTGAGT
AATTGTTGGTGGAGCAGTGTAACATTGTTATAAGTCGAGAAAAACCATCA
ATAGCTCCGTGTATAACGAACTTCCAAGTTATGAGGCTATGGTGACCATC
CATGTGCCAGAGGCTATTAGGACCTCTGACACTGTACACTCGCCTAGAAA
CAACTAATGCCCATCTAATTCGAGCATTTTCAGGATCTACAGCCTTGATA
CTATCTTTGATACGTTTTTGTTGGACATGAATGCCCCGAGACTTTAAATG
ACCGTACACCAAAGAAAAACCAACAAAATTGCCGTGTTCCCTCAGAAATG
ATGAGACCAAATTATTGAGGTCTGCATCTGAAATGTCAGCAAATCTTGAT
AGATGGTTCAATTCAAAATCATTGACACGTCTTAGTATTGTCCATCTGGA
AACACGAAACATATTTGCAATTGTATTCCAGGAATGGCCAATTTCTCTCA
AACTTATGAGTGTTTCTCGGGAAATGTCAAGTCTTGGTCGTCCAGGCTGA
CTTTGCCGGATCACAGGGGGCTGTTCAAATGAAATTACTGCTGGAGAACT
TGGATAACAAACTTCGGTATTGAACATGAAGGATATTTCTCTGAAGATAG
CATTAAAATTCTCTAGAATTCCAGAAATAAGCTGTACACTTTCTTGATTT
CCTTGAAATCCTGGTAACATTTGTCCCAAGATGGGGCACACAAACTCTAT
TCTTGAAAGTACAATTTCAGCAGCATTTCTGGAATATATATTAGCAGCTG
CATCTAAGAGCTCATCCAAGTATTGAAAGAATTCTTCCCAAGTATGATCT
ACATTCTGGACTCTATCACGCTCCATATTGCAAAAAGAA

Coding sequence (CDS) from alignment at sc0004472:4929..6767

>TCONS_00043690 ID=TCONS_00043690|Name=TCONS_00043690|organism=Clytia hemisphaerica|type=CDS|length=1527bp|location=Sequence derived from alignment at sc0004472:4929..6767 (Clytia hemisphaerica)
CTACAATAACCCATTAAGAATCTCAAGTGCGTTTAAATAAATCTCAATAC
CCATTGTTTCTGAATCTTCTAATGGATTAATATGGTTATCTAAATGATTG
AAAAACTCTTGTGGAAAGTCAATGTCATCAACTTCAACGTGTGGAAGGTT
GTTATTCTCAAATGGGACAGGAGCTTCAGGATCGTAACCATACCATTCTA
GGTCATCTATCACGCCATCATGATTTTGCTGCAAAACATCTTGAACTGTA
TTAAGATTTCTGTTCCTGATATCCACCATTCCGTTTTGCCACATTCTAGT
TGGGGTCCAGTTATGCTCAGTGCGCATAGGGTGGTTATTCCATGCTGATT
TAAATGAAGACAAAGAATGATTTATTCTTGGTAAGAACACAAAATGCAAC
GCAAAAATGTGTCTATCATTATTTCTATCGAGAATTCCATTTGTTTCCAT
AGTATGGAACAGGTAATAATATGTACAACATACTGATCTGTAGACATCAC
GCCACAAACGCTCAATACGTTGATTCTGCTGTGATGTACCACGTAAAGCA
CTTCCCCTATTCAATCCTCTCAAATCCTCCATCGCTCTCCACACAAGAAC
ATTTTCACCACCAAAATCAGTTCTAACTCTTGATGGAATTCCGAAAGTGG
CGATAGCTTGCTCAAATAATGAAAGTACGGTTTCTGAGTAATTGTTGGTG
GAGCAGTGTAACATTGTTATAAGTCGAGAAAAACCATCAATAGCTCCGTG
TATAACGAACTTCCAAGTTATGAGGCTATGGTGACCATCCATGTGCCAGA
GGCTATTAGGACCTCTGACACTGTACACTCGCCTAGAAACAACTAATGCC
CATCTAATTCGAGCATTTTCAGGATCTACAGCCTTGATACTATCTTTGAT
ACGTTTTTGTTGGACATGAATGCCCCGAGACTTTAAATGACCGTACACCA
AAGAAAAACCAACAAAATTGCCGTGTTCCCTCAGAAATGATGAGACCAAA
TTATTGAGGTCTGCATCTGAAATGTCAGCAAATCTTGATAGATGGTTCAA
TTCAAAATCATTGACACGTCTTAGTATTGTCCATCTGGAAACACGAAACA
TATTTGCAATTGTATTCCAGGAATGGCCAATTTCTCTCAAACTTATGAGT
GTTTCTCGGGAAATGTCAAGTCTTGGTCGTCCAGGCTGACTTTGCCGGAT
CACAGGGGGCTGTTCAAATGAAATTACTGCTGGAGAACTTGGATAACAAA
CTTCGGTATTGAACATGAAGGATATTTCTCTGAAGATAGCATTAAAATTC
TCTAGAATTCCAGAAATAAGCTGTACACTTTCTTGATTTCCTTGAAATCC
TGGTAACATTTGTCCCAAGATGGGGCACACAAACTCTATTCTTGAAAGTA
CAATTTCAGCAGCATTTCTGGAATATATATTAGCAGCTGCATCTAAGAGC
TCATCCAAGTATTGAAAGAATTCTTCCCAAGTATGATCTACATTCTGGAC
TCTATCACGCTCCATATTGCAAAAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027374XLOC_027374Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043690-proteinTCONS_00043690-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043690-exon-sc0004472-1491911889:4929..6767TCONS_00043690-exon-sc0004472-1491911889:4929..6767Clytia hemisphaericaexon
TCONS_00043690-exon-sc0004472-1510915933:4929..6767TCONS_00043690-exon-sc0004472-1510915933:4929..6767Clytia hemisphaericaexon
TCONS_00043690-exon-sc0004472-1575043694:4929..6767TCONS_00043690-exon-sc0004472-1575043694:4929..6767Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004472supercontigsc0004472:4929..6767 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.8405	1.86454	1.67579	2.07752	37.9521	26.2057	17.3953	18.6342	5.7137	10.0284	7.01233	4.23957	2.77269	2.89574	1.52018	2.63806	1.80151	2.14364	2.29058	2.7601	2.16754	2.39276	3.007	3.49662	4.11288	5.26895	2.79388	1.8866	2.54271	2.18793
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043690 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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