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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043675 ID=TCONS_00043675|Name=TCONS_00043675|organism=Clytia hemisphaerica|type=transcript|length=427bp
GTTTACGAGGTGATATATGCAAAATTATTATTTAAACCGTCAGACTTTTT
TAATCTACAGTTATGTAAAAAGGAGTTAGAGTTTAGAATTTGGTTGACGA
GATTTTTTAAATACTGTTATGAAATCATCTGTATGTTTAGTCGTTTTTGC
CTCGGCCATTGCTTTTGCAAATACCCAGGAGTTAAGCGCGAATGGGTTTG
CTGGAGCCAATGTGACATCCGTCACAAGTACGTCATCCGTCACACCGACG
ACGACTTCACCACCAGCATCATCTACAGTGCTATCAGATGTAACAACTGG
TCCAGTTCCTTACTGTTTCGATTCGATTCCTGCTGAAGACTGTCAAACAT
ATAAAGATGTAGGAGCTTGTAATGATTTCTTACCCAGTCTCCTGTGTCGT
TCCACGTGCGGAAATTGCTTTGAAGGT Run BLAST on NCBI protein sequence of TCONS_00043675-protein >TCONS_00043675-protein ID=TCONS_00043675-protein|Name=TCONS_00043675-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
MKSSVCLVVFASAIAFANTQELSANGFAGANVTSVTSTSSVTPTTTSPPA
SSTVLSDVTTGPVPYCFDSIPAEDCQTYKDVGACNDFLPSLLCRSTCGNC
FEG Run BLAST on NCBI transcript from alignment at sc0004462:35..1356+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043675 ID=TCONS_00043675|Name=TCONS_00043675|organism=Clytia hemisphaerica|type=transcript|length=1322bp|location=Sequence derived from alignment at sc0004462:35..1356+ (Clytia hemisphaerica)
GTTTACGAGGTGATATATGCAAAATTATTATTTAAACCGTCAGACTTTTT
TAATCTACAGTTATGTAAAAAGGAGTTAGAGTTTAGAATTTGGTTGACGA
GATTTTTTAAATACTGTTATGAAATCATCTGTATGTTTAGTCGTTTTTGC
CTCGGCCATTGCTTTTGCAAATACCCAGGAGTTAAGCGCGAGTGAGtttc
tgttgtttttgtttttgaaatccttaaaaatcaaagttgACTAATTTTAA
GCACATTAATTAAATTATTAAATCTACTGATATGAAAATTAGGATAAAAA
CACTTTAGCAGAGTGTTTTACAGATTATGTGCTGGTATCAAAGAGGCTGT
GGGTGGTTAAAACCAAGTTTTGTATACTCTTGGCTAACAAGTCTAAACCT
TAGGGAGGGAGAGGTGATTAGACAAAAATTCTCTGGGGTTTCACTCTAGA
CCACAGCAGGTTTCTGCAGGCCAAAtttctcaaaccatctgattatccct
ttaatttGGGTAAATTCACCTAAACGTCAcggtaaatttttcaatttttt
tccctCTAATTCTTTTAATAAACGTTTTCCCACTAGATGGGTTTGCTGGA
GCCAATGTGACATCCGTCACAAGTACGTCATCCGTCACACCGACGACGAC
TTCACCACCAGCATCATCTACAGTGCTATCAGATGTAACAACTGGTCCAG
gtttgagattttcattttcactttagTTCGGATAATTAAAAGACGTATGC
AATGCTTGTGCCTGCCTTCTTGGTAGCATTGAAATTCTCATTCCTTCGTG
TAGAatgagaccatgttcacacgtttcgctccggtatgattttcgttaag
GATCGAGTGTGTTTATATtagtttcggaacgtttcggagcaagaaaacga
agcagttccgttccgatgaaaaaagtggagcgaaaccgtttcgatctgtt
ttgctttgtaacgtcttcttttttgacgttccGAATTATGACGTTCACat
ttgtttcggaaccgtttcggaacggaacggaacggaacggaacggaactg
taacgtctgaacatgatcTAAATATGCAGATTGTCTCATAAAGATTCCCT
GATTCAAAGGATTTCTAAAGAGACTCTCTGCAACCGGAATCTACTGAATC
TTACACAGCTAGGcctaaattcttaattttcttttttcaccgCATTTTAG
TTCCTTACTGTTTCGATTCGATTCCTGCTGAAGACTGTCAAACATATAAA
GATGTAGGAGCTTGTAATGATTTCTTACCCAGTCTCCTGTGTCGTTCCAC
