TCONS_00043685 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043685
Unique NameTCONS_00043685
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length641

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043685 ID=TCONS_00043685|Name=TCONS_00043685|organism=Clytia hemisphaerica|type=transcript|length=641bp
CTGAAAATATTGCTACAATACACCTGCAATTGGCAAGCCTGCCATCTAAG
ctcttttccaaaaaagaaaaagtcattgatttgaaagttcttataatctg
GGTTCTTCTAAAGAAATGTGTTTGCATGGTGGGAAACACCCCTTCAACCT
GAAATACCTAGAATAAGCCACCCCCACCTAAAAGAAGCCACCCCCAACCT
AAAAGCAGCCACCTCCACCTAAAAGCAGCCACCCCCACCTATAGGGTAAC
CCCGGCATCTAAAATTGGTTACCATCCCAAACTATATTGATCTTTAACCC
CAACCAATATTCATCCAACCCTCATCTCCTTGGTTTATCCTTCTTTGGTT
ATTCTTGCCTAAATTATAAGTACATTTTCTGAGTGCCACTAAATCTAACC
CACCAACCCTATTGCGTTGGAATGATGCTAAGCGTGGGGAAAATCGATAT
GCAGTTAGCCCCTTGCCGAGGCCCCAAGCCCCCCACAAGCGGTTGGCATG
ATGGGGTTTTTTACAGCGTGATgaggcaaaatttcaaaaaaatacggcgt
gatggcgtgaagtTAAGTGCCAACATGAACGCAAAACTGAAGAAAATTGA
GGCGTGATGACgtgaaaaagaaatatatttgCCGTGAATAT
Run BLAST on NCBI

transcript from alignment at sc0004467:6131..6771

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043685 ID=TCONS_00043685|Name=TCONS_00043685|organism=Clytia hemisphaerica|type=transcript|length=641bp|location=Sequence derived from alignment at sc0004467:6131..6771 (Clytia hemisphaerica)
ATATTCACGGcaaatatatttctttttcacGTCATCACGCCTCAATTTTC
TTCAGTTTTGCGTTCATGTTGGCACTTAacttcacgccatcacgccgtat
ttttttgaaattttgcctcATCACGCTGTAAAAAACCCCATCATGCCAAC
CGCTTGTGGGGGGCTTGGGGCCTCGGCAAGGGGCTAACTGCATATCGATT
TTCCCCACGCTTAGCATCATTCCAACGCAATAGGGTTGGTGGGTTAGATT
TAGTGGCACTCAGAAAATGTACTTATAATTTAGGCAAGAATAACCAAAGA
AGGATAAACCAAGGAGATGAGGGTTGGATGAATATTGGTTGGGGTTAAAG
ATCAATATAGTTTGGGATGGTAACCAATTTTAGATGCCGGGGTTACCCTA
TAGGTGGGGGTGGCTGCTTTTAGGTGGAGGTGGCTGCTTTTAGGTTGGGG
GTGGCTTCTTTTAGGTGGGGGTGGCTTATTCTAGGTATTTCAGGTTGAAG
GGGTGTTTCCCACCATGCAAACACATTTCTTTAGAAGAACCcagattata
agaactttcaaatcaatgactttttcttttttggaaaagagCTTAGATGG
CAGGCTTGCCAATTGCAGGTGTATTGTAGCAATATTTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027369XLOC_027369Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043685-exon-sc0004467-1491911889:6131..6771TCONS_00043685-exon-sc0004467-1491911889:6131..6771Clytia hemisphaericaexon
TCONS_00043685-exon-sc0004467-1510915933:6131..6771TCONS_00043685-exon-sc0004467-1510915933:6131..6771Clytia hemisphaericaexon
TCONS_00043685-exon-sc0004467-1575043694:6131..6771TCONS_00043685-exon-sc0004467-1575043694:6131..6771Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004467supercontigsc0004467:6131..6771 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0909718	0.131748	0.380908	0.257938	0.960729	0.648747	0.330052	0.483183	0.330102	0.670123	0.302091	0.408512	0.166615	0.417882	0.0724125	0.3492	0.385838	0.170336	0	0.181219	0.117203	1.65219	1.38321	0.13233	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043685 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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