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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043683 ID=TCONS_00043683|Name=TCONS_00043683|organism=Clytia hemisphaerica|type=transcript|length=1335bp
ATCGCATTCCGCAAATAAACGTCATCGTATCTTTCCAATCAAAATGAATA
ACATTACAGTTGAAATGTTGATTGATAGTGGAAGCGATTTAAACATTATC
AGTCAAGAAACTCTAACCAAAATGGACTTTGAACCCAAACGTTTTCCATA
CAAGGGGCAAGCTAAATCGTTTAATGCTCCAATTCCATTTAAAGAATGTT
GTTATGTAAAAATCAGGGCAGGGAACTCAGAAACAAATGCCCGATTTATC
ATCAATCCTCACCCATCCGTTACTATCCTTGGATATGACTCGTCAATTGA
ATTGAACCTACTTCGTGTCAGACCTGATCCAGTTGCAACAACTACCACTA
CAGAAAGAGTTAATAAAATTACTGCTAATTCTTCAAAGATGAATGACATT
ATTACCGAATATAGTGATCGATTTCAAGGCTTGGGTAAATTAAAAGGTGT
TTCATTGAACATTAAGACTGACCCATCTATTCAACCAGTTGCACAGAAAC
CTCGACGGCTTCCAATATTAATGCGAAAGGAAGTGGACACAGAACTAGNN
AATGTCATCTGCAGCAGAGATCTACCAACGTGAAATTGAATTAGCACTCA
CTGGTCTCCCAGGAGTTAAAAACATTTCAGATGACATTATTATTGGCGGC
AGAACTGAAGAAGAGCTAATTTCAAGAACAGAGGCAGTATTCGCAAGACT
GCGCACCAAAAATCTTACAGTTAACCCAAAAAAGTGTAACTTTCTAAAAA
CAGAACTGCTTTACATGGGACACATATTATCCCAATTTGGTGTATCACCA
GATAAAGAAAAAGTTCGATCCATCGTTAACCTCCTACCTCcaacaaacat
aaaaaaacTTCGAAGCTTCTTGGGGATGATTACGTACTGTTCCAAATTTC
TCCCAAATTTTGCTACCGTCACCGAGCCACTGAGAAATCTACTAAAAAAG
GACGTTCTATGGGAATGGACCTCCGTTCATCAAAGTACATTCGACAGTTT
GAAGGAACTTTTACTTGACAGTGAAACACTTGCTTACTTTGATGTGAATG
CAGAGACAGAAATATCAACTGATGCTTCTTGTGTTGGTCTTGGTGCAGTC
CTCATGCAGAAACAGAAGAATGGGACATGGAGACCAGTCAGCTATGCAAG
TAGATCATTATCACCAGTGGAGAGAAGATATAGCCCACTAGAACGTGAAT
GTCTTGCAGTTATTTATGCCCTCAAACGTTTTCGATTATACCTCTACGGA
CTTTATTTTACTATTAAAACTGATCACAAACCACTGGTACCCATTTTCTC
ATCCCCAATGAAATCAATCACACCCCGCATTGAAA Run BLAST on NCBI protein sequence of TCONS_00043683-protein >TCONS_00043683-protein ID=TCONS_00043683-protein|Name=TCONS_00043683-protein|organism=Clytia hemisphaerica|type=polypeptide|length=261bp
MSSAAEIYQREIELALTGLPGVKNISDDIIIGGRTEEELISRTEAVFARL
RTKNLTVNPKKCNFLKTELLYMGHILSQFGVSPDKEKVRSIVNLLPPTNI
KKLRSFLGMITYCSKFLPNFATVTEPLRNLLKKDVLWEWTSVHQSTFDSL
KELLLDSETLAYFDVNAETEISTDASCVGLGAVLMQKQKNGTWRPVSYAS
RSLSPVERRYSPLERECLAVIYALKRFRLYLYGLYFTIKTDHKPLVPIFS
SPMKSITPRIE Run BLAST on NCBI transcript from alignment at sc0004467:733..2067 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043683 ID=TCONS_00043683|Name=TCONS_00043683|organism=Clytia hemisphaerica|type=transcript|length=1335bp|location=Sequence derived from alignment at sc0004467:733..2067 (Clytia hemisphaerica)
TTTCAATGCGGGGTGTGATTGATTTCATTGGGGATGAGAAAATGGGTACC
AGTGGTTTGTGATCAGTTTTAATAGTAAAATAAAGTCCGTAGAGGTATAA
TCGAAAACGTTTGAGGGCATAAATAACTGCAAGACATTCACGTTCTAGTG
GGCTATATCTTCTCTCCACTGGTGATAATGATCTACTTGCATAGCTGACT
GGTCTCCATGTCCCATTCTTCTGTTTCTGCATGAGGACTGCACCAAGACC
AACACAAGAAGCATCAGTTGATATTTCTGTCTCTGCATTCACATCAAAGT
AAGCAAGTGTTTCACTGTCAAGTAAAAGTTCCTTCAAACTGTCGAATGTA