GTGCGGAAATTGCTTTGAAGGT Coding sequence (CDS) from alignment at sc0004462:35..1356+ >TCONS_00043675 ID=TCONS_00043675|Name=TCONS_00043675|organism=Clytia hemisphaerica|type=CDS|length=927bp|location=Sequence derived from alignment at sc0004462:35..1356+ (Clytia hemisphaerica)
ATGAAATCATCTGTATGTTTAGTCGTTTTTGCCTCGGCCATTGCTTTTGC
AAATACCCAGGAGTTAAGCGCGAATGGGTTTGCTGGAGCCAATGTGACAT
CCGTCACAAGTACGTCATCCGTCACACCGACGACGACTTCACCACCAGCA
TCATCTACAGTGCTATCAGATGTAACAACTGGTCCAGTTCCTTACTGTTT
CGATTCGATTCCTGCTGAAGACTGTCAAACATATAAAGATGTAGGAGCTT
GTAATGATTTCTTACCCAGTCTCCTGTGTCGTTCCACGTGCGGAAATTGC
TTTGAAGGTATGAAATCATCTGTATGTTTAGTCGTTTTTGCCTCGGCCAT
TGCTTTTGCAAATACCCAGGAGTTAAGCGCGAATGGGTTTGCTGGAGCCA
ATGTGACATCCGTCACAAGTACGTCATCCGTCACACCGACGACGACTTCA
CCACCAGCATCATCTACAGTGCTATCAGATGTAACAACTGGTCCAGTTCC
TTACTGTTTCGATTCGATTCCTGCTGAAGACTGTCAAACATATAAAGATG
TAGGAGCTTGTAATGATTTCTTACCCAGTCTCCTGTGTCGTTCCACGTGC
GGAAATTGCTTTGAAGGTATGAAATCATCTGTATGTTTAGTCGTTTTTGC
CTCGGCCATTGCTTTTGCAAATACCCAGGAGTTAAGCGCGAATGGGTTTG
CTGGAGCCAATGTGACATCCGTCACAAGTACGTCATCCGTCACACCGACG
ACGACTTCACCACCAGCATCATCTACAGTGCTATCAGATGTAACAACTGG
TCCAGTTCCTTACTGTTTCGATTCGATTCCTGCTGAAGACTGTCAAACAT
ATAAAGATGTAGGAGCTTGTAATGATTTCTTACCCAGTCTCCTGTGTCGT
TCCACGTGCGGAAATTGCTTTGAAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043675-exon-sc0004462-1491911889:35..225 | TCONS_00043675-exon-sc0004462-1491911889:35..225 | Clytia hemisphaerica | exon |
| TCONS_00043675-exon-sc0004462-1510915933:35..225 | TCONS_00043675-exon-sc0004462-1510915933:35..225 | Clytia hemisphaerica | exon |
| TCONS_00043675-exon-sc0004462-1575043694:35..225 | TCONS_00043675-exon-sc0004462-1575043694:35..225 | Clytia hemisphaerica | exon |
| TCONS_00043675-exon-sc0004462-1491911889:621..734 | TCONS_00043675-exon-sc0004462-1491911889:621..734 | Clytia hemisphaerica | exon |
| TCONS_00043675-exon-sc0004462-1510915933:621..734 | TCONS_00043675-exon-sc0004462-1510915933:621..734 | Clytia hemisphaerica | exon |
| TCONS_00043675-exon-sc0004462-1575043694:621..734 | TCONS_00043675-exon-sc0004462-1575043694:621..734 | Clytia hemisphaerica | exon |
| TCONS_00043675-exon-sc0004462-1491911889:1235..1356 | TCONS_00043675-exon-sc0004462-1491911889:1235..1356 | Clytia hemisphaerica | exon |
| TCONS_00043675-exon-sc0004462-1510915933:1235..1356 | TCONS_00043675-exon-sc0004462-1510915933:1235..1356 | Clytia hemisphaerica | exon |
| TCONS_00043675-exon-sc0004462-1575043694:1235..1356 | TCONS_00043675-exon-sc0004462-1575043694:1235..1356 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004462 | supercontig | sc0004462:35..1356 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003582 | ShKT_dom |
Blast
The following BLAST results are available for this feature:
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