CTTTGATGAACGGAGGTCCATTCCCATAGAACGTCCTTTTTTAGTAGATT
TCTCAGTGGCTCGGTGACGGTAGCAAAATTTGGGAGAAATTTGGAACAGT
ACGTAATCATCCCCAAGAAGCTTCGAAgtttttttatgtttgttgGAGGT
AGGAGGTTAACGATGGATCGAACTTTTTCTTTATCTGGTGATACACCAAA
TTGGGATAATATGTGTCCCATGTAAAGCAGTTCTGTTTTTAGAAAGTTAC
ACTTTTTTGGGTTAACTGTAAGATTTTTGGTGCGCAGTCTTGCGAATACT
GCCTCTGTTCTTGAAATTAGCTCTTCTTCAGTTCTGCCGCCAATAATAAT
GTCATCTGAAATGTTTTTAACTCCTGGGAGACCAGTGAGTGCTAATTCAA
TTTCACGTTGGTAGATCTCTGCTGCAGATGACATTNNCTAGTTCTGTGTC
CACTTCCTTTCGCATTAATATTGGAAGCCGTCGAGGTTTCTGTGCAACTG
GTTGAATAGATGGGTCAGTCTTAATGTTCAATGAAACACCTTTTAATTTA
CCCAAGCCTTGAAATCGATCACTATATTCGGTAATAATGTCATTCATCTT
TGAAGAATTAGCAGTAATTTTATTAACTCTTTCTGTAGTGGTAGTTGTTG
CAACTGGATCAGGTCTGACACGAAGTAGGTTCAATTCAATTGACGAGTCA
TATCCAAGGATAGTAACGGATGGGTGAGGATTGATGATAAATCGGGCATT
TGTTTCTGAGTTCCCTGCCCTGATTTTTACATAACAACATTCTTTAAATG
GAATTGGAGCATTAAACGATTTAGCTTGCCCCTTGTATGGAAAACGTTTG
GGTTCAAAGTCCATTTTGGTTAGAGTTTCTTGACTGATAATGTTTAAATC
GCTTCCACTATCAATCAACATTTCAACTGTAATGTTATTCATTTTGATTG
GAAAGATACGATGACGTTTATTTGCGGAATGCGAT Coding sequence (CDS) from alignment at sc0004467:733..2067 >TCONS_00043683 ID=TCONS_00043683|Name=TCONS_00043683|organism=Clytia hemisphaerica|type=CDS|length=783bp|location=Sequence derived from alignment at sc0004467:733..2067 (Clytia hemisphaerica)
TTCAATGCGGGGTGTGATTGATTTCATTGGGGATGAGAAAATGGGTACCA
GTGGTTTGTGATCAGTTTTAATAGTAAAATAAAGTCCGTAGAGGTATAAT
CGAAAACGTTTGAGGGCATAAATAACTGCAAGACATTCACGTTCTAGTGG
GCTATATCTTCTCTCCACTGGTGATAATGATCTACTTGCATAGCTGACTG
GTCTCCATGTCCCATTCTTCTGTTTCTGCATGAGGACTGCACCAAGACCA
ACACAAGAAGCATCAGTTGATATTTCTGTCTCTGCATTCACATCAAAGTA
AGCAAGTGTTTCACTGTCAAGTAAAAGTTCCTTCAAACTGTCGAATGTAC
TTTGATGAACGGAGGTCCATTCCCATAGAACGTCCTTTTTTAGTAGATTT
CTCAGTGGCTCGGTGACGGTAGCAAAATTTGGGAGAAATTTGGAACAGTA
CGTAATCATCCCCAAGAAGCTTCGAAgtttttttatgtttgttgGAGGTA
GGAGGTTAACGATGGATCGAACTTTTTCTTTATCTGGTGATACACCAAAT
TGGGATAATATGTGTCCCATGTAAAGCAGTTCTGTTTTTAGAAAGTTACA
CTTTTTTGGGTTAACTGTAAGATTTTTGGTGCGCAGTCTTGCGAATACTG
CCTCTGTTCTTGAAATTAGCTCTTCTTCAGTTCTGCCGCCAATAATAATG
TCATCTGAAATGTTTTTAACTCCTGGGAGACCAGTGAGTGCTAATTCAAT
TTCACGTTGGTAGATCTCTGCTGCAGATGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043683-exon-sc0004467-1491911889:733..2067 | TCONS_00043683-exon-sc0004467-1491911889:733..2067 | Clytia hemisphaerica | exon |
| TCONS_00043683-exon-sc0004467-1510915933:733..2067 | TCONS_00043683-exon-sc0004467-1510915933:733..2067 | Clytia hemisphaerica | exon |
| TCONS_00043683-exon-sc0004467-1575043694:733..2067 | TCONS_00043683-exon-sc0004467-1575043694:733..2067 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004467 | supercontig | sc0004467:733..2067 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